mRNA_P-littoralis_Contig110.63.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig110.63.1
Unique NamemRNA_P-littoralis_Contig110.63.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A6H5J7N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7N0_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 5.110e-144
Identity = 201/229 (87.77%), Postives = 209/229 (91.27%), Query Frame = 2
Query:   44 MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKVNELDYWRENREHVEKMEKLKGEKKKERQRDAQIRKG 730
            MGNK P PPPPSGER+ RCKELFML NENIE  WEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNV+NNIQGAMSHLQLDE+GRLPFDSFKIMNK+FPQVLYPVFRLQQSTQRA+LGN WWK KVNEL +WRENREH           +KERQR+AQIRKG
Sbjct:    1 MGNKIPGPPPPSGERVARCKELFMLTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVTNNIQGAMSHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAILGNKWWKNKVNELGFWRENREHXXXXXXXXXXXRKERQRNAQIRKG 229          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: D8LMG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG3_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.760e-115
Identity = 160/170 (94.12%), Postives = 166/170 (97.65%), Query Frame = 2
Query:  113 MLKNENIEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKV 622
            ML NENIE  WEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLME+EELHHFIKVLHSSNV+NNIQGAMSHLQLDE+GRLPFDSFKIMNK+FPQVLYPVFRLQQSTQRA+LGN WWKKK+
Sbjct:    1 MLTNENIEALWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEMEELHHFIKVLHSSNVTNNIQGAMSHLQLDEHGRLPFDSFKIMNKNFPQVLYPVFRLQQSTQRAILGNKWWKKKM 170          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A835Z730_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z730_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.350e-62
Identity = 93/171 (54.39%), Postives = 127/171 (74.27%), Query Frame = 2
Query:  143 WEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQ-AVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKVNELDYWRENR 652
            W++FK+ D   +G IS   +F+ ++ E ++  G A+F L+D +D + +EFGEFVQ AVCTF C    +ML+F FMVYDKD+SG+ME+E+LH FI  LH+S+VSNN+Q AM  L LDE GRLPFDSFK++NK +PQV+YP+FRLQQ+T R V+G  WW  K+  L+Y R +R
Sbjct:    1 WDIFKRHDTTHDGYISVDTYFDKVVFEPKSTVGQALFALIDTDDPDKIEFGEFVQQAVCTFACLSPAEMLRFAFMVYDKDKSGVMEVEQLHDFIWKLHNSDVSNNVQHAMQDLTLDELGRLPFDSFKLLNKQYPQVMYPLFRLQQNTMRFVMGPKWWASKLRRLEYERVHR 171          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A7S2D7S8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D7S8_9STRA)

HSP 1 Score: 180 bits (456), Expect = 4.500e-52
Identity = 80/192 (41.67%), Postives = 124/192 (64.58%), Query Frame = 2
Query:   44 MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKK 619
            MGN  P     + +R+ R  E+  L   +I+GFW VF++ D  R G+++ + FF  I+QE RN FGNAIF L+D ED + LEFGEF+Q V T+CCF   ++L+FCF ++D++++G ++ +EL  F+ VLH+     N++ A   ++    G+  F  F+ +NKDFP VLYP FR+QQ+    ++G  WW++K
Sbjct:    1 MGNSAPV----ADDRVQRAAEMVKLNVSDIKGFWNVFRKCDYDRIGIVATEDFFTKIVQEGRNMFGNAIFELIDAEDPDKLEFGEFLQGVVTYCCFDELEILQFCFFIFDREKNGYIDQDELKFFVDVLHNEQQVANVRTAFQSIKFQTDGKFDFPEFQKLNKDFPTVLYPAFRMQQNMMLNIMGEDWWRQK 188          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A2R5GWK3_9STRA (Calmodulin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWK3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.100e-43
Identity = 72/189 (38.10%), Postives = 119/189 (62.96%), Query Frame = 2
Query:   44 MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWW 610
            MGNK P P     +R+ +  ++  L  + I  FW +F+++D    G I  + F+  +I+EER  FG+++F LVD +   TL+F EFVQ + T+  F   D+LKFCF V+DKD++G ++ +ELH  +++LH +N ++N + A+++   +  G++ F+ F+ MN  FPQ+L+P FR+QQ+     LG  WW
Sbjct:    1 MGNKIPVP----DDRLQKTIDMLKLSKKEINKFWRIFQKYDRDHGGTIDVEEFYR-LIEEERTVFGDSLFELVDIDCSGTLDFSEFVQTIATYALFARVDILKFCFFVFDKDKNGYIDSDELHALVEMLHGNNPTSNCRTALANFDTNSDGKIDFEEFQAMNVRFPQLLHPAFRMQQNMMINTLGEQWW 184          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A8J2S6B5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S6B5_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.740e-40
Identity = 75/211 (35.55%), Postives = 126/211 (59.72%), Query Frame = 2
Query:   71 PPSGERITRCKELFMLKNENIEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKVNELDYWRE-------NREHVEKMEKLK 682
            P + +RI +  + F LK ++I   W +FK+ D +R  +I+   F++ I+   R  F + +F L++  D E+++FGEFV AV T+C F + ++LKFCF V+D+D+ G +  EE+  F+  +H + +S N++ A+ +L+  + G+  F+ FK M+  +P VL+P FRLQ +  +A+ G  +W+ K  EL   +E       NRE  EK E  K
Sbjct:   14 PTADDRIAKAMQTFNLKEKDIRVLWHMFKKHDKERRSIIAISDFYDKIVFVPRTIFCDGLFDLIEAADSESIDFGEFVAAVTTYCFFEIPEVLKFCFFVFDRDKKGFITQEEMRLFVDAMHGNEMSTNVEFALDNLKYRKDGKFDFEEFKGMHHLYPSVLFPAFRLQNAMMQAMGGEQFWESKKLELSMQKEDERKREANREAREKAEAYK 224          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A7S1UH45_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UH45_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.270e-38
Identity = 78/209 (37.32%), Postives = 118/209 (56.46%), Query Frame = 2
Query:   44 MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFDLKREGLISRQAFFEGII--QEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKVNELDYWRENREHVE 664
            MG     PP    ERI +  +   + +  I   W+ F+ +D    G IS+  FF  I   +E   +FGNAI  L D +DE TL+FG+F Q   TF  F   +ML+FCF V+DKD++G M+ +EL+ F+  ++ + V +NI   +  L  DE GRL +  F  M++ FP VLYPVF+ Q + +  V+G  WW +++  L   R+++E  E
Sbjct:    1 MGGGHSHPPIDDDERILKVVDTLEMTSNEIGMLWDAFRAYDHNAVGSISKIDFFCNICDQREWETDFGNAILELCDVKDEGTLDFGQFTQICGTFGAFQTKEMLQFCFFVFDKDKNGHMDEDELNAFVADIYGNAVPSNILSVIKGLNFDEDGRLYYPQFAAMHRQFPAVLYPVFQFQTNLRTNVMGAKWWNQRLARLRMDRDDKEAEE 209          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: K3WTK6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTK6_GLOUD)

HSP 1 Score: 139 bits (350), Expect = 8.680e-36
Identity = 77/235 (32.77%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   44 MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFD-----------------------LKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKVNELDYWRENREHVEKMEKL 679
            MG    A  P   ER+ +C     L++ ++   +  F ++D                         + G I R  F++ I  E+ +EFG+AIF L+D ++   L+F E+V A+  FC     D+LKFCF V+D DR+G +E  EL H +++LH    ++N++ A++    +  G++ FD FK +N   P +LYP FR+QQ+ +   +G SWW+KK+ EL        HVEK ++L
Sbjct:    1 MGGVFSAQVPVPDERMLQCIVKLKLEDSDLRTLYGRFSKYDQEVTSCLWFLIVSAAGGQCGALIFSKSGTIDRSEFYKSI-DEKNSEFGDAIFALIDEDNSGVLDFSEYVDALGKFCILSKEDILKFCFNVFDSDRNGTIEGTELTHLLEILHEDGQTSNMKQALASFDFNGDGKIDFDEFKQLNGLLPSLLYPAFRIQQNMRIFTMGESWWRKKIEEL--------HVEKEKEL 226          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A6A3K789_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K789_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.310e-35
Identity = 70/203 (34.48%), Postives = 115/203 (56.65%), Query Frame = 2
Query:   44 MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFDLK-------REGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKVNEL 631
            MG    +  P   ER+        L  +++   +  F ++D +       + G I R  F+  I  E+ +EFG+AIF L+D ++   L+F E+V+A+  FC     DMLKFCF V+D D++G +E EEL H +++LH+   ++N++ A+     +  G++ F  FK +N  FP +LYP FR+QQ+ +   LG  WW++K+ EL
Sbjct:    1 MGGMLSSQVPVPDERMQHMITKLKLTAKDLRVLYGRFSRYDKEVLRSLTCKSGTIDRSEFYTSI-DEKHSEFGDAIFALIDEDNSGVLDFSEYVEALGKFCLLNKEDMLKFCFNVFDDDKNGTIEGEELTHLLEILHADEQTSNMKHALKTFDFNGDGKIDFAEFKQLNTQFPSLLYPAFRIQQNMKIFTLGEKWWERKIEEL 202          
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Match: A0A7S2C3E2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3E2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 3.460e-35
Identity = 75/221 (33.94%), Postives = 123/221 (55.66%), Query Frame = 2
Query:   44 MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFDLKREGLISRQAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTDMLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQG----AMSHLQLDEYGRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKV----NELDYWRENREHVEKMEKLK 682
            MG     P P S  R  +  EL  +  + +  FW  F+  D K  G +    F++   +E+R+ FG+AIF L+D     +L+FGEFV AV T+C F   +ML+FCF ++DKD++G +E EEL   + +L+    ++ ++G    A+  L  ++ G++ F  FK  N+ FP + YP FR+Q +    + G++WW+KK     +E D  R   E+ ++ EK +
Sbjct:    1 MGAANSVPTPDS--RTLKAMELGHINMKELGIFWSAFRSIDKKLTGSVDISDFYK-FFEEKRSIFGDAIFELIDCNQSGSLDFGEFVHAVVTYCLFEQDEMLRFCFYIFDKDKNGYIEQEELRWMVNILYGLGPTDKLKGNTKVAVDRLDFNDDGKVDFKEFKEFNRSFPALFYPAFRIQVNMINLIAGDAWWEKKKRWLQDEKDRKRAREEYSKRKEKAR 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7N0_9PHAE5.110e-14487.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMG3_ECTSI1.760e-11594.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z730_9STRA1.350e-6254.39EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A7S2D7S8_9STRA4.500e-5241.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R5GWK3_9STRA2.100e-4338.10Calmodulin-like protein n=1 Tax=Hondaea fermentalg... [more]
A0A8J2S6B5_9STRA1.740e-4035.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1UH45_9STRA2.270e-3837.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K3WTK6_GLOUD8.680e-3632.77Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6A3K789_9STRA2.310e-3534.48Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A7S2C3E2_9STRA3.460e-3533.94Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:301879..305600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LMG3
PFAMsEF-hand_1,EF-hand_5,EF-hand_7,EF-hand_8
Model size730
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K04718,ko:K06268
KEGG ReactionR01926,R02976
KEGG Pathwayko00600,ko01100,ko04010,ko04020,ko04022,ko04071,ko04072,ko04114,ko04218,ko04310,ko04360,ko04370,ko04371,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map00600,map01100,map04010,map04020,map04022,map04071,map04072,map04114,map04218,map04310,map04360,map04370,map04371,map04380,map04650,map04658,map04659,map04660,map04662,map04666,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
KEGG ModuleM00100
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.67e-116
EggNOG OGsCOG5126@1|root,KOG0034@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-05_002650.1
EC2.7.1.91
Descriptioncalcium ion binding
Cds size687
COG categoryDTZ
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.63.1prot_P-littoralis_Contig110.63.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig110 301922..305600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789434.090532-UTR-P-littoralis_Contig110:301878..3019211680789434.090532-UTR-P-littoralis_Contig110:301878..301921Pylaiella littoralis U1_48UTRP-littoralis_Contig110 301879..301921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789434.1336546-CDS-P-littoralis_Contig110:301921..3019941680789434.1336546-CDS-P-littoralis_Contig110:301921..301994Pylaiella littoralis U1_48CDSP-littoralis_Contig110 301922..301994 +
1680789434.1439867-CDS-P-littoralis_Contig110:302229..3022841680789434.1439867-CDS-P-littoralis_Contig110:302229..302284Pylaiella littoralis U1_48CDSP-littoralis_Contig110 302230..302284 +
1680789434.153419-CDS-P-littoralis_Contig110:302665..3027881680789434.153419-CDS-P-littoralis_Contig110:302665..302788Pylaiella littoralis U1_48CDSP-littoralis_Contig110 302666..302788 +
1680789434.170368-CDS-P-littoralis_Contig110:303289..3034191680789434.170368-CDS-P-littoralis_Contig110:303289..303419Pylaiella littoralis U1_48CDSP-littoralis_Contig110 303290..303419 +
1680789434.1788747-CDS-P-littoralis_Contig110:303766..3038621680789434.1788747-CDS-P-littoralis_Contig110:303766..303862Pylaiella littoralis U1_48CDSP-littoralis_Contig110 303767..303862 +
1680789434.1866503-CDS-P-littoralis_Contig110:304462..3045611680789434.1866503-CDS-P-littoralis_Contig110:304462..304561Pylaiella littoralis U1_48CDSP-littoralis_Contig110 304463..304561 +
1680789434.2029045-CDS-P-littoralis_Contig110:305489..3056001680789434.2029045-CDS-P-littoralis_Contig110:305489..305600Pylaiella littoralis U1_48CDSP-littoralis_Contig110 305490..305600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig110.63.1

>prot_P-littoralis_Contig110.63.1 ID=prot_P-littoralis_Contig110.63.1|Name=mRNA_P-littoralis_Contig110.63.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MGNKTPAPPPPSGERITRCKELFMLKNENIEGFWEVFKQFDLKREGLISR
QAFFEGIIQEERNEFGNAIFTLVDPEDEETLEFGEFVQAVCTFCCFCVTD
MLKFCFMVYDKDRSGLMEIEELHHFIKVLHSSNVSNNIQGAMSHLQLDEY
GRLPFDSFKIMNKDFPQVLYPVFRLQQSTQRAVLGNSWWKKKVNELDYWR
ENREHVEKMEKLKGEKKKERQRDAQIRKG
back to top

mRNA from alignment at P-littoralis_Contig110:301879..305600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig110.63.1 ID=mRNA_P-littoralis_Contig110.63.1|Name=mRNA_P-littoralis_Contig110.63.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3722bp|location=Sequence derived from alignment at P-littoralis_Contig110:301879..305600+ (Pylaiella littoralis U1_48)
GAAAAGGCTTTAGGTGCAATCACGATGAACTACGACGTTCGATATGGGAA ATAAGACCCCTGCTCCCCCACCACCTTCGGGAGAGAGGATAACACGATGC AAGGAACTATTCATGCGTGAGTAAACCAGTGGTCACTGGACTGTATTATA TACTACTCGAAGTACAGTAGTATTTACATAATGGGCGAGCGGATGCTCCC TAAAAAAAGCGCGTCGCGCCGACACACTCGCACAAAAAGCACGCCATGGA TATAGCCCTTCATGCGTGTGCACCACAATGACACCGTCGTGGCGATCGCA CGAAGTGAACGCGTTGTACTGATCGGGATTCCGCGGTCTTCCCTTTCGCA GTAAAAAACGAGAACATCGAAGGCTTTTGGGAGGTCTTCAAGCAGTTTGA TCTCAAGTGAGTGCGTGTTGCTAAAGTAACATAAACCTCCGCACGGCAGT CAAGACTGTCCGCAAACTGGAAGATCTCTTCAGCCATGCCCGTCCAGCTT CTCACAGTTCTCCACCTAAAAGCAAGGATTACCGGCGGAACGGGGTGTGT TTGCCAATACTCACGAAGGAGTTCTAGAGGACAGCAGCAGCAGTTGTACT CGTACGAAATACGACGTATAGACTATTTTGGGAACGAAGGCGGATCAACG TACCTCTGTACTACATGCACGTACGTACATACATGCATCATGTGCCATGT ATGTTAGCATAAACTTGAATGTACAGTTTGTGATCACCTTTCGTATTTGG GTGGTGAATCTTCTTTCTTGTTTTTGCCGGGAAATAGGCGAGAGGGCTTG ATAAGCAGGCAGGCCTTTTTCGAGGGCATCATCCAGGAAGAAAGGAACGA ATTCGGTAATGCCATATTTACACTTGTTGACCCTGAGGATGAAGAAACTC TGGAGTTTGGGTGAGCTGGCACTGAAAGGCATTTGTTGATTACGGAAAAA AATGCAATCTGGAAAAGGACCCAACCTCAAAGTAAATTACTCAACAGCAT TTACCTACCTGCTGTGCCTGGCTAGTGTAGGAAACATTTGATCATCACAA CAACAGCAGGGGTAGCGATACCAACCGTATTTGGACTGCTAGACAAAGTT TGCCGGGCAACACAGACTTGCTTTGTAGTAGGGCTCGTATTCCACATTGA AAGTATAGGGTGGTCTCATGACAGAATTCATCAGAGTCAATGTCCCCCCA GATGCAAAAACAACACGAAGGAGAGGTTGAATCAATCAACATGACATCTG TCTGTGGGTAACAACTGGTGAAATATGGTGGGACGAACCTCACTTCCCTA CGTTAGTGTGATACTGCTTTCACGTCCATCCTTCTTCATGATGGATTGTG GCGTGTTCTCATGACCACAACTCATTGCATTTGTCTGCGTGTTGGTTTTG GGATGAAGCAGCGAGTTCGTCCAGGCGGTGTGTACTTTTTGTTGTTTTTG CGTGACCGACATGCTCAAGTTTTGCTTCATGGTTTACGATAAGGACCGAT CTGGACTCATGGAAATCGAAGAGCTTCACCATTTTATCAAGGTTAGTAAT TTCCATCTTGACCTATAACCGTCGAATCGTCCTTGCGTAAAAATGCTTGC ACTTACATATTTTTTTTTTCGTATTTTGCCTCGTTTTTTTTTCGTATTTT GCCTCGAGGGTATGATGGTCAAGCCTGACTGCCTACATGGATCCTGAGCG AGATTGATGACACGGCTTGATATGTTTCGACGCCCATGCAACCAGAAATC CTCTGACTGTCGTGAAGGATTGCTACGTCGATACCAGTCTATGTACAAAA TCTGAATATCAAACATTCAACCATCAGCAAAAGGCGGGAACGCCCTGTTT CGGTGTTTGTCTTGCGTGCCACGTCGCTGGTTGGTCAGGTGCTGCACAGT TCTAATGTGTCCAACAACATCCAGGGTGCCATGTCACACCTGCAGCTGGA CGAGTACGGAAGACTTCCATTCGATAGCTTCAAGGTACGGTATGGTGTCC ATCAGTCAAGGTACATTCGCGTGATGACACCACCAACTTGCTTGAAGAAG GTGCAGTCGTAAGATATTTGTAATGGATTAAAACGTCAAAGGGGGTATGT GGTGTGTGGGTATGCGGACGAGGCATGTGAATCTGGTGGTCTAAGACGAC GCTTTTGGCTTCACTGAGAAAGATACGGGTGTAATACTGTCCCGAGCTGG GCAGAATGATACGGCTGTAATACTTTTCCGAGCTCGGCAGCTCACCGGCG TGCTTGTAGGCTTGCAAGTATGATCGGACTGCAATATTCCAGCGACTGAC TCTCTCTTCTTGGCCATTCTCTCTGCTTCCAGCATACTATATGATATGAT CGAGACTCCAACGAATCACAAAGCCAGTTGGTGAGCCTCGCCGGAAATGT AGAGCACACGCGTATTGATGATGGATGAGGAGTTTGCATACGCTATTGAA CTGAAAATAGTAAAGAACCGCTCGAGGATTATTGATGGTTTCGTCCTGTG TGGTCATAGAAGCCGTCTCTCTTAAACTGTATGCCAATCGAAAAGCTCTC GATAGTTTCGCCATATTTAATCCTTCCCCCTCAGATCATGAACAAGGATT TCCCTCAAGTGCTTTATCCTGTCTTTAGGCTTCAGCAATCAACACAGCGC GCTGTCCTGGGCAATTCGTGGTGGAAGAAAAAGGTGATTTGCACCGCCTA GAATACGATTACACCAGCGGTGGGGATGTGCCACTTTGCCCGAGCGGAGG AGGTGAATACCTGTTTGGTTCTAAAATGTTGTGTGGTGTCGACGATGTTG TGCCGCGCTATTGATGACGATCAGCTTTCAAACGAAAGTATGTTCCGGCT ATTGTTTCTTTCGTCGGCGTCTCTTCAACACCTACCTGGTACTTGCTTTT AAACAGAGCCAGAGCGCCATAAATAAAGCAAGATATTCGTGAGTGTGTGT TGCCATCCCATTTGTTCTGGGCACCAGTCTACGCCGGTAATGACTTGTGC TGTGAGGGTCTTCCAGTCTTTCTACGAAAGCCCTCCCACAAATCGGTGTT TTTCTTTCGGGAACGTTTCGTGGCTTTTTGGGACGAGGAAAGTGGCTATG AAAAAAACAAGAGTTTGAACAAAATTTCGAAATCGACGTGAAGGGCGATT TGATATACACCGTGGTGGTATTTCGGGCGGTCGTGGGTACCATCGAAAAC TGCCATCAGGTGTATTTTAGTATTGTTCGGTAACTACACGGTGTGGAGTT GACAACGAAGATGACCATGTGGCGGAGAAAGCGAAATGCGCAAAACGAGA AAACGAGCGGCGAAAACGCCGTTATGTTCGCCATTTGCTCTTTACAACCG ATGCTGGCGAGAGGTAGACTTCCTTCCAGACGTCAGGAAACCACACATGA CGCATGATTTGATATCACTCTAGGTGGGAGGTTTCGGATACACCCAAGAG ACCGAAAAGAAACTTTGGGGCAGTGGCAGCATTCCTCTGATTTCGTTTGA AACATTCTCAACCTTTGCTTTCGTCGCTCCTGGTGTAAGTCACGGGACTT GGTTTTCAGGGCCTTGCGGAACTCCACGAAAATGACCAGCACGACATTGA TTCATCGGCAGGTAAACGAGCTTGACTATTGGCGAGAAAATAGGGAGCAC GTCGAGAAGATGGAAAAGTTGAAGGGAGAGAAAAAGAAGGAACGACAGCG AGATGCACAGATAAGAAAAGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig110:301879..305600+

>mRNA_P-littoralis_Contig110.63.1 ID=mRNA_P-littoralis_Contig110.63.1|Name=mRNA_P-littoralis_Contig110.63.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig110:301879..305600+ (Pylaiella littoralis U1_48)
ATGGGAAATAAGACCCCTGCTCCCCCACCACCTTCGGGAGAGAGGATAAC
ACGATGCAAGGAACTATTCATGCTAAAAAACGAGAACATCGAAGGCTTTT
GGGAGGTCTTCAAGCAGTTTGATCTCAAGCGAGAGGGCTTGATAAGCAGG
CAGGCCTTTTTCGAGGGCATCATCCAGGAAGAAAGGAACGAATTCGGTAA
TGCCATATTTACACTTGTTGACCCTGAGGATGAAGAAACTCTGGAGTTTG
GCGAGTTCGTCCAGGCGGTGTGTACTTTTTGTTGTTTTTGCGTGACCGAC
ATGCTCAAGTTTTGCTTCATGGTTTACGATAAGGACCGATCTGGACTCAT
GGAAATCGAAGAGCTTCACCATTTTATCAAGGTGCTGCACAGTTCTAATG
TGTCCAACAACATCCAGGGTGCCATGTCACACCTGCAGCTGGACGAGTAC
GGAAGACTTCCATTCGATAGCTTCAAGATCATGAACAAGGATTTCCCTCA
AGTGCTTTATCCTGTCTTTAGGCTTCAGCAATCAACACAGCGCGCTGTCC
TGGGCAATTCGTGGTGGAAGAAAAAGGTAAACGAGCTTGACTATTGGCGA
GAAAATAGGGAGCACGTCGAGAAGATGGAAAAGTTGAAGGGAGAGAAAAA
GAAGGAACGACAGCGAGATGCACAGATAAGAAAAGGT
back to top