mRNA_P-littoralis_Contig1.370.4 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: D8LI35_ECTSI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI35_ECTSI) HSP 1 Score: 719 bits (1857), Expect = 4.670e-256 Identity = 372/474 (78.48%), Postives = 396/474 (83.54%), Query Frame = 1
Query: 52 MDFGEASDDEADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPG--GGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGS--GSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXA--AVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGKIISGGEDGAVKTYTVPERNND 1455
MDFGE SDDEAD KVRVKFVTK+PSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQR+ALSGEAVLEVEYLPALRQPTEAEHA+QPDWVS AGAG GLETFVTGCYDGCLRVYGP CKVTSL KAH PVTALCAVP+ G GG HAAGFLSGSKDMTARLWR AGSG N+SLE A+LRGHANSISA HA ++G+G G+ YTGDWSG VC+WD ACL A+ + G XXXXX V++ T PLA+FRAHAQAVTGLAGP G + TLYSASLDRAVKTWDAERQDC+HTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR QGETLTRASLSSHKQW+T VKWAPGSETMVLSC+ DG+VKLWDIRSTLPLHSAQAH+GKALCCGWQDGKI+SGGEDGAVKTY VPERN+D
Sbjct: 1 MDFGEPSDDEADAGKVRVKFVTKVPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRHALSGEAVLEVEYLPALRQPTEAEHADQPDWVSAVAGAGAGLETFVTGCYDGCLRVYGPGCKVTSLEKAHQAPVTALCAVPSLAGGRPGGAHAAGFLSGSKDMTARLWRRAGSGGNSSLEAAAILRGHANSISAAHAAASGSGDSGGAPRAYTGDWSGHVCLWDVACLEGGHADGDDAQGTKRRKTDTGAAAXXXXX--------VTELT-PLASFRAHAQAVTGLAGPGGVGRPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTGVKWAPGSETMVLSCSHDGSVKLWDIRSTLPLHSAQAHRGKALCCGWQDGKIVSGGEDGAVKTYVVPERNHD 465
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A6H5KQ32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ32_9PHAE) HSP 1 Score: 329 bits (844), Expect = 1.240e-106 Identity = 157/183 (85.79%), Postives = 163/183 (89.07%), Query Frame = 1
Query: 913 PLAAFRAHAQAVTGLAGPRGXXXXXXXXXA--AVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGKIISGGEDGAVKTYTVPERNND 1455
PLA FRAH+QAVTGL GP G + TLYSASLDRAVKTWDAERQDC+HTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR QGETLTRASLSSHKQW+TDVKWAPGSETMVLSC DGAVKLWDIRSTLPLHSAQAH+GKALCCGWQDGKI+SGGEDGAVKTY VPERNND
Sbjct: 33 PLAGFRAHSQAVTGLVGPGGVGGPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQDGKIVSGGEDGAVKTYVVPERNND 215
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A836CE58_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE58_9STRA) HSP 1 Score: 300 bits (769), Expect = 1.680e-91 Identity = 202/500 (40.40%), Postives = 251/500 (50.20%), Query Frame = 1
Query: 94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDP-------------------PTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVST----AAGAGEGLET-----FVTGCYDGCLRVYGPD--CKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASL------------EPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWD-AACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTG--LAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCL---GCSDSGR---MLATGHPDARVRIWDTR-KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGKIISGGEDGAVKTYTV 1437
+VRVKFVTK+ SIRVT+ P+AVPE+L RYGLSEVVNHLLG + P PFD+L+ GRFLR+SL M+ +A+SGE VLE+EYLPALRQPTE QPDWVS A AG G E + CYDGCLR+YG + + P+TAL A D R W +A E AVL GH NS++AV AG G+ +GDW GR+C+WD AA G A+AE+ G V + P A F+AH+QAVTG LAGP TLY+ S D ++K WDA+RQDCV T+ KAV C+ G D+ +LATGHPD R+R+WD R K GETLT A+L++ W+ VKWA GS S L + AHKG ALC W G + SGG+DG V+T+ V
Sbjct: 29 QVRVKFVTKLASIRVTDLPIAVPETLGRYGLSEVVNHLLGLNADTSAAAAAPHDAAPPSSKAPIPFDILIDGRFLRTSLARYMRAHAVSGETVLELEYLPALRQPTEESADTQPDWVSALAACAGAAGTGGERVAGPFLASACYDGCLRLYGASGGLDIAHSARVSAQPLTALAAXXX-----------XXXXXXDDAERCWLLAXXXXXXXXXXXXXXXXXXXXEQAAVLSGHQNSVAAVSFSPAG---GTHTAASGDWDGRMCLWDLAAAQGAAGADAEAGG-----------PGVKRRKRAAGEADAVVVELEPTAVFKAHSQAVTGVYLAGPD-------------TLYTGSWDHSLKAWDAQRQDCVRTMACAKAVACMDAQGGDDAAAASGLLATGHPDGRIRVWDVRTKAGETLTLATLAARGGWVYGVKWAHGSAYNXXXXXXXXXXXXXXXXSGAALRTLPAHKGAALCVAWHAGGVASGGDDGVVRTFKV 490
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A8K1CSP5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSP5_PYTOL) HSP 1 Score: 251 bits (641), Expect = 1.580e-73 Identity = 166/460 (36.09%), Postives = 227/460 (49.35%), Query Frame = 1
Query: 79 EADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGK-----IISGGEDGAVKTYTV 1437
+++ +VRVKFVTK +IRVTETP AVP L R GLS+VVNHLL P PFD L+ G FLR+SL MQR A+S E++L +EY+ AL +P + PDWVS + A + VTGCYDG +RVY + + KAH V A+ G S KD ++WR + S+ L VA L GH NS+ + S G + TG W V +W L ED N G V + I H VTG+A + S + DR V+ WD C TL +A+T + + +G +L T HPD VR+WD R + GE + + + SH +W++ V+W +E + SC DGAVK+WD+RST+P+H+ AH+GKAL W+ +SGGED +K Y+V
Sbjct: 2 DSEGPQVRVKFVTKNAAIRVTETPFAVPTRLNRQGLSQVVNHLLNTTTPRPFDFLIDGVFLRTSLDKYMQRNAVSEESLLILEYVEALPEPEQKNETNHPDWVSAVSVA---KDVIVTGCYDGQVRVYDLKGECLASVKAHQGAVKAVSVQFIQ-----GKEYRITSSGKDQMGQVWRF--NASSKQLSAVAALTGHLNSVDTIQLHSGGRQA-----LTGSWDNTVRVWH---LPEDD-----NAGEDDEAQPKKKQKNSAKSSGTVSFRQVEAEII----LTGHTSYVTGVA---------FHPTQEDYVVSGASDRTVRFWDLTTHLCKQTLTGNRAITDISVNANGLVL-TAHPDNCVRLWDPRASQSGENIVQKTFQSHTEWVSAVEWHQQNENLFASCGYDGAVKVWDVRSTVPIHTIAAHEGKALDVAWRPVSEPAVAFVSGGEDKQLKVYSV 424
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A2D4C6Q8_PYTIN (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6Q8_PYTIN) HSP 1 Score: 256 bits (653), Expect = 2.010e-73 Identity = 171/480 (35.62%), Postives = 240/480 (50.00%), Query Frame = 1
Query: 58 FGEASDDEADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMW------------DAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVS-DQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDG-----KIISGGEDGAVKTYTV 1437
F ++ +++ +VRVKFVTK +IRVTETP AVP L R GLS+VVNHLL P PFD L+ G FLR+SL MQR+ALS E++L +EY+ AL +P++ PDWVS + A + VTGCYDG +RVY + + KAH V A+ + S KD ++WR + + L VA L GH NS+ A+ A+ A A TG W V +W DA + ++A+S+G VS Q H VTG+A A + SA DR+++ WD C T+ +A+T + + +G M+ T HPD VR+WD R + GE+L + + SH++W+ V W P +E + LS DGAVK+WD+RST+PLH+ AH GKAL W+ +SGGED +K ++V
Sbjct: 163 FTTSAAMDSEGPQVRVKFVTKNAAIRVTETPFAVPMRLNRQGLSQVVNHLLNTAEPRPFDFLIDGNFLRTSLEKYMQRHALSEESMLTLEYVEALPEPSQKNETNHPDWVSAVSAA---QDIVVTGCYDGQVRVYDLEGNCLASVKAHQGAVKAVSVQLAKQ-----NVFLITSSGKDQMGQVWRF--NAATRQLSAVASLTGHLNSVDAI-ALDARAER----ALTGSWDNTVRVWMVPSGSEAVEVSDAQPKKKQKSDAKSSG-------------------------VVSFSQLEAEIVLVGHTSYVTGVA---------FHPTDAHQVVSAGSDRSIRLWDLTTHQCKQTMKGNRAITSVSVNANG-MVVTAHPDHCVRLWDPRATQNGESLVQRTFQSHREWVNAVSWHPTNEHLFLSGGYDGAVKVWDVRSTIPLHTVAAHDGKALDVAWRPVDEPAVSFVSGGEDKQLKLFSV 592
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: D0NDP0_PHYIT (Ribosome biogenesis protein WDR12 homolog n=12 Tax=Phytophthora TaxID=4783 RepID=D0NDP0_PHYIT) HSP 1 Score: 241 bits (616), Expect = 7.850e-70 Identity = 171/461 (37.09%), Postives = 232/461 (50.33%), Query Frame = 1
Query: 94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGR-DPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGP--DCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFL--SGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLA-AFRAHAQAVTGLA-GPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQ--GETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGK----IISGGEDGAVKTYTV 1437
+VRVKFVTK SIRVTETP AVP L R GLS+VVNHLL D P PFD L+ G FLRSSL +Q +S EA+L +EY+ AL +P + ++ PDWVS A + E VTGCYDG LRVY DCK + KAH V A+ + + F+ S KD A+LWR S L P+A L GH NS+ AV + SG+ +V TG W V +W EDS+E S+ VS + + H VTG+A P+ + SA DR+V+ WD Q C L +AV+ L + +G +L T HP R Q GE++ + + SHK+W++ V W P +E + +S DG K+WD RST+PLH+ AH+GK L W++ + ++GG+D + + V
Sbjct: 7 QVRVKFVTKDGSIRVTETPFAVPSRLNRRGLSQVVNHLLATGDSPRPFDFLIDGLFLRSSLDKYLQTNDVSEEALLTLEYVEALPEPQKQNGSDHPDWVSAVASLDD--ELVVTGCYDGVLRVYDAQGDCKAS--VKAHQGAVKAVSVSSS-------KSGEFVVASSGKDQLAQLWRYTVKSSK--LSPLAALTGHLNSVDAVQLHA----SGNRVV-TGSWDNTVRVWQTPNGSEDSSEQRSS---------------KKHKKTEDDAGAVSFRQLEAEIVLVGHTSYVTGVAFRPKTSEHDED------VVVSAGSDRSVRLWDLVTQSCSQALAGNRAVSDLTVNATGLIL-TAHPXXXXXXXXPRAQQSGESIVQRTFRSHKEWVSSVSWHPSNEHLFVSGGYDGTAKVWDARSTIPLHTVSAHEGKVLDLSWRNQEESVAFVTGGDDKKLNFFNV 427
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A5D6YFB0_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFB0_9STRA) HSP 1 Score: 241 bits (615), Expect = 1.290e-69 Identity = 176/457 (38.51%), Postives = 241/457 (52.74%), Query Frame = 1
Query: 94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCA--VPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGW--QDGKII---SGGEDGAVKTYTV 1437
+VRVKFVTK +IRVTETP AVP L R GLS+VVNHLL P PFD LV G+FLR+SL + ++ S EA+L +EY+ AL +P + A PDWVS A A GL VTGCYDG +RV+ + + KAHH V A+ VP + KD T +LW + + +A GH NS+ AV G + TG W V +WD +A + + XXXXXXXXXXXXXX + + + + H VTG+A + S + DR+V+ WD C TL +A+T + + G +L+ HPD VR+WD R + GE+L + + SSHK+W++ V+W P T+ S + DG+VK+WD RS++PLH+ AH GKAL W +D + SGGED +K ++V
Sbjct: 10 QVRVKFVTKDAAIRVTETPFAVPARLNRQGLSQVVNHLLNLPVPRPFDFLVDGQFLRTSLEKYLLQHGASEEALLTLEYVEALPEPEKQREANHPDWVSAVAAAHTGL--VVTGCYDGHVRVHDAAGECVAALKAHHGAVKAVSVQRVPEKK-----REFVIATSGKDQTGQLWLF--DAAKKRISALAAFTGHLNSVDAVALRVTGEQA-----LTGSWDNTVRVWDTK-----AAVSAAXXXXXXXXXXXXXXXXXASGASAVSFRQLEAEVVLVG----HTSFVTGVA---------FHPQHEHLVVSGASDRSVRVWDLTTHSCAQTLTGNRAITDISVNADGLVLSA-HPDHCVRLWDPRASQAGESLVQRTFSSHKEWVSAVEWHPTRATLFASASYDGSVKVWDARSSVPLHTLAAHDGKALDVAWRLEDAAHVAFASGGEDKQLKFFSV 433
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A1V9ZBE6_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBE6_9STRA) HSP 1 Score: 239 bits (611), Expect = 2.500e-69 Identity = 162/452 (35.84%), Postives = 220/452 (48.67%), Query Frame = 1
Query: 94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFV-TGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGK---IISGGEDGAVKTY 1431
++RVKFVTK P IRVTETP AVP L R GLS+VVNHLL P PFD L+ FLR++L + + L+ EAVLE+EY+ A +P + PDW+S A G FV TGCYDG LRV+ + KAH + ++ + ++GSKD T + W++ SN L V V GH NS+ V AI GD++ +AEAE+ ++ + L A AVT + T YSA++DR++K WD + C T+ ++ L S SG M+ T HPD +R+WD R K G TL + + SHKQW++ V+W+ SET LS DG VK+WD RS++PL + AH GKAL W G+ +SGGED +K Y
Sbjct: 7 QIRVKFVTKNPEIRVTETPFAVPIKLARAGLSQVVNHLLATAEPKPFDFLIDDNFLRTTLEKYVVQNNLNDEAVLELEYVEAHLEPETKHSQDHPDWISAVAAHGG----FVATGCYDGILRVFTTAGAPVAQIKAHDSVIKSVAM----------NGNTIVTGSKDHTLKTWKL----SNGKLTAVGVGAGHLNSVDTV-----------AIDAEGDFALXXXXXXXXXXXSLAAEAEAT---------DKSVKKQKTAGGTKASLVQAEAKLVLPGHTAAVVAVT------------FDPTDSSTAYSAAMDRSIKLWDLSLERCKQTMAGSSTISALSVSTSG-MVLTAHPDTAIRLWDPRAAKTGTTLVQKTFQSHKQWVSAVQWS--SETQFLSAGYDGTVKMWDARSSIPLFTLAAHAGKALDAAWIQGEKPAFVSGGEDCQLKFY 405
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A1Y1IFE5_KLENI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFE5_KLENI) HSP 1 Score: 238 bits (607), Expect = 1.530e-68 Identity = 151/454 (33.26%), Postives = 218/454 (48.02%), Query Frame = 1
Query: 85 DRRKVRVKFVTKIPS-IRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCS-DSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGW-QDGKIISGGEDGAVKTYTV 1437
+ R+V+V+FVTK+P RVT AVP L RYGLSEV+N LL + PFD LV G LR+SL S++ LS E L +EY+PA+ P DWVS G + V+GCYDG R++ + + + H +T+ +P + ++ SKD T R+W++ G+ S S + VLRGH+ +I +V A +G V +G W + +W + ED A + H+Q V+ + R A T++SAS D +V+TWD + T+ K + L + G +LATG D +RIWD+R T + L SHK WIT VKW +LS + DG VK+WD+RS +PLH+ QAH KALC W Q+ I+SGG D ++ + +
Sbjct: 7 EERQVQVRFVTKLPEEYRVTNASFAVPARLTRYGLSEVINSLLSTEKLRPFDFLVGGELLRTSLESLLVSKKLSAETTLTIEYIPAVGLPKPVSSHVHDDWVSAINGTSP--DVLVSGCYDGVARLWSSSGEALTSLQGHSDAITSTAVIPR-----ASGSCDVITASKDRTLRVWQVKGTDSQPSGDLHQVLRGHSAAIQSVVASPSGNE-----VASGSWDTTIKVWSVSRDAEDGGSAPKR---------------QRVEDSGAAPAGEQEAREARVTLEGHSQCVSAVDWSR-----------ADTIHSASWDHSVRTWDVQAAVNTSTITGSKVILALSVGGEGGALLATGGADPAIRIWDSRDSSSTGSAIQLLSHKGWITAVKWHKTRTHQLLSTSHDGTVKMWDVRSKVPLHTVQAHTVKALCVDWFQEATIVSGGADNQLRFHAL 422
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A7S0L654_9EUKA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L654_9EUKA) HSP 1 Score: 236 bits (603), Expect = 8.560e-68 Identity = 156/477 (32.70%), Postives = 227/477 (47.59%), Query Frame = 1
Query: 43 AVTMDFGEASDDEADRRKVRVKFVTKIP-SIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGA------------GEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSN---ASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDG-KIISGGEDGAV 1422
AV M AS+ V+ F T++P RV++ P+++P L RYGLSEV+NHLL + PFD +V G LR SL M R+ L+GE + +EY+ L P A + PDWVS+ A A E + ++GCYDG R +GP ++ + H V A+C + G G A L+ SKD T R W + A E + V GH +S+ A A AG +G W G++C+W A +AE + + PL+ +AH++ ++GL A LYSAS D V+ WD + + + KAV CL S + + TGH D +R+WD R++G L+ +HK W++ V WAP ++ S + DG+V+LWD RST+PLH AHK K+LC W +++SGG DG +
Sbjct: 8 AVGMASASASEPH-----VQCIFTTRLPPQWRVSDAPLSLPTRLSRYGLSEVINHLLSTETTRPFDFVVNGELLRGSLEKAMTRHGLTGEQAVMIEYVELLAPPNLACDSNHPDWVSSVASARTHAMLSGDPTASERVPLVLSGCYDGSGRAWGPGGELVCTMQGHTSGVKAVCWL------GRGLA---LTASKDRTLRAWSFQSAAKEQLTAKCEQLYV--GHTDSVEAACANPAGDR-----FCSGGWDGQLCIWRAPDTSVSTAEVDHE------------------PAAKRARTPAVSEAHPLSKMQAHSECLSGLC-----------WRTAALLYSASWDGTVREWDVNAESSTSAVTSQKAVLCLDVSLASASIVTGHSDHCLRVWDVRQRG--LSARLTLAHKSWVSGVAWAPHQPLLLASASHDGSVRLWDTRSTVPLHELPAHKPKSLCVSWDGSDRLVSGGADGVL 432 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1.370.4 >prot_P-littoralis_Contig1.370.4 ID=prot_P-littoralis_Contig1.370.4|Name=mRNA_P-littoralis_Contig1.370.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=469bp MDFGEASDDEADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNback to top mRNA from alignment at P-littoralis_Contig1:1615945..1622255- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1.370.4 ID=mRNA_P-littoralis_Contig1.370.4|Name=mRNA_P-littoralis_Contig1.370.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=6311bp|location=Sequence derived from alignment at P-littoralis_Contig1:1615945..1622255- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1:1615945..1622255- >mRNA_P-littoralis_Contig1.370.4 ID=mRNA_P-littoralis_Contig1.370.4|Name=mRNA_P-littoralis_Contig1.370.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1407bp|location=Sequence derived from alignment at P-littoralis_Contig1:1615945..1622255- (Pylaiella littoralis U1_48)back to top |