mRNA_P-littoralis_Contig110.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig110.62.1
Unique NamemRNA_P-littoralis_Contig110.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: D8LMG4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG4_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 3.100e-59
Identity = 103/150 (68.67%), Postives = 115/150 (76.67%), Query Frame = 1
Query:    1 GSGRKMERNDEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQDDDL-TGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
            G GRK    DEEDD V FVGSP      AE KS+GQ L+L+TNL R S SRE QD     G +RQ   VT+VFDLPDGSQ DQEFQLGQTVE LKSF+ES+FGIPMS Q++YLGSVLMMDPM+LLDYPE DG G VLIVVEG+M+E TKK
Sbjct:   14 GRGRKT---DEEDDVVAFVGSPRFTR-NAEMKSSGQGLYLDTNLVRGSVSREVQDVHADNGFQRQVAVVTVVFDLPDGSQADQEFQLGQTVEVLKSFVESEFGIPMSCQELYLGSVLMMDPMTLLDYPEVDGAGNVLIVVEGEMNEDTKK 159          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A7S2RY85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY85_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.350e-28
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   82 KAESKSNGQVLFLNTNLARMSFSRET---QDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVL--MMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
            KAE +   ++  L  +L+  S S+ +   Q++DL  L+R T PV +VFDLPDGSQV+ +FQ+GQT+E LKSF+ S+ GIPM GQD++L  +   +MDP++LLDY + D   EVL+ VEG M    KK
Sbjct:   10 KAEFEPGRKLTGLGLDLSLASASKGSPRLQEEDLV-LQRATEPVIVVFDLPDGSQVEHKFQMGQTIEVLKSFVASECGIPMGGQDLFLEGLQQPLMDPLTLLDYSQIDPASEVLVRVEGTMHMSAKK 135          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A7S2HLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLV2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.200e-23
Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   28 DEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQDDDLTGLE---RQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYL--GSVLMMDPMSLLDYPEFDGIGEVLIVVEG 423
            D +DD + F   P         K N +++ L  +L +     +   D     +   R  T  TI+F+LPDGS V  EFQ+GQTV+ LKS+I S+ GIPM+ Q +YL   + +++DPM+LLDYPE D + E+LI VEG
Sbjct:   25 DGDDDDMAFAIIPDATPEGLPRKVNPRLIGLGLDLTQAKQPNDQGSDQTREAQIERRNNTVATILFELPDGSMVQNEFQMGQTVQVLKSYIASEVGIPMAQQSLYLETSTDMLLDPMTLLDYPEIDPMDEILIRVEG 161          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A7S2D6F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6F3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.820e-23
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  163 DDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYL----GSVLMMDPMSLLDYPEFDGIGEVLIVVEGDM 429
            ++DL  +E  TTPV +VFDLPDGS V+ EF +GQ+VE LKS+I S+ GI M  Q ++L    GSVL+MDPMSL DYP+     E +I VEG+M
Sbjct:   21 EEDLIEMEA-TTPVLVVFDLPDGSSVESEFAIGQSVEVLKSYIASECGIQMGDQQLFLEAADGSVLLMDPMSLSDYPQISAGSENIIRVEGEM 112          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A8J2SIH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIH4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.990e-20
Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   22 RNDEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRE-TQDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
            R D  DD +  + SP L +  AE K     + +  +LA+   + E T++DD+  ++R   PV +VF+LPDGS+ ++ F+LGQTVE LK+F+E +F I MS   +YLG   M DP SL D+P        ++ V G++ E+ +K
Sbjct:    7 RVDSRDDLLATI-SPKLISPGAEPKPRSIGIDM-ASLAKSERNAENTEEDDI--IKRLDAPVLVVFELPDGSEGEKTFKLGQTVEVLKAFVEDEFEIDMSASRLYLGDEEMPDPFSLSDFPSVSPRKACVVRVAGEVPERAQK 145          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: F0YBA1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA1_AURAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.950e-19
Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 1
Query:   34 EDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQDDDLTGLERQT-TPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
            +DD VT VGS    A  AE K+   +  L+ +    S        +   +ER     V +VF+LPDGS+ ++ F++G TVE LKSF+E +F IPM  Q +YL   LM+DP+SL DYP  D   +  + V G++ E+ +K
Sbjct:   22 DDDYVTAVGSALPSA--AEPKAALGLRGLDISAVVKSERNPRPCAEHERVERALDAQVLVVFELPDGSEGEKHFKMGHTVEVLKSFVEEEFEIPMGVQSLYLDETLMLDPLSLSDYPAIDPARDCFVRVGGEIPEQAQK 158          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A482RPU6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPU6_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.420e-15
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  202 VTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSV--LMMDPMSLLDYPEFDG 393
            + +VFDLPDGSQ +  F+LGQ+VE LKSF+ES++GIPM+ Q M+L S    M++P+SLLDY E  G
Sbjct:   77 INVVFDLPDGSQGEGNFKLGQSVEVLKSFVESEYGIPMATQRMFLNSSEKQMLNPLSLLDYAEVKG 142          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A485K463_9STRA (Aste57867_941 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K463_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.250e-14
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  190 QTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVE 420
            Q   ++I F+LPD S+  Q+F+ GQTV  LKS++ ++F +PM+   + LG V+++DP SL DYPE +    V IVV+
Sbjct:   26 QEEEISITFELPDESEAQQQFKKGQTVAVLKSYLSTEFDLPMTSIKLMLGDVVLVDPYSLTDYPEMERFDAVRIVVK 102          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A024TXM3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXM3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.910e-13
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  154 ETQDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVV 417
            ET++DD   L+ +   +T  F+LPD S+  Q+F+ GQTV  LKSF+E++F + M    +    V+++DP SL DYP+F+   E  +VV
Sbjct:   16 ETKEDDARRLQEEDIEIT--FELPDQSEARQKFKKGQTVMVLKSFLETEFDLHMPSIRLVHNDVVLLDPYSLTDYPDFEHNDEARVVV 101          
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A067BY88_SAPPC (Ubiquitin-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY88_SAPPC)

HSP 1 Score: 68.2 bits (165), Expect = 4.570e-12
Identity = 34/105 (32.38%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  106 QVLFLNTNLARMSFSRETQDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVE 420
            + L L     R +   E++ DD   L+ +   + IVF+LPDGS+V ++F+ GQT+  LKS++  +F +PM    +      ++DP ++ DYPE + +  V + V+
Sbjct:    2 EKLQLAIPTTREAPDEESKVDDARRLQEED--IVIVFELPDGSEVQEKFKKGQTIAVLKSYLSMEFDLPMESLKLLHHETTLIDPYTITDYPELEALDHVRLRVK 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LMG4_ECTSI3.100e-5968.67Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A7S2RY85_9STRA1.350e-2848.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2HLV2_9STRA3.200e-2340.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2D6F3_9STRA5.820e-2354.84Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8J2SIH4_9STRA4.990e-2038.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YBA1_AURAN1.950e-1938.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482RPU6_9ARCH1.420e-1557.58Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485K463_9STRA1.250e-1444.16Aste57867_941 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A024TXM3_9STRA3.910e-1340.91Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A067BY88_SAPPC4.570e-1232.38Ubiquitin-like domain-containing protein n=2 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig110contigP-littoralis_Contig110:298675..301020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMG4
Model size450
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.19e-59
EggNOG OGs2D08N@1|root,2SD77@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-05_002660.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789434.00378-CDS-P-littoralis_Contig110:298674..2988001680789434.00378-CDS-P-littoralis_Contig110:298674..298800Pylaiella littoralis U1_48CDSP-littoralis_Contig110 298675..298800 -
1680789434.0177426-CDS-P-littoralis_Contig110:298979..2990541680789434.0177426-CDS-P-littoralis_Contig110:298979..299054Pylaiella littoralis U1_48CDSP-littoralis_Contig110 298980..299054 -
1680789434.026766-CDS-P-littoralis_Contig110:299316..2993581680789434.026766-CDS-P-littoralis_Contig110:299316..299358Pylaiella littoralis U1_48CDSP-littoralis_Contig110 299317..299358 -
1680789434.034564-CDS-P-littoralis_Contig110:300813..3010051680789434.034564-CDS-P-littoralis_Contig110:300813..301005Pylaiella littoralis U1_48CDSP-littoralis_Contig110 300814..301005 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789434.042677-UTR-P-littoralis_Contig110:301005..3010201680789434.042677-UTR-P-littoralis_Contig110:301005..301020Pylaiella littoralis U1_48UTRP-littoralis_Contig110 301006..301020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig110.62.1prot_P-littoralis_Contig110.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig110 298675..301005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig110.62.1

>prot_P-littoralis_Contig110.62.1 ID=prot_P-littoralis_Contig110.62.1|Name=mRNA_P-littoralis_Contig110.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MERNDEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQD
DDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPM
SGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK*
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mRNA from alignment at P-littoralis_Contig110:298675..301020-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig110.62.1 ID=mRNA_P-littoralis_Contig110.62.1|Name=mRNA_P-littoralis_Contig110.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2346bp|location=Sequence derived from alignment at P-littoralis_Contig110:298675..301020- (Pylaiella littoralis U1_48)
GGGAGCGGCCGGAAGATGGAGAGAAACGACGAAGAAGACGATGCTGTTAC CTTTGTCGGGTCGCCATCTCTTGATGCCTGCAAGGCAGAATCGAAATCGA ATGGCCAAGTTCTCTTCTTGAATACAAATCTGGCGAGAATGAGTTTTTCG CGAGAAACTCAGGATGACGACCTTACTGGACTTGAGAGACAAACGACCCC CGTGACGGTGTGTGTTGCCGTTTTTCACATTACCTATCTACCTGCAGAGA TTCCTAGCCCGTGGTCACGAAAGTGCTGAGCCCTAGGAAGAATTGAAAAA AACAAAAAAAATGAAATGGAAGGTAAATTGTACAAATCGCCGAAAAAGGT ACGCCTTACAACTCCTCCTAGTTGGTGTGCAACACAGAGGCCTCTAAACT ACCACTCACTACAGGTCTCCATTCGACTACAACGGTACTGAATAGCAGCC CACCTTCAGTACTAACTCTGTTGCTGTCTGGAGTGCTGCCTGCAACGTAC AATAGGCCCAACACTCGGAAAAGCAGAATAATACAGAAGTAAGTGCGTGT GTATGTTTGTGTGGGTGTTTGTTTCATCCCATTTATTCTGTGCACCAGTC TACACCTTTCGGTATGAAGTGGGTGCACCAGCCGGGGTGAGCACGGCGTG ACGACGTATTACTAGTAACGGTAATGGGAGGTGCGTGTGATGCCAAGCAT CAACGGGAAAGTTCAATTATTATAATTGCGATCATGAATATTTTAGGAAG TTTATTATTTCATCAAGACTTCCTACAACACACACACCGCCGCCACTATC TCGCCACAGCCAAAGCTTACGCCAATCAAGCTTCCGGTTGCCGACTTGAA AACATAGGCGCACACGCTCCAACAGGTTTTGTTGCCATTGGTGTCCCAGG GGTTGAGGTCTGGTTGGTGCTTGCTGTCGCATGGTGTGCCCATCAGGGTC CTTTGGAGGGGGGGGGGGGGGGGTGGGGGGGTTCTCTGGTTTAATTTGAG CACAGGGGTCGGAAAGTCACACAATTATACGTGGACCGCAAGAAACGGCC TGAAACTCTTTCAGGCAATAATCGAAACAATTATCGGGAAATAAATGTGG AGAATGTGACTATGAACGATTGACGGGGTGAATGCAATCGAGTTAGATAT CGAATTGACCCTACGCGGGAATGCTTTTTTTTGAGTCGCTCTTTGTGGCC GGCTCGGCGCATTACTCCCCGAGAAACGTGTCAGTCGAAGCATTTGTATG TCAGGCAAACCAATTAATCTCGTGTCTCACTCTCGATCTGATTCATCACT CTGAATCTCGCGAAAACTGAATTGGTTTGTTTGCTACAATTTTTGTCATT ATTTTTTTAAATTACCATCACCGCTAGTATTGCTGTCTTTATTTGTATCC CTCCAGCGAAAATCTCCTACACTTTTCACGCGCGCTAGCCTGTGGTGATC TTACCCGCGTAGTGCAACGTCACCCCCATATCTCGACTTCAATCCTTCTC AGCCGATTTGCAAATGGTTGACTGAAACATTTTTATGCTCATTGTCAGAA TGTACATGACCTGTGGCGACAGATAGGGAATTTTTTATGTTAATGCAATG ACCTCTTCACCCTTTCATCACCACCACCGCCGTGCTGCACTTCAAACCTA CCTTCGGTGCAGATTGTTTTTGATCTTCCGGACGGCAGTCAAGTAGACCA GGAGGTGAGCTGTGGTACTATTGCTTGACCTGTGTACAACGTTTATTTGA CAGGGCCGATGAAGGGCTATTTACTATTATAAGGCCAACGCGATTGATGG ACTTGTCCCTAAACGGTATCACATGTGTGGGCGGAGACAAGGAGCTGCGA AGCTTGTCCGTCATCAAACCGTGAGCGAAGGCCGAGGAGTACGCGCGCTT AATATTTTTCGTCATTTCATGGCGCTTGTTTGATATGCCACACGTTCTTC TGACCTTGCGCCAAAGTTTCAGCTGGGGCAAACTGTGGAAGCACTCAAGA GCTTCATCGAGTCGGACTTTGGCATACCCATGTCTGGTCAGGTATGTCCG ACAAACTTATCCGGTGCCAATTTCGGTGTAAAGCAGTTGAGCCTGTCGAA GTATGACACACATTGGTAATGCTTCCTGCTCGCATATCGGATGAAATACC CTTGCAACCCTATCACAACGCCGATCGTGATTTTTGACCCAAATGCGCTG TCGTGTTCGCGTTTCTCCAGGATATGTACCTGGGATCGGTATTGATGATG GATCCGATGTCCCTGCTGGACTATCCGGAGTTTGATGGCATAGGCGAAGT ATTGATAGTAGTGGAAGGGGATATGAGTGAGAAAACGAAAAAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig110:298675..301020-

>mRNA_P-littoralis_Contig110.62.1 ID=mRNA_P-littoralis_Contig110.62.1|Name=mRNA_P-littoralis_Contig110.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig110:298675..301020- (Pylaiella littoralis U1_48)
ATGGAGAGAAACGACGAAGAAGACGATGCTGTTACCTTTGTCGGGTCGCC
ATCTCTTGATGCCTGCAAGGCAGAATCGAAATCGAATGGCCAAGTTCTCT
TCTTGAATACAAATCTGGCGAGAATGAGTTTTTCGCGAGAAACTCAGGAT
GACGACCTTACTGGACTTGAGAGACAAACGACCCCCGTGACGATTGTTTT
TGATCTTCCGGACGGCAGTCAAGTAGACCAGGAGTTTCAGCTGGGGCAAA
CTGTGGAAGCACTCAAGAGCTTCATCGAGTCGGACTTTGGCATACCCATG
TCTGGTCAGGATATGTACCTGGGATCGGTATTGATGATGGATCCGATGTC
CCTGCTGGACTATCCGGAGTTTGATGGCATAGGCGAAGTATTGATAGTAG
TGGAAGGGGATATGAGTGAGAAAACGAAAAAGTAG
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