mRNA_P-littoralis_Contig11.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.630e-27 Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLT------VIFCGDFNQL 273
VGGT +HSV Q G + G+LS NHD Q P+ D A+HWKG LA+EEVSMVGCEL+VALNKAA +FPMHK PFGNL ++ CG FNQL
Sbjct: 1479 VGGTTIHSVCQVGRKTFRGSLSRNHDDQSPMKDTQAIHWKGVNMLAVEEVSMVGCELLVALNKAACSMFPMHKDKPFGNLQPFGNLPLVLCGGFNQL 1575
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI) HSP 1 Score: 113 bits (282), Expect = 3.590e-27 Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
VGGT VHSV G R G GNLSG+HD Q L D AMHWKG LAIEEVSMVGC L+V L+KAA +FP+HK+ PFGN V+ GDF+QL
Sbjct: 1579 VGGTTVHSVCSTGSRDG-GNLSGDHDDQSSLPDAKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPIHKAKPFGNRVVVMLGDFHQL 1668
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE) HSP 1 Score: 106 bits (265), Expect = 7.070e-25 Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
VGGT +HSV GR GSG +HD QK L++ A+ W+G LA++E SMVGCE+ +AL+KAA ++FPMHK PFGN+ +FCGDFNQL
Sbjct: 1121 VGGTTIHSVCNVPGRKGSGGK--DHDDQKGLTEDQALSWEGKSVLAVKEASMVGCEMELALDKAACKVFPMHKDKPFGNMVAVFCGDFNQL 1209
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 6.280e-19 Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
VGGT VHSV G LSG H+ Q L A HWKG V LAIEE+SM+ C L+V L+ A +FP+HK PFGN V+ GDFNQL
Sbjct: 1815 VGGTTVHSVCPNTDDS-DGCLSGAHEGQSTLPASKAAHWKGDVVLAIEEISMISCNLLVRLHNTACSMFPLHKGQPFGNRVVVMLGDFNQL 1904
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.990e-15 Identity = 47/92 (51.09%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSS-PFGNLTVIFCGDFNQL 273
VGGT VHSV G G LSG H+ Q L A HW+ V LAIEE SM+ C L+V L+ A +FP+HK PFGN V+ GDFNQL
Sbjct: 366 VGGTTVHSVCPNTGDS-YGCLSGAHEGQSTLPASEAAHWQRDVILAIEESSMISCNLLVRLHNTACSMFPLHKGQQPFGNRVVVMLGDFNQL 456
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A8H5BTV0_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BTV0_9AGAR) HSP 1 Score: 50.4 bits (119), Expect = 4.040e-5 Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query: 79 SQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
S+K D +A+ W+G L I+EVSM+GC L++ ++ A + ++PFG + VIF GDF QL
Sbjct: 1335 SEKSKRDLIAL-WEGVDFLFIDEVSMIGCHLLLQISNAL--VDAKGNTAPFGGMNVIFAGDFAQL 1396
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A8H5BD74_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BD74_9AGAR) HSP 1 Score: 49.7 bits (117), Expect = 7.550e-5 Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 79 SQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
S K D +A+ W+G L ++EVSM+GC L++ ++ A + ++PFG L +IF GDF QL
Sbjct: 1364 SDKSKRDLIAL-WEGVDFLFVDEVSMIGCRLLLEISNAL--VDAKGNTAPFGGLNIIFAGDFAQL 1425 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig11.4.1 >prot_P-littoralis_Contig11.4.1 ID=prot_P-littoralis_Contig11.4.1|Name=mRNA_P-littoralis_Contig11.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVback to top mRNA from alignment at P-littoralis_Contig11:13266..13540+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig11.4.1 ID=mRNA_P-littoralis_Contig11.4.1|Name=mRNA_P-littoralis_Contig11.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=275bp|location=Sequence derived from alignment at P-littoralis_Contig11:13266..13540+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig11:13266..13540+ >mRNA_P-littoralis_Contig11.4.1 ID=mRNA_P-littoralis_Contig11.4.1|Name=mRNA_P-littoralis_Contig11.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig11:13266..13540+ (Pylaiella littoralis U1_48)back to top |