mRNA_P-littoralis_Contig110.62.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: D8LMG4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG4_ECTSI) HSP 1 Score: 189 bits (481), Expect = 3.100e-59 Identity = 103/150 (68.67%), Postives = 115/150 (76.67%), Query Frame = 1
Query: 1 GSGRKMERNDEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQDDDL-TGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
G GRK DEEDD V FVGSP AE KS+GQ L+L+TNL R S SRE QD G +RQ VT+VFDLPDGSQ DQEFQLGQTVE LKSF+ES+FGIPMS Q++YLGSVLMMDPM+LLDYPE DG G VLIVVEG+M+E TKK
Sbjct: 14 GRGRKT---DEEDDVVAFVGSPRFTR-NAEMKSSGQGLYLDTNLVRGSVSREVQDVHADNGFQRQVAVVTVVFDLPDGSQADQEFQLGQTVEVLKSFVESEFGIPMSCQELYLGSVLMMDPMTLLDYPEVDGAGNVLIVVEGEMNEDTKK 159
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A7S2RY85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY85_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.350e-28 Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 1
Query: 82 KAESKSNGQVLFLNTNLARMSFSRET---QDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVL--MMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
KAE + ++ L +L+ S S+ + Q++DL L+R T PV +VFDLPDGSQV+ +FQ+GQT+E LKSF+ S+ GIPM GQD++L + +MDP++LLDY + D EVL+ VEG M KK
Sbjct: 10 KAEFEPGRKLTGLGLDLSLASASKGSPRLQEEDLV-LQRATEPVIVVFDLPDGSQVEHKFQMGQTIEVLKSFVASECGIPMGGQDLFLEGLQQPLMDPLTLLDYSQIDPASEVLVRVEGTMHMSAKK 135
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A7S2HLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLV2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.200e-23 Identity = 56/137 (40.88%), Postives = 80/137 (58.39%), Query Frame = 1
Query: 28 DEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQDDDLTGLE---RQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYL--GSVLMMDPMSLLDYPEFDGIGEVLIVVEG 423
D +DD + F P K N +++ L +L + + D + R T TI+F+LPDGS V EFQ+GQTV+ LKS+I S+ GIPM+ Q +YL + +++DPM+LLDYPE D + E+LI VEG
Sbjct: 25 DGDDDDMAFAIIPDATPEGLPRKVNPRLIGLGLDLTQAKQPNDQGSDQTREAQIERRNNTVATILFELPDGSMVQNEFQMGQTVQVLKSYIASEVGIPMAQQSLYLETSTDMLLDPMTLLDYPEIDPMDEILIRVEG 161
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A7S2D6F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6F3_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 5.820e-23 Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 163 DDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYL----GSVLMMDPMSLLDYPEFDGIGEVLIVVEGDM 429
++DL +E TTPV +VFDLPDGS V+ EF +GQ+VE LKS+I S+ GI M Q ++L GSVL+MDPMSL DYP+ E +I VEG+M
Sbjct: 21 EEDLIEMEA-TTPVLVVFDLPDGSSVESEFAIGQSVEVLKSYIASECGIQMGDQQLFLEAADGSVLLMDPMSLSDYPQISAGSENIIRVEGEM 112
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A8J2SIH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIH4_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.990e-20 Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 1
Query: 22 RNDEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRE-TQDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
R D DD + + SP L + AE K + + +LA+ + E T++DD+ ++R PV +VF+LPDGS+ ++ F+LGQTVE LK+F+E +F I MS +YLG M DP SL D+P ++ V G++ E+ +K
Sbjct: 7 RVDSRDDLLATI-SPKLISPGAEPKPRSIGIDM-ASLAKSERNAENTEEDDI--IKRLDAPVLVVFELPDGSEGEKTFKLGQTVEVLKAFVEDEFEIDMSASRLYLGDEEMPDPFSLSDFPSVSPRKACVVRVAGEVPERAQK 145
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: F0YBA1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA1_AURAN) HSP 1 Score: 88.6 bits (218), Expect = 1.950e-19 Identity = 54/139 (38.85%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 34 EDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQDDDLTGLERQT-TPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVEGDMSEKTKK 447
+DD VT VGS A AE K+ + L+ + S + +ER V +VF+LPDGS+ ++ F++G TVE LKSF+E +F IPM Q +YL LM+DP+SL DYP D + + V G++ E+ +K
Sbjct: 22 DDDYVTAVGSALPSA--AEPKAALGLRGLDISAVVKSERNPRPCAEHERVERALDAQVLVVFELPDGSEGEKHFKMGHTVEVLKSFVEEEFEIPMGVQSLYLDETLMLDPLSLSDYPAIDPARDCFVRVGGEIPEQAQK 158
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A482RPU6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPU6_9ARCH) HSP 1 Score: 78.2 bits (191), Expect = 1.420e-15 Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1
Query: 202 VTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSV--LMMDPMSLLDYPEFDG 393
+ +VFDLPDGSQ + F+LGQ+VE LKSF+ES++GIPM+ Q M+L S M++P+SLLDY E G
Sbjct: 77 INVVFDLPDGSQGEGNFKLGQSVEVLKSFVESEYGIPMATQRMFLNSSEKQMLNPLSLLDYAEVKG 142
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A485K463_9STRA (Aste57867_941 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K463_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.250e-14 Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 190 QTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVE 420
Q ++I F+LPD S+ Q+F+ GQTV LKS++ ++F +PM+ + LG V+++DP SL DYPE + V IVV+
Sbjct: 26 QEEEISITFELPDESEAQQQFKKGQTVAVLKSYLSTEFDLPMTSIKLMLGDVVLVDPYSLTDYPEMERFDAVRIVVK 102
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A024TXM3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXM3_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 3.910e-13 Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 1
Query: 154 ETQDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVV 417
ET++DD L+ + +T F+LPD S+ Q+F+ GQTV LKSF+E++F + M + V+++DP SL DYP+F+ E +VV
Sbjct: 16 ETKEDDARRLQEEDIEIT--FELPDQSEARQKFKKGQTVMVLKSFLETEFDLHMPSIRLVHNDVVLLDPYSLTDYPDFEHNDEARVVV 101
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Match: A0A067BY88_SAPPC (Ubiquitin-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BY88_SAPPC) HSP 1 Score: 68.2 bits (165), Expect = 4.570e-12 Identity = 34/105 (32.38%), Postives = 60/105 (57.14%), Query Frame = 1
Query: 106 QVLFLNTNLARMSFSRETQDDDLTGLERQTTPVTIVFDLPDGSQVDQEFQLGQTVEALKSFIESDFGIPMSGQDMYLGSVLMMDPMSLLDYPEFDGIGEVLIVVE 420
+ L L R + E++ DD L+ + + IVF+LPDGS+V ++F+ GQT+ LKS++ +F +PM + ++DP ++ DYPE + + V + V+
Sbjct: 2 EKLQLAIPTTREAPDEESKVDDARRLQEED--IVIVFELPDGSEVQEKFKKGQTIAVLKSYLSMEFDLPMESLKLLHHETTLIDPYTITDYPELEALDHVRLRVK 104 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig110.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig110.62.1 >prot_P-littoralis_Contig110.62.1 ID=prot_P-littoralis_Contig110.62.1|Name=mRNA_P-littoralis_Contig110.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp MERNDEEDDAVTFVGSPSLDACKAESKSNGQVLFLNTNLARMSFSRETQDback to top mRNA from alignment at P-littoralis_Contig110:298675..301020- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig110.62.1 ID=mRNA_P-littoralis_Contig110.62.1|Name=mRNA_P-littoralis_Contig110.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2346bp|location=Sequence derived from alignment at P-littoralis_Contig110:298675..301020- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig110:298675..301020- >mRNA_P-littoralis_Contig110.62.1 ID=mRNA_P-littoralis_Contig110.62.1|Name=mRNA_P-littoralis_Contig110.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig110:298675..301020- (Pylaiella littoralis U1_48)back to top |