mRNA_P-littoralis_Contig11.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig11.4.1
Unique NamemRNA_P-littoralis_Contig11.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.630e-27
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLT------VIFCGDFNQL 273
            VGGT +HSV Q G +   G+LS NHD Q P+ D  A+HWKG   LA+EEVSMVGCEL+VALNKAA  +FPMHK  PFGNL       ++ CG FNQL
Sbjct: 1479 VGGTTIHSVCQVGRKTFRGSLSRNHDDQSPMKDTQAIHWKGVNMLAVEEVSMVGCELLVALNKAACSMFPMHKDKPFGNLQPFGNLPLVLCGGFNQL 1575          
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.590e-27
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
            VGGT VHSV   G R G GNLSG+HD Q  L D  AMHWKG   LAIEEVSMVGC L+V L+KAA  +FP+HK+ PFGN  V+  GDF+QL
Sbjct: 1579 VGGTTVHSVCSTGSRDG-GNLSGDHDDQSSLPDAKAMHWKGVSVLAIEEVSMVGCNLLVQLHKAACSMFPIHKAKPFGNRVVVMLGDFHQL 1668          
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 7.070e-25
Identity = 51/91 (56.04%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
            VGGT +HSV    GR GSG    +HD QK L++  A+ W+G   LA++E SMVGCE+ +AL+KAA ++FPMHK  PFGN+  +FCGDFNQL
Sbjct: 1121 VGGTTIHSVCNVPGRKGSGGK--DHDDQKGLTEDQALSWEGKSVLAVKEASMVGCEMELALDKAACKVFPMHKDKPFGNMVAVFCGDFNQL 1209          
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.280e-19
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
            VGGT VHSV         G LSG H+ Q  L    A HWKG V LAIEE+SM+ C L+V L+  A  +FP+HK  PFGN  V+  GDFNQL
Sbjct: 1815 VGGTTVHSVCPNTDDS-DGCLSGAHEGQSTLPASKAAHWKGDVVLAIEEISMISCNLLVRLHNTACSMFPLHKGQPFGNRVVVMLGDFNQL 1904          
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.990e-15
Identity = 47/92 (51.09%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    1 VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSS-PFGNLTVIFCGDFNQL 273
            VGGT VHSV    G    G LSG H+ Q  L    A HW+  V LAIEE SM+ C L+V L+  A  +FP+HK   PFGN  V+  GDFNQL
Sbjct:  366 VGGTTVHSVCPNTGDS-YGCLSGAHEGQSTLPASEAAHWQRDVILAIEESSMISCNLLVRLHNTACSMFPLHKGQQPFGNRVVVMLGDFNQL 456          
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A8H5BTV0_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BTV0_9AGAR)

HSP 1 Score: 50.4 bits (119), Expect = 4.040e-5
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   79 SQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
            S+K   D +A+ W+G   L I+EVSM+GC L++ ++ A   +     ++PFG + VIF GDF QL
Sbjct: 1335 SEKSKRDLIAL-WEGVDFLFIDEVSMIGCHLLLQISNAL--VDAKGNTAPFGGMNVIFAGDFAQL 1396          
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Match: A0A8H5BD74_9AGAR (ATP-dependent DNA helicase n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5BD74_9AGAR)

HSP 1 Score: 49.7 bits (117), Expect = 7.550e-5
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   79 SQKPLSDGMAMHWKGAVALAIEEVSMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL 273
            S K   D +A+ W+G   L ++EVSM+GC L++ ++ A   +     ++PFG L +IF GDF QL
Sbjct: 1364 SDKSKRDLIAL-WEGVDFLFVDEVSMIGCRLLLEISNAL--VDAKGNTAPFGGLNIIFAGDFAQL 1425          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig11.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JN07_9PHAE2.630e-2759.79ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G3U9_ECTSI3.590e-2763.74ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5K882_9PHAE7.070e-2556.04ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KIB1_9PHAE6.280e-1952.75ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KXW4_9PHAE1.990e-1551.09ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A8H5BTV0_9AGAR4.040e-541.54ATP-dependent DNA helicase n=1 Tax=Tulosesus angul... [more]
A0A8H5BD74_9AGAR7.550e-540.00ATP-dependent DNA helicase n=1 Tax=Tulosesus angul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig11contigP-littoralis_Contig11:13266..13540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3U9
PFAMsHelitron_like_N,PIF1
Model size275
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.89e-28
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size273
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789425.1201365-CDS-P-littoralis_Contig11:13265..135381680789425.1201365-CDS-P-littoralis_Contig11:13265..13538Pylaiella littoralis U1_48CDSP-littoralis_Contig11 13266..13538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig11.4.1prot_P-littoralis_Contig11.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig11 13266..13538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig11.4.1

>prot_P-littoralis_Contig11.4.1 ID=prot_P-littoralis_Contig11.4.1|Name=mRNA_P-littoralis_Contig11.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
VGGTAVHSVRQAGGRGGSGNLSGNHDSQKPLSDGMAMHWKGAVALAIEEV
SMVGCELMVALNKAAGEIFPMHKSSPFGNLTVIFCGDFNQL
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mRNA from alignment at P-littoralis_Contig11:13266..13540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig11.4.1 ID=mRNA_P-littoralis_Contig11.4.1|Name=mRNA_P-littoralis_Contig11.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=275bp|location=Sequence derived from alignment at P-littoralis_Contig11:13266..13540+ (Pylaiella littoralis U1_48)
GTCGGAGGGACAGCAGTGCACTCTGTCCGCCAAGCCGGGGGGAGAGGTGG CAGCGGCAATCTCTCTGGTAACCATGACAGCCAGAAGCCCCTATCTGATG GCATGGCAATGCACTGGAAAGGAGCTGTCGCTCTCGCCATCGAGGAAGTT AGCATGGTTGGATGCGAGTTAATGGTCGCACTCAACAAAGCAGCTGGCGA AATTTTCCCGATGCACAAGAGTTCGCCTTTCGGAAATCTCACGGTCATTT TCTGTGGTGACTTCAACCAGCTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig11:13266..13540+

>mRNA_P-littoralis_Contig11.4.1 ID=mRNA_P-littoralis_Contig11.4.1|Name=mRNA_P-littoralis_Contig11.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig11:13266..13540+ (Pylaiella littoralis U1_48)
GTCGGAGGGACAGCAGTGCACTCTGTCCGCCAAGCCGGGGGGAGAGGTGG
CAGCGGCAATCTCTCTGGTAACCATGACAGCCAGAAGCCCCTATCTGATG
GCATGGCAATGCACTGGAAAGGAGCTGTCGCTCTCGCCATCGAGGAAGTT
AGCATGGTTGGATGCGAGTTAATGGTCGCACTCAACAAAGCAGCTGGCGA
AATTTTCCCGATGCACAAGAGTTCGCCTTTCGGAAATCTCACGGTCATTT
TCTGTGGTGACTTCAACCAGCTC
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