mRNA_P-littoralis_Contig11.192.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.192.1
Unique NamemRNA_P-littoralis_Contig11.192.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 2.580e-34
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 2
Query:    2 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            KWR LIEP+KYP++E D+ FS RLESVRKDVECFFGILK RFRILKLAMTYQKQERLDYVFFTCCILHN
Sbjct:  305 KWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHN 373          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 4.040e-32
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 2
Query:    2 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            KW+ LIEP+KYP++E+D+ FS RLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTCCILHN
Sbjct:  181 KWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHN 249          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.350e-32
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 2
Query:    5 WRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            W+ LIEP+KYP++E D+ F  RLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTCCILHN
Sbjct:   18 WQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHN 85          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.800e-30
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   17 IEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            +EPTKYP++E DI FS RLESVRKDVECFFGILK RFRILKL M Y +QER+D VFFTCCILHN
Sbjct:    1 MEPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHN 64          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 9.120e-30
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    2 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            KW+ LIEP+KYP++E D+ FS RLESVRKDVECFFGILK R RIL LAM +Q QER+D VFFTCCILHN
Sbjct:  136 KWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHN 204          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5L8U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.280e-29
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 2
Query:   17 IEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            +EPT+YP++E+DI FS RLESVRKDVECFFGILK RFRILKLAM Y +QER+D VFFTCCILHN
Sbjct:    1 MEPTEYPLSEKDILFSKRLESVRKDVECFFGILKGRFRILKLAMAYPEQERIDNVFFTCCILHN 64          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.330e-29
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            KW+ LIEP+KYP++E D+ FS RLESVRKDVECFFGILK RFRILKLAM YQ QER+D VFFTC ILHN
Sbjct:  291 KWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHN 359          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 6.820e-29
Identity = 52/69 (75.36%), Postives = 59/69 (85.51%), Query Frame = 2
Query:    2 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            KW+ L+EPTKYP++E DI FS RLESVRKDVECFFGILK  FRI K+AM Y +QER+D VFFTCCILHN
Sbjct:  276 KWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHN 344          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.410e-28
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    2 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            KW TLI P+KYPI + D+ FS RLESVRKDVECFFGI+K  FRILKL++ Y KQE +D VFFTCCILHN
Sbjct:   93 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHN 161          
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.790e-27
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    2 KWRTLIEPTKYPITEEDIRFSGRLESVRKDVECFFGILKARFRILKLAMTYQKQERLDYVFFTCCILHN 208
            KW TLI P+KYPI + D+ FS RLESVRKDVECFFGI+K RFRILKL++ Y KQE +D VFFTCCILHN
Sbjct:  334 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHN 402          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE2.580e-3486.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE4.040e-3279.71DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZL5_9PHAE7.350e-3277.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXJ4_9PHAE2.800e-3079.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI9.120e-3075.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8U1_9PHAE1.280e-2979.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE2.330e-2978.26DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE6.820e-2975.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE5.410e-2872.46DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE1.790e-2773.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:1000098..1000307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789431.3190432-CDS-P-littoralis_Contig11:1000097..10003071680789431.3190432-CDS-P-littoralis_Contig11:1000097..1000307Pylaiella littoralis U1_48CDSP-littoralis_Contig11 1000098..1000307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.192.1prot_P-littoralis_Contig11.192.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 1000098..1000307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.192.1

>prot_P-littoralis_Contig11.192.1 ID=prot_P-littoralis_Contig11.192.1|Name=mRNA_P-littoralis_Contig11.192.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
QVAYVDRAHQIPDNRGRHSVLGEVGERAEGCGVLFRYPEGPLQNTQARHD
LPEAGAPGLRVLHVLHPAQ*
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mRNA from alignment at P-littoralis_Contig11:1000098..1000307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.192.1 ID=mRNA_P-littoralis_Contig11.192.1|Name=mRNA_P-littoralis_Contig11.192.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig11:1000098..1000307+ (Pylaiella littoralis U1_48)
CAAGTGGCGTACGTTGATCGAGCCCACCAAATACCCGATAACCGAGGAAG ACATTCGGTTCTCGGGGAGGTTGGAGAGCGTGCGGAAGGATGTGGAGTGC TTTTTCGGTATCCTGAAGGCCCGCTTCAGAATACTCAAGCTCGCCATGAC CTACCAGAAGCAGGAGCGCCTGGACTACGTGTTCTTCACGTGCTGCATCC TGCACAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:1000098..1000307+

>mRNA_P-littoralis_Contig11.192.1 ID=mRNA_P-littoralis_Contig11.192.1|Name=mRNA_P-littoralis_Contig11.192.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig11:1000098..1000307+ (Pylaiella littoralis U1_48)
CAAGTGGCGTACGTTGATCGAGCCCACCAAATACCCGATAACCGAGGAAG
ACATTCGGTTCTCGGGGAGGTTGGAGAGCGTGCGGAAGGATGTGGAGTGC
TTTTTCGGTATCCTGAAGGCCCGCTTCAGAATACTCAAGCTCGCCATGAC
CTACCAGAAGCAGGAGCGCCTGGACTACGTGTTCTTCACGTGCTGCATCC
TGCACAATAA
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