mRNA_P-littoralis_Contig11.191.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.191.1
Unique NamemRNA_P-littoralis_Contig11.191.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.260e-70
Identity = 104/123 (84.55%), Postives = 113/123 (91.87%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            IL RGN FGSIY LSWMS+  VQK FH+FC+HFATEMYD+HI+LPS+ NGELD+VMG+YEKLGFPGAMGSTDVTHI WSRCPYNQ RSYTGKEGKPTVGYQVTV+H GRVLAVTEGFTGSTND
Sbjct:  134 ILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTND 256          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 4.270e-63
Identity = 94/123 (76.42%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            IL RGNCF SIY +SWMS+  VQ  FHKFCKHFA EMYD+HIYLPS+ NGELD VM +Y++LGF GAMGS DVTHI WS+CPYN ARSYTGKEG PTVGYQVTV+H GR +AVTEGFT STND
Sbjct:  105 ILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTND 227          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 2.040e-61
Identity = 91/123 (73.98%), Postives = 102/123 (82.93%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            IL RGNCF SIY +SWMS+  VQ  FH FCKHFA EMYD+HIYLPS+ NGELD VM +Y++LGF GAMGS DVTHI W++CPYN  RSYTGKEG PT+GYQVTV+H GR  AVTEGFTGSTND
Sbjct:  132 ILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTND 254          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.760e-60
Identity = 90/123 (73.17%), Postives = 105/123 (85.37%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            IL RGNCF SIY +SWMS+  VQ  FHKFC+HFA EMYD+ I+LP++ +G+LD VM +Y++LGF GA+GS DVTHIAWSRCPYNQARSYTGKEG PT+ YQVTVDH GR +AVTEGFTGSTND
Sbjct:   92 ILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTND 214          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 4.720e-57
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGR 327
            IL RGNCF SIY +SWMS+  VQ  FHKFCKHFA EMYD+HIYLPS+ NGELD VM +Y++LGF GAMGS DVTHI WS+CPYN ARSYTGKEG PTVGYQVTV+H GR
Sbjct:  132 ILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGR 240          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.060e-51
Identity = 81/123 (65.85%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            IL+RGN F  IY +S++S   V  TFH+FCK+FA E+YD+++YLP+    +L KVM +Y+++GFPGA+GSTDVTHI W  CPYNQAR YTGKEGKPTV +QVTVDH+GRVLAVT GFTG+TND
Sbjct:   90 ILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT--GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATND 210          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 6.960e-51
Identity = 81/123 (65.85%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            IL+RGN F  IY +S++S   V  TFH+FCK+FA E+YD+++YLP+    +L KVM +Y+++GFPGA+GSTDVTHI W  CPYNQAR YTGKEGKPTV +QVTVDH+GRVLAVT GFTG+TND
Sbjct:  181 ILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT--GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATND 301          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.630e-48
Identity = 82/123 (66.67%), Postives = 95/123 (77.24%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            ILARGNCF  IY +S++S      TFH+F ++FA EMY +HI+LP+    +  KVM +Y++LGF GA GSTDVTHI W  CPYNQARSYTGKEG PTV YQVTVDHT RVLAVT GFTGSTND
Sbjct:  165 ILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTND 285          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.580e-48
Identity = 76/123 (61.79%), Postives = 90/123 (73.17%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            IL RGNCF  I  LS MS  +   TFHKFCKHFA E++++HIYLP+      D+VM  Y+KLG  GA+GSTDVTHI W  CP+   RSYTGKEG PT+ YQVTVDH GR +A+T GFTG+TND
Sbjct:   10 ILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPT--GSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATND 130          
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.050e-46
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 1
Query:    1 ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNGELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGYQVTVDHTGRVLAVTEGFTGSTND 369
            +L +GNCF  +  LS MS ++ Q TFHKFC+HFA EM+D+HIYLP+     LD+VMG + +LG+ GA GSTDVTHI W+ CP+   RS+TGKEG PT+ Y VTVDH GR LAVT GFTG+TND
Sbjct:   43 VLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPT--GTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATND 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE1.260e-7084.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE4.270e-6376.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI2.040e-6173.98Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5KNX4_9PHAE1.760e-6073.17DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L642_9PHAE4.720e-5776.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE1.060e-5165.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE6.960e-5165.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE4.630e-4866.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE7.580e-4861.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE1.050e-4660.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:999446..999815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size372
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.3e-43
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789431.2431717-CDS-P-littoralis_Contig11:999445..9998141680789431.2431717-CDS-P-littoralis_Contig11:999445..999814Pylaiella littoralis U1_48CDSP-littoralis_Contig11 999446..999814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.191.1prot_P-littoralis_Contig11.191.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 999446..999814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.191.1

>prot_P-littoralis_Contig11.191.1 ID=prot_P-littoralis_Contig11.191.1|Name=mRNA_P-littoralis_Contig11.191.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
ILARGNCFGSIYMLSWMSSTVVQKTFHKFCKHFATEMYDDHIYLPSDGNG
ELDKVMGEYEKLGFPGAMGSTDVTHIAWSRCPYNQARSYTGKEGKPTVGY
QVTVDHTGRVLAVTEGFTGSTND
back to top

mRNA from alignment at P-littoralis_Contig11:999446..999815+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.191.1 ID=mRNA_P-littoralis_Contig11.191.1|Name=mRNA_P-littoralis_Contig11.191.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=370bp|location=Sequence derived from alignment at P-littoralis_Contig11:999446..999815+ (Pylaiella littoralis U1_48)
ATACTGGCCAGGGGAAACTGTTTCGGAAGCATCTACATGCTTTCATGGAT GAGCAGCACCGTAGTGCAGAAGACTTTCCACAAATTTTGCAAGCACTTCG CGACGGAGATGTACGACGACCACATCTACCTCCCGTCGGACGGAAACGGC GAGCTTGATAAAGTCATGGGAGAGTACGAGAAGCTGGGGTTTCCGGGCGC GATGGGTTCCACTGATGTTACCCACATCGCGTGGAGTAGATGCCCCTACA ACCAAGCCCGTTCGTACACCGGCAAGGAAGGCAAGCCCACGGTCGGGTAC CAGGTGACGGTCGACCACACTGGGCGCGTGTTGGCTGTTACAGAGGGATT CACCGGGTCCACCAACGACA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig11:999446..999815+

>mRNA_P-littoralis_Contig11.191.1 ID=mRNA_P-littoralis_Contig11.191.1|Name=mRNA_P-littoralis_Contig11.191.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig11:999446..999815+ (Pylaiella littoralis U1_48)
ATACTGGCCAGGGGAAACTGTTTCGGAAGCATCTACATGCTTTCATGGAT
GAGCAGCACCGTAGTGCAGAAGACTTTCCACAAATTTTGCAAGCACTTCG
CGACGGAGATGTACGACGACCACATCTACCTCCCGTCGGACGGAAACGGC
GAGCTTGATAAAGTCATGGGAGAGTACGAGAAGCTGGGGTTTCCGGGCGC
GATGGGTTCCACTGATGTTACCCACATCGCGTGGAGTAGATGCCCCTACA
ACCAAGCCCGTTCGTACACCGGCAAGGAAGGCAAGCCCACGGTCGGGTAC
CAGGTGACGGTCGACCACACTGGGCGCGTGTTGGCTGTTACAGAGGGATT
CACCGGGTCCACCAACGAC
back to top