mRNA_P-littoralis_Contig1103.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1103.1.1
Unique NamemRNA_P-littoralis_Contig1103.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1103.1.1 vs. uniprot
Match: D7G2T1_ECTSI (Putative transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T1_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 3.980e-131
Identity = 213/358 (59.50%), Postives = 266/358 (74.30%), Query Frame = 1
Query:    1 ARFFVGDDEEVDQDATAEKFFLVAGLSTVMFGLAFNVPFIVAPSVLYAARQSGITMGGHLASQAIANLAAALFLYFAAHLSFVSFTPRALRLGAGCGIAMLVSIIGLRSLDLLVAGSFTLQPLTWQNILGLATIVAACVRASRENIVKKFTWVVGVPAVVTVLVYAVIDRSKFQGYSSVEHPPLSNWGDGSFGVVNFSQLQEVPSLHWFYTIRTFASIIINICSIILVLIDSVCIEDVDIELKSSGESNFSDAIGGSHKFRHMVCAIPMMSCLGNLMGVTTQAAFVQSMMVVFAGGTTGLSAAVTGALLVSTTVLWPLLPVVVPAHVSGALTVVISLRFFTVIRLINVKRPSSLLMFG 1074
            A   VG DE VDQ +T E F LVAG ST+ FG  FN+PFIVAPSVLY+A ++                            SFVS  P ALRLGAGCGI++LVS++G+R++ +LV  SF+LQ  TWQ I+G   I AAC +A+ E  +KK+  V+GVP V+TV +YAV+DRSKFQGYS  +HPPLSNWG G+FG +NFS+L+E P  +WFY  RTF S+ IN+ SI+L+LID+VC+EDV  ++KS+ E +FS+AIGG+ KFR M CAIP MS +GN MGVTTQAAFVQSM++VFAGG TGLSA VTGALL+ TTV+WPLLP++ PAHVSGALTVVISLRFFTVI++I+V  P +LLMFG
Sbjct:   42 ASLLVGGDESVDQKSTFEAFLLVAGASTMAFGAFFNMPFIVAPSVLYSAPET----------------------------SFVSLIPTALRLGAGCGISVLVSVLGMRNIGVLVNNSFSLQAFTWQIIVGFGIITAACGKAAPEKQLKKWMHVLGVPMVITVAIYAVLDRSKFQGYSLADHPPLSNWGMGAFGTINFSELRETPRKYWFYISRTFLSVNINVSSILLILIDAVCLEDVRTKVKSTREVDFSNAIGGTKKFRSMACAIPCMSLVGNFMGVTTQAAFVQSMILVFAGGKTGLSAVVTGALLLMTTVMWPLLPLLAPAHVSGALTVVISLRFFTVIKMIDVNEPRNLLMFG 371          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1103.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2T1_ECTSI3.980e-13159.50Putative transporter n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1103contigP-littoralis_Contig1103:103..4903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1247024.JRLH01000008_gene1607
Preferred namepurP
PFAMsXan_ur_permease
Model size1668
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K06901
KEGG TC2.A.1.40
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005345,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006863,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015205,GO:0015207,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015851,GO:0015853,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:0098655,GO:0098660,GO:0098662,GO:1902600,GO:1904823
Exons8
Evalue2.52e-07
EggNOG OGsCOG2252@1|root,COG2252@2|Bacteria,1MUV0@1224|Proteobacteria,1RMBE@1236|Gammaproteobacteria
Descriptionpermease
Cds size1668
COG categoryS
BiGG ReactioniECH74115_1262.ECH74115_5145,iECOK1_1307.ECOK1_4117,iECSP_1301.ECSP_4762,iECUMN_1333.ECUMN_4191,iECs_1301.ECs4651,iG2583_1286.G2583_4505,iJO1366.b3714,iUTI89_1310.UTI89_C4220,iY75_1357.Y75_RS18500,iZ_1308.Z5209
BRITEko00000,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1103.1.1prot_P-littoralis_Contig1103.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1103 103..4903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789437.4329908-CDS-P-littoralis_Contig1103:102..2601680789437.4329908-CDS-P-littoralis_Contig1103:102..260Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 103..260 +
1680789437.4448364-CDS-P-littoralis_Contig1103:446..6691680789437.4448364-CDS-P-littoralis_Contig1103:446..669Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 447..669 +
1680789437.4530587-CDS-P-littoralis_Contig1103:1700..20271680789437.4530587-CDS-P-littoralis_Contig1103:1700..2027Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 1701..2027 +
1680789437.4609218-CDS-P-littoralis_Contig1103:2253..23221680789437.4609218-CDS-P-littoralis_Contig1103:2253..2322Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 2254..2322 +
1680789437.47212-CDS-P-littoralis_Contig1103:2725..28641680789437.47212-CDS-P-littoralis_Contig1103:2725..2864Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 2726..2864 +
1680789437.4818923-CDS-P-littoralis_Contig1103:3014..31111680789437.4818923-CDS-P-littoralis_Contig1103:3014..3111Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 3015..3111 +
1680789437.495409-CDS-P-littoralis_Contig1103:3500..35591680789437.495409-CDS-P-littoralis_Contig1103:3500..3559Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 3501..3559 +
1680789437.5076451-CDS-P-littoralis_Contig1103:4307..49031680789437.5076451-CDS-P-littoralis_Contig1103:4307..4903Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 4308..4903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1103.1.1

>prot_P-littoralis_Contig1103.1.1 ID=prot_P-littoralis_Contig1103.1.1|Name=mRNA_P-littoralis_Contig1103.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=556bp
ARFFVGDDEEVDQDATAEKFFLVAGLSTVMFGLAFNVPFIVAPSVLYAAR
QSGITMGGHLASQAIANLAAALFLYFAAHLSFVSFTPRALRLGAGCGIAM
LVSIIGLRSLDLLVAGSFTLQPLTWQNILGLATIVAACVRASRENIVKKF
TWVVGVPAVVTVLVYAVIDRSKFQGYSSVEHPPLSNWGDGSFGVVNFSQL
QEVPSLHWFYTIRTFASIIINICSIILVLIDSVCIEDVDIELKSSGESNF
SDAIGGSHKFRHMVCAIPMMSCLGNLMGVTTQAAFVQSMMVVFAGGTTGL
SAAVTGALLVSTTVLWPLLPVVVPAHVSGALTVVISLRFFTVIRLINVKR
PSSLLMFGISILLIPFSFDFVDALCIAAVLGFTRDKIDELNGVDFRQFFF
RGGENKLAVPAAEDEQKVDCETGSLSSLSVLTKSMVAKKGLRPGRGRLVR
RHTMMHISSAPQGPVSMERQVGADAMQPSTNGPLQMYGPHRILKGLSRRS
GSLSLPRPSLNSSGLLVKPDPSLQVDDHSTSLHWALAVAATLQLVLSAVS
NQAKT*
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mRNA from alignment at P-littoralis_Contig1103:103..4903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1103.1.1 ID=mRNA_P-littoralis_Contig1103.1.1|Name=mRNA_P-littoralis_Contig1103.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4801bp|location=Sequence derived from alignment at P-littoralis_Contig1103:103..4903+ (Pylaiella littoralis U1_48)
GCACGCTTCTTTGTTGGGGATGACGAAGAGGTGGACCAAGACGCAACGGC AGAGAAGTTCTTTCTCGTTGCCGGACTATCGACCGTTATGTTCGGTTTGG CCTTCAACGTGCCGTTTATTGTGGCGCCTTCGGTGCTATATGCTGCACGG CAATCTGGGTGAGTGCGGTTTACGATGTCACGTTCACCCAAGACCAAAGG AAAAAGCCGTAGGCTCAGCGCCTTATTGTCGACAACGCTTCACCTTTATG GATAAATGGCACCGGTGACATGATTTCGACACCACTGTAACATCAAAACC TAGAGAAGACGAACCCCGCTCTATTCCATATTCGCATCGCGCAGGATCAC GATGGGGGGGCACCTTGCATCGCAAGCCATCGCCAACCTGGCAGCGGCAT TATTTTTGTACTTCGCGGCACATCTTAGCTTCGTGTCGTTCACACCGAGG GCACTACGGCTAGGAGCTGGGTGCGGGATAGCTATGCTTGTCAGTATCAT TGGCCTGCGCAGCTTGGATCTTTTGGTCGCCGGCTCTTTCACACTACAGC CCCTCACCTGGCAAAACGTGAGTGCCGCCGATGTTCTGTGATTCGGAATA TCGAGGGTTAGCTGAGCTTTTATCTTTTGATACAACCGCAACCGAGCTCT AAGATTTAGCCCTGAGACCCTCGGATTGTGATGTCGTGATTCCTGTCTCG GCGACCTTTATGTTTGTCCCCGTACGTATAGTACGCGAACGCGGGTCATT CTGAAGAAAAAGCAACGCGCAGGCATACTGCTAGCGAGGGAAATAAGAAT GCTCTCAGCTCTCATCGCAAAGAGTGATAAGTCATGCACCGAGGTAGGCA AATTGGTCTGAGGAAGACCTCTCCAGTTGAGTCCCCGCTCGACGAGTAGG CCCCTTTGGTGCATAGAGAGGCCGAAGATAATGGAGTCGAGATGGTGAAC GGGCTAGGGTACGTACAAATTTAATATACTTTACTGGAACTCCTCTATAG CAGAATGGAAAAAATAATGCTGTGCTGTGTCAACCCGATAGGCTTTGGCA GTGGTGTCACAACAGCGACTGATGGCGCTCACATGCAAATATAATGCGCC AGTGAATTATGAGTCTGTCTGATGTGGCAAGTCTGATATAATGAAAACCA ATCGCCAAGACTAAATACTTAGATAAATGGCTCAATCGCGAACTCGTGGT CGTGTATATGACCTCGTCGCTGGGGATAATGTAGGCTGTCCTCTGACGCA ATGCCGTGTCCTTGTAGCGTCCAGAAAACAGGCTACAGTAAGGCGCTCAC GTAAATAGGTCAATTTGAAAACTTTGTCAAAATCGATAACTTCAGAGAGC GAGGCAAAAGCATTAGGTCGACATATCTGTTCTAAAGCGAATACTACGCA CCAAACTTTCCAAGAATGTTCTTCAGAGGTGGCGATGTACCCTTTTACGC GCACTAAACGGTCCAAATGTAGAGAACAATGATCATGGTTTTCTACAGAT AGGGATCGTAAGATATCATCCCGTGACGCCGAAGCCAACCCCTGACTGAC GACCCCTTTGTCCTACCAAACGGCACCACTCACCGTCACGGCGCTCAGAT ACTTGGACTGGCCACCATCGTGGCCGCGTGTGTCAGGGCCTCTCGCGAAA ATATAGTAAAAAAGTTTACTTGGGTCGTTGGAGTCCCCGCGGTGGTCACC GTGCTGGTGTATGCCGTGATCGACCGGTCAAAGTTTCAAGGGTACTCCTC GGTAGAGCACCCGCCCCTGTCCAACTGGGGAGATGGGAGTTTCGGCGTTG TAAACTTCTCCCAGCTACAGGAAGTCCCAAGCCTGCACTGGTTTTACACC ATCAGAACATTTGCCAGCATCATCATCAACATTTGCAGCATTATCCTGGT CTTGATCGACTCGGTCTGTATTGAGGTGAGAAATCCAAAAAAGACATGGG GGGGCCTGGGCGTCGCAAAATGAACGTGGGATATCAAAGTGCGTAGCGCA GTATCAGTCAGTCTGAAAATCTCAACAAGAATGACCCTCCTCAGCACTTG CGGGGGCTTGACACACGCTACAGCAGCTGGCAGACACGATTTTCGACAAC AAACCGACATCCCACTTCCTATACAGTATGCCTGATGTCTTTGTTTCTCA GGATGTGGACATCGAGCTGAAATCCTCCGGAGAATCGAACTTCTCTGACG CCATCGGAGGTTCCCACAAGGTGAACCTTTATCAGCAGTCGTGTCTGCCC CTGCGTATGAAATGAATACGGCAGCCAAGAATTTTAAACTTACTTGAGTT CTGAGGTACGACATAATTCAGATATGAACTTTCGTCCGAAATCAGCGTTG GGTTAATGGAGCCGTGCGCACTCGAAAGGGATGACAAGTCATACCGACGG CGGACACCTACGGTTTACCATCTGACGGCTGTGCAGTTTGAAGCGAAACT CCGTTCTAAAATTGAAGCTACCGAAACGGTTTCGGCCCGCGCCGTAGACT GGGTAGAGCAACGCAAATATGAGCGAACAGGGGGTTCCCGCCCCCCGTTC CATCCCAATGCAAACCCCCTCTATTCCTGCACCTACGCTGTTGCGTACCA TGTCATGTCCCTCATACCCGAAGTTTCGGCACATGGTTTGCGCCATACCG ATGATGTCCTGCCTCGGGAACCTGATGGGTGTCACCACCCAGGCCGCGTT CGTCCAGTCCATGATGGTCGTCTTTGCTGGTGGTACTACCGGTCTGAGCG CTGCCGTCACAGGTGTGCGTCTCTCAATGGTGGAAGGTGGTGATCGAATT GAAAGGGGAAAGGACGACGGAATAACCGATGTCACAAAGTCCAATAGTAG CTACCACAATGTTTCCGACGGTCCGACCTGCTGACAATATTCGGTGCCCT GCCGTCGTTCAGGAGCCCTGCTCGTCTCGACAACCGTTCTATGGCCACTA CTGCCGGTGGTAGTACCGGCGCACGTGTCGGGAGCTCTGACTGTAGTCAT CAGCTTGAGGTGCGTTTTCACTCCAACATACACTCACGACCTTCCCAAAA ACCTCCGCAGCCGAAAATTGGCGACGTGGTAGATTCACTGAAGCGGCTAG GGAGTGGACATGCGAGGGCTTGTGTGCTCCGCGTTCGTCGTCTGGAATGG CCGTCAGCGCTCCCTTCGGTGTTCAACTTGCTCCTTGTTCGCCCATCCAA TGCCATGCGCCGACTGCGCGTCTTCTCTGTTAGTTTTGCCTCCTCTCTGA CCCAGCGCCAGTATTTCCATCCAGGTCCGCTGTTCAACTTTCTCCTTCTT TCCCCATTCAATGTCTTTCGCCGACAGCAGTCTTCTCTGTTGATTTTACC ACCTGTCTGACCCATTCCATCCGGTCCCGCCAACTGCTGCTTCGACAGGT TCTTCACAGTGATAAGACTGATCAACGTCAAGCGACCAAGCAGCCTTCTC ATGTTTGGTGAGAGCAGTCTCCACTGCTGTTGTATCGCAGGACCGGAAAA CGCTGAAACACTGCACCGTTCGTACCACACCATCATAAATGGATGGGAAA GCCAAATACGTGTTTGCTGTACTATTGCCGCATCCACGGAGCTTCCTCCT TTGTCCTCTTTCCTGCGCCAAACTCTGCCAAAGTGGTTGATTTGAAGAGG GCTGGTGGTTTTACTTTCCCCGGCTGCCCCGGCGATTTGGTGGATATCCT CGAAACCTCCTCACGTATACAGGTCGTGAGTTCGAAAACAGTGGACTGGG ATATAGTCTCGCGCAAAATCTACCACCGCAGGAGTGGGAATCGTTCATTT CGCTAGAAAATACGACCATTTTGCGAGCAAACAAACTTCGATTCGAAGAA AGGTTTGGGAATTTTTCAACACACGCATGAAGACGATCTACTCTCCGACA TCAATTCATCACAACACTTCGTCATGCCACTTTTTGCGCAACTCAGCGTA ACCACGCATGTATGTGGAATCTCTGACATCCTCGGTTCACAAATCAACAC AACCGGTCATTGTTTGCTATAGTAGGCGTTTAAAGGTCGTTAACCCTCTC TGGCTAGTTTGTACCACCACACGGCGATATTGTGGCATGATTACCCGATG GCCATTAGAGCGTTCTTGTGACAGGCCTTCAGTAATCAATGCACATACCA TCCGCCTTACATCAGCTGACGCGGTGTGGCGTGTTTGTCTACTGTCTGTT CCTAGGGATTTCTATTCTGTTGATCCCGTTCTCCTTCGACTTCGTGGATG CCCTGTGCATCGCAGCGGTACTGGGCTTCACCAGGGACAAGATCGACGAG CTCAACGGGGTTGACTTCCGACAGTTTTTTTTTCGCGGGGGCGAAAATAA GTTGGCCGTCCCTGCGGCCGAGGACGAGCAAAAAGTTGATTGCGAAACGG GATCACTCTCAAGCCTATCGGTCCTGACCAAAAGCATGGTAGCCAAGAAG GGGCTACGCCCAGGACGCGGCCGCCTCGTCAGACGTCACACAATGATGCA CATTTCCTCCGCGCCACAAGGCCCGGTCAGCATGGAGCGGCAGGTCGGAG CAGACGCTATGCAACCGTCCACCAATGGGCCCCTCCAAATGTACGGTCCC CACCGCATCCTTAAGGGCCTATCTCGTAGATCGGGGAGCCTTTCTTTGCC CAGGCCCTCCCTAAACTCATCAGGACTTCTCGTGAAGCCGGACCCTAGTC TCCAGGTTGATGATCATTCGACTTCTTTGCACTGGGCACTTGCTGTCGCG GCGACGTTACAGCTGGTGCTTTCGGCGGTGAGCAACCAAGCAAAAACGTG A
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Coding sequence (CDS) from alignment at P-littoralis_Contig1103:103..4903+

>mRNA_P-littoralis_Contig1103.1.1 ID=mRNA_P-littoralis_Contig1103.1.1|Name=mRNA_P-littoralis_Contig1103.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1668bp|location=Sequence derived from alignment at P-littoralis_Contig1103:103..4903+ (Pylaiella littoralis U1_48)
GCACGCTTCTTTGTTGGGGATGACGAAGAGGTGGACCAAGACGCAACGGC
AGAGAAGTTCTTTCTCGTTGCCGGACTATCGACCGTTATGTTCGGTTTGG
CCTTCAACGTGCCGTTTATTGTGGCGCCTTCGGTGCTATATGCTGCACGG
CAATCTGGGATCACGATGGGGGGGCACCTTGCATCGCAAGCCATCGCCAA
CCTGGCAGCGGCATTATTTTTGTACTTCGCGGCACATCTTAGCTTCGTGT
CGTTCACACCGAGGGCACTACGGCTAGGAGCTGGGTGCGGGATAGCTATG
CTTGTCAGTATCATTGGCCTGCGCAGCTTGGATCTTTTGGTCGCCGGCTC
TTTCACACTACAGCCCCTCACCTGGCAAAACATACTTGGACTGGCCACCA
TCGTGGCCGCGTGTGTCAGGGCCTCTCGCGAAAATATAGTAAAAAAGTTT
ACTTGGGTCGTTGGAGTCCCCGCGGTGGTCACCGTGCTGGTGTATGCCGT
GATCGACCGGTCAAAGTTTCAAGGGTACTCCTCGGTAGAGCACCCGCCCC
TGTCCAACTGGGGAGATGGGAGTTTCGGCGTTGTAAACTTCTCCCAGCTA
CAGGAAGTCCCAAGCCTGCACTGGTTTTACACCATCAGAACATTTGCCAG
CATCATCATCAACATTTGCAGCATTATCCTGGTCTTGATCGACTCGGTCT
GTATTGAGGATGTGGACATCGAGCTGAAATCCTCCGGAGAATCGAACTTC
TCTGACGCCATCGGAGGTTCCCACAAGTTTCGGCACATGGTTTGCGCCAT
ACCGATGATGTCCTGCCTCGGGAACCTGATGGGTGTCACCACCCAGGCCG
CGTTCGTCCAGTCCATGATGGTCGTCTTTGCTGGTGGTACTACCGGTCTG
AGCGCTGCCGTCACAGGAGCCCTGCTCGTCTCGACAACCGTTCTATGGCC
ACTACTGCCGGTGGTAGTACCGGCGCACGTGTCGGGAGCTCTGACTGTAG
TCATCAGCTTGAGGTTCTTCACAGTGATAAGACTGATCAACGTCAAGCGA
CCAAGCAGCCTTCTCATGTTTGGGATTTCTATTCTGTTGATCCCGTTCTC
CTTCGACTTCGTGGATGCCCTGTGCATCGCAGCGGTACTGGGCTTCACCA
GGGACAAGATCGACGAGCTCAACGGGGTTGACTTCCGACAGTTTTTTTTT
CGCGGGGGCGAAAATAAGTTGGCCGTCCCTGCGGCCGAGGACGAGCAAAA
AGTTGATTGCGAAACGGGATCACTCTCAAGCCTATCGGTCCTGACCAAAA
GCATGGTAGCCAAGAAGGGGCTACGCCCAGGACGCGGCCGCCTCGTCAGA
CGTCACACAATGATGCACATTTCCTCCGCGCCACAAGGCCCGGTCAGCAT
GGAGCGGCAGGTCGGAGCAGACGCTATGCAACCGTCCACCAATGGGCCCC
TCCAAATGTACGGTCCCCACCGCATCCTTAAGGGCCTATCTCGTAGATCG
GGGAGCCTTTCTTTGCCCAGGCCCTCCCTAAACTCATCAGGACTTCTCGT
GAAGCCGGACCCTAGTCTCCAGGTTGATGATCATTCGACTTCTTTGCACT
GGGCACTTGCTGTCGCGGCGACGTTACAGCTGGTGCTTTCGGCGGTGAGC
AACCAAGCAAAAACGTGA
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