mRNA_P-littoralis_Contig1.310.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.310.1
Unique NamemRNA_P-littoralis_Contig1.310.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: W4FAY9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FAY9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 5.990e-61
Identity = 119/281 (42.35%), Postives = 166/281 (59.07%), Query Frame = 1
Query:    1 VPKRKNFNDSEKEAVIRHLLA-GSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCVEITKETYKTKLIDGVIPAIKEKWP 840
            V  + NF   ++  V  HLL   + +G L  G+ +    QF C W+T+ RLW++            ++A+ +KG +GRK +   +L ER+  IP  DRTT + +A  + VP STL    K   L  HS+++KP LT+  K  RL+W    +        ++H+  D++ VDEKWFY+    +  +L   EEPP R  +SKRFITKVMFL+AVARPR N  TN  F G+IG W FT+ VPA R+SRNR + T+VT    +T++TY+  LID VIPAIK KWP
Sbjct:    5 VATKPNFTPQQRTDVCHHLLTLVARDGKLPYGSFRNVAAQFACNWQTVARLWKRAAYNPGSNTLCQDVASRKKGRAGRK-LKYSDLSERIAKIPKTDRTTIQAIAHVINVPKSTLQDYFKRGFLVRHSSSVKPQLTEANKAARLKWAFERL----GPDLMVHDMMDYVHVDEKWFYMTRVKKTLYLLPGEEPPHRSTKSKRFITKVMFLSAVARPRWNYNTNEWFDGRIGTWHFTQSVPAQRSSRNRPSWTMVTVPCTVTRDTYRDMLIDNVIPAIKAKWP 280          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 3.150e-58
Identity = 102/136 (75.00%), Postives = 112/136 (82.35%), Query Frame = 1
Query:    1 VPKRKNFNDSEKEAVIRHLLAGSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTD 408
            V KRKNFN+SEKE VIRHLL GS NG L  GA KAA E+FGC W+T KRLWR+YD QH  GV+SP LAN R GNSGRKG+  +ELRERLRDIPLNDRTTQRRLAAALE+P +TL KNLKAL LR HSNA+KP LTD
Sbjct:   10 VAKRKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNAIKPYLTD 145          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: A0A6G0WUP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUP2_9STRA)

HSP 1 Score: 196 bits (497), Expect = 8.190e-56
Identity = 110/278 (39.57%), Postives = 168/278 (60.43%), Query Frame = 1
Query:   13 KNFNDSEKEAVIRHLLAGSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGI-DKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKAL-RLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCVEITKETYKTKLIDGVIPAIKEKWP 840
            KN +D E+ A    LL  S  G L RGA + A ++FGC   TI R+W++       G+A+ + ++  KGNSGRK       + E ++ +   +R T R LA    +P +T+ +++K   RL+  SN +KP LT++ K+ERL++ MS+ R +++GS    N   ++ VDEKW YL    ++F++YD E+  VR V+SK FITKVMFLAAVA+PR++      F GK+G+W F E VPA R  +NR   T+ T    +    Y+  +++ VIPAI++K+P
Sbjct:   23 KNLSDGERRADYEQLLEMSVEGELPRGAFQCAAQRFGCSRLTIARVWKRGRASIKEGLAAADTSSKIKGNSGRKCTRSSAAIEEAIKAVSHLNRQTLRTLAVKASIPKTTILRHMKQNPRLKARSNYVKPMLTEDNKLERLKFAMSFPRPSSSGSHFFDNMYSYVHVDEKWLYLTKVRRKFYVYDDEDVAVRSVKSKGFITKVMFLAAVAKPRYDYHERRMFDGKLGVWPFVESVPAKRTIKNRPKGTIETVHQSVNASVYQKTIMEKVIPAIRQKFP 300          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: A0A6A4Z2B2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z2B2_9STRA)

HSP 1 Score: 199 bits (506), Expect = 1.590e-55
Identity = 114/279 (40.86%), Postives = 166/279 (59.50%), Query Frame = 1
Query:   13 KNFNDSEKEAVIRHLLAGSNNGT-LRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANAR-KGNSGRKGIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCVEITKETYKTKLIDGVIPAIKEKWPA 843
            KN ++S++ AV++HLL   N  + L  GA  A    FG    T++ +W++        +   +  ++R KG+ GR  +  + +  RL+ +P   RTT R +AAAL +P STL    K      +S++++P+LTD  K+ R++W + +V +      V  +  D++ VDEKWF+     + ++L   EEPP R  +SK+FITKVMFL+AVARPR + A    F GK+G W FT KVPA R SRNR A TLVT  V +T+  YK  L+D VIPAIK KWP+
Sbjct:   26 KNLSNSDRTAVLQHLLTLVNGKSILPHGAFAAVAANFGVARSTVRLIWKRAAVNLNDKLRPCSDVSSRIKGHCGRN-LKHESVASRLQALPKAKRTTFRSIAAALNMPRSTLHAYYKRGIFVKYSSSVRPALTDSNKIVRVKWALDFVHALNENEYVFSDMMDYVHVDEKWFFATTVKRTYYLAPGEEPPHRTCKSKKFITKVMFLSAVARPRWDSAKGELFDGKLGTWHFTTKVPAARGSRNRPAGTLVTSPVSVTRSVYKAMLLDHVIPAIKRKWPS 303          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.850e-55
Identity = 117/278 (42.09%), Postives = 160/278 (57.55%), Query Frame = 1
Query:   16 NFNDSEKEAVIRHLLA-GSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCVEITKETYKTKLIDGVIPAIKEKWPAA 846
            N    E+  V   LL   S +G L  G+ K   ++F C W TI R+W++ +          ++ +  K  SGRK     +L +R+  IP  DRTT +R+A+ + +P ++L +  K   L  HS+ LKP LTD  K  RL+W   +V        V  +   ++ +DEKWFY+    +  +L   EEPP R  QSKRFITKVMFL+AVARPR N   +  F GKIG W FTE VPA RNSRNR + TLVT  V ++++TY+  L++ VIPAIK KWP A
Sbjct:    7 NLTKQERIDVSHQLLVLVSRDGKLPHGSFKRLAQRFNCSWLTISRIWKRANFCPESNTLLQDIGSRIKAASGRK-KKYTDLAQRIAAIPKTDRTTLKRIASIVNMPATSLHRYFKQGLLVRHSSHLKPLLTDANKAARLKWAQKFV----GPDLVFDDMMSYVHIDEKWFYMTRVKRTLYLLPGEEPPHRTTQSKRFITKVMFLSAVARPRWNYNKDEWFDGKIGTWHFTEVVPAQRNSRNRPSGTLVTVPVNVSRDTYRDMLVNNVIPAIKNKWPDA 279          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: UPI0010357E51 (uncharacterized protein LOC114265064 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010357E51)

HSP 1 Score: 195 bits (495), Expect = 2.900e-55
Identity = 113/281 (40.21%), Postives = 172/281 (61.21%), Query Frame = 1
Query:   10 RKNFNDSEKEAVIRHLLAGSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTDEGKVERLRWVMSWVR-SAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKC-VEITKETYKTKLIDGVIPAIKEKWPAA 846
            +KN  +  ++++   LL  S +G L+RG       +F    KT++R+W++       G+      +++  NSGRK +  Q    ++ +IPL  RT  R L+ AL +P ST+ + +K  ++RPHSNALKP L+ E K  RLR+ +S ++ ++  G  +  +  D++ +DEKWFY+  + +R++L  +EE P R  +SKRFITKVMFL AVARPR +   N  F GKI +W FT K PA +NS+NRAA TL TK  V +TK+  +  LI+ V+ AI+ KWP +
Sbjct:   25 KKNLTNHLRQSIFETLLIRSKDGKLKRGCQTEVAVKFSVHIKTVRRIWQRGIACMENGLMVN--VSSKLTNSGRKQV--QLNFGKVTEIPLRRRTNIRSLSKALNLPKSTVHRRIKEGKIRPHSNALKPYLSKENKRARLRFCLSMLKPNSLQGQPMFESMYDYVHIDEKWFYISKEAERYYLLPEEEEPHRCCKSKRFITKVMFLVAVARPRFDENKNEEFLGKIEIWPFTYKEPAKKNSKNRAAGTLETKAIVSVTKDVIRACLIEKVLSAIQSKWPCS 301          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: A0A6P6TEQ3_COFAR (uncharacterized protein LOC113700698 n=2 Tax=Coffea TaxID=13442 RepID=A0A6P6TEQ3_COFAR)

HSP 1 Score: 198 bits (503), Expect = 6.170e-55
Identity = 117/282 (41.49%), Postives = 162/282 (57.45%), Query Frame = 1
Query:    7 KRKNFNDSEKEAVIRHLLAGSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRV-LHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCV-EITKETYKTKLIDGVIPAIKEKWPAA 846
            K+KNF  + K A+   LL    NG L +G      E F    +++ R+W +     T     PNL+       GRK I  Q   E ++DIP   RT  R LA AL+V  S+L + +K   LRPHSN +KP L+ + K  RL++ +S +      S+    N  D I +DEKWFY+    QR++L+  E  P R  +SKRF+ K+MFLAAVARPR++   N  F GKIG+W F  K PA RNS+NR A TL TK +  ITK+  ++ LI+ ++PAI+EKWP +
Sbjct:   92 KKKNFTTALKRAIYEMLLKECENGKLSKGVISRVAECFDISTRSVSRIWHEGKCTATAYGHLPNLSPKLVKRVGRKKI--QVNLEDIKDIPFRRRTNIRSLAKALDVSKSSLHRRIKEESLRPHSNPVKPYLSTDSKKARLQFCLSMISEGTLASKFSFDNMHDRIHIDEKWFYMSKTSQRYYLHPLEHEPYRTCKSKRFVPKLMFLAAVARPRYDITLNKQFNGKIGIWPFVFKEPAKRNSKNRTAGTLETKPILSITKDVIRSCLIEKLLPAIREKWPCS 371          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: A0A6A4ZIA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZIA5_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.450e-54
Identity = 109/279 (39.07%), Postives = 170/279 (60.93%), Query Frame = 1
Query:   10 RKNFNDSEKEAVIRHLLAGSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGI-DKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLK-ALRLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCVEITKETYKTKLIDGVIPAIKEKWP 840
            +++   +E+ AV   LL  S+NG+L RG       QF C   T+ R+W +  +   GG    ++A+  +GNSGRK +   +E+   +R +P + R T R +A   ++P +T+ +++K A RL+  S+ +KP LT     ERLR+ MS++  ++ G+    +  D++ +DEKWFYL    ++F++Y+ E    R V+SKRFITKVMFLAA+ARPR      T F GKIG+W F EK+PA RNS+NRA  T++T    +  + Y   +++ V+PAIK K+P
Sbjct:   23 KRHLRPAERHAVYETLLGASSNGSLPRGIIVRVAAQFHCHALTVSRIWSQGQESIRGGRICADVASKIRGNSGRKKLRTNEEIEAAIRQVPQSARQTLRGMAFQADIPKTTIVRHMKEAARLKARSSYVKPFLTPANIQERLRFAMSFLPPSSDGNHFFSDLHDYVHIDEKWFYLTRVKKKFYVYEDEVVAARFVKSKRFITKVMFLAAIARPRVE-LDGTIFDGKIGVWPFVEKMPARRNSKNRAKGTMITTPQSVDAKVYLNMVLNNVVPAIKSKFP 300          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: W2NW41_PHYPR (HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NW41_PHYPR)

HSP 1 Score: 193 bits (490), Expect = 1.100e-53
Identity = 113/276 (40.94%), Postives = 162/276 (58.70%), Query Frame = 1
Query:   16 NFNDSEKEAVIRHLLAGSNNGTLRRGASKAAGEQFGCCWKTIKRLWRKYDQQHTGGVASPNLANARKGNSGRKGIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCVE-ITKETYKTKLIDGVIPAIKEKWP 840
            N   ++++ ++  LL  S+NG +  G   AA  ++     TI RLW  + +  T      NLA+   GN GRK ID  ELR ++R IPL+ R T + LAAAL V  + + + LK    R HS+ +KP+LT+E ++ R+++ +S       G  V  +  D + +DEKWF    D + ++L   EE PVR+ QSKRFI+K MF+AAVARPR++      F GKIG+WAF E+  A R S+NR   T+V + VE + +E YK   I  +IPAIK KWP
Sbjct:    5 NLTPTQRQTIVCFLLDRSDNGEISGGDISAAVAKYERHRSTISRLWELHKKTQTEENRLGNLASGLIGNCGRKAIDTDELRLQIRKIPLSRRMTIKSLAAALGVSTTVIRRLLKEGAFRRHSSNVKPALTEENRLARVQFALSHTTRKRGGEMVFADMFDVVHIDEKWFNEDTDRKCYYLDADEEEPVRQRQSKRFISKTMFIAAVARPRYDAHRKQAFDGKIGIWAFAEEYEAKRTSKNRPKGTIVLRNVESVDREAYKATHIGDIIPAIKAKWP 280          
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Match: W4HB86_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HB86_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.390e-53
Identity = 114/286 (39.86%), Postives = 171/286 (59.79%), Query Frame = 1
Query:    4 PKRKNFNDSEKEAVIRHLLAGSNNGTLRR---GASKAAGEQFGCCWKTIKRLWRKYDQQHTGGV-ASPNLANARKGNSGRK-GIDKQELRERLRDIPLNDRTTQRRLAAALEVPHSTLSKNLKALRLRPHSNALKPSLTDEGKVERLRWVMSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKVQSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNRAARTLVTKCVEITKETYKTKLIDGVIPAIKEKWPAA 846
            P+R+N  D E+EA++R +L  SN   + R   G S+   +++ C   TI+R+     QQ  GG      +A+  KG  GRK     ++++ +L  +PL  RTT R ++    +   +L + LK    R HSNA+KP LTD  K  R++  + +V S       L++   F+ +DEKWFY+    ++++L   E+ P R+ +SK++ITKVMFL AVARPR+N AT++ + GKIG+W F E V A R+S NR A TL TK + +TK+ Y+T L+D V+PAI  KWP A
Sbjct:    3 PERRNLTDDEREAILREVLLRSNGSYITRLPKGFSQELADKYKCHVSTIRRVLAVAKQQGIGGGNMKVTVASKMKGRVGRKKAFTAEQVKAKLLQVPLAQRTTLRSISERTGISLGSLHRYLKLGLFRSHSNAIKPLLTDANKYGRMKHAVEFVGSTLE----LNDMLQFVHLDEKWFYITKVSRKYYLVPGEKEPKRECKSKQYITKVMFLCAVARPRYNHATDSWWDGKIGIWPFVEPVAAQRDSVNRKAGTLETKSITVTKDVYRTFLLDKVLPAIVAKWPRA 284          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4FAY9_9STRA5.990e-6142.35Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A6H5L9I0_9PHAE3.150e-5875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0WUP2_9STRA8.190e-5639.57Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4Z2B2_9STRA1.590e-5540.86Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A485KBU5_9STRA2.850e-5542.09Aste57867_2438 protein n=2 Tax=Aphanomyces stellat... [more]
UPI0010357E512.900e-5540.21uncharacterized protein LOC114265064 n=1 Tax=Camel... [more]
A0A6P6TEQ3_COFAR6.170e-5541.49uncharacterized protein LOC113700698 n=2 Tax=Coffe... [more]
A0A6A4ZIA5_9STRA1.450e-5439.07Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W2NW41_PHYPR1.100e-5340.94HTH_Tnp_Tc3_2 domain-containing protein n=4 Tax=Ph... [more]
W4HB86_9STRA1.390e-5339.86Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1433531..1434678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008870373.1
Model size1148
Max annot lvl157072.XP_008870373.1|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.12e-35
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789320.6799152-UTR-P-littoralis_Contig1:1433530..14337361680789320.6799152-UTR-P-littoralis_Contig1:1433530..1433736Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1433531..1433736 -
1680789320.7079656-UTR-P-littoralis_Contig1:1434240..14346781680789320.7079656-UTR-P-littoralis_Contig1:1434240..1434678Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1434241..1434678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789320.6907063-CDS-P-littoralis_Contig1:1433736..14342401680789320.6907063-CDS-P-littoralis_Contig1:1433736..1434240Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1433737..1434240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.310.1prot_P-littoralis_Contig1.310.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1433737..1434240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.310.1

>prot_P-littoralis_Contig1.310.1 ID=prot_P-littoralis_Contig1.310.1|Name=mRNA_P-littoralis_Contig1.310.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=168bp
MSWVRSAAAGSRVLHNFDDFIRVDEKWFYLFVDGQRFHLYDKEEPPVRKV
QSKRFITKVMFLAAVARPRHNPATNTTFKGKIGLWAFTEKVPAVRNSRNR
AARTLVTKCVEITKETYKTKLIDGVIPAIKEKWPAATPPSSSRTTRGRTV
STRTRPCWRRAHRVDLT*
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mRNA from alignment at P-littoralis_Contig1:1433531..1434678-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.310.1 ID=mRNA_P-littoralis_Contig1.310.1|Name=mRNA_P-littoralis_Contig1.310.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1148bp|location=Sequence derived from alignment at P-littoralis_Contig1:1433531..1434678- (Pylaiella littoralis U1_48)
GTGCCAAAACGCAAGAATTTCAACGATTCAGAAAAAGAGGCAGTGATTCG CCACCTCCTCGCTGGCAGCAACAACGGGACCTTGAGGCGAGGTGCCTCCA AGGCAGCCGGGGAGCAGTTCGGCTGCTGCTGGAAAACGATCAAGAGGTTG TGGAGGAAGTACGACCAGCAGCATACAGGAGGAGTCGCCAGCCCGAATCT CGCAAACGCTCGCAAGGGGAACAGCGGCCGGAAGGGTATCGACAAACAAG AACTACGTGAGCGGCTCCGTGATATCCCACTGAATGACCGCACCACACAG CGCCGGTTAGCTGCGGCGCTTGAGGTCCCACACTCCACGCTCTCCAAGAA CCTCAAGGCGCTTAGATTGAGGCCACACTCGAACGCGCTCAAGCCGTCCC TCACCGACGAGGGGAAGGTTGAAAGGCTGAGATGGGTGATGAGTTGGGTG CGGAGCGCTGCAGCGGGCTCCAGAGTGCTGCACAACTTCGACGACTTCAT TCGCGTGGACGAGAAATGGTTTTATCTCTTCGTCGATGGGCAGAGGTTCC ACTTGTACGACAAGGAGGAGCCCCCTGTCCGCAAGGTCCAGAGCAAGAGA TTCATCACGAAGGTCATGTTTCTCGCTGCTGTTGCTCGCCCACGTCACAA CCCAGCAACCAACACCACCTTCAAGGGTAAGATCGGCTTGTGGGCATTCA CAGAGAAGGTGCCTGCTGTACGCAACAGCCGGAACCGTGCTGCTAGAACT CTTGTCACGAAGTGTGTGGAGATTACCAAGGAGACGTACAAGACGAAGCT GATCGACGGGGTGATCCCCGCAATCAAGGAAAAGTGGCCGGCTGCGACCC CACCTTCATCCAGCAGGACAACGCGAGGCCGCACCGTGTCAACGAGGACC AGGCCTTGCTGGCGGCGTGCTCATCGGGTGGATTTGACATAAAAGTCGTC AACCAGCCGCCCAACAGCCCTGATACCAACATCCTGGACCTGGGTTTCTT CGCCTCAATCCAGTCCCTGCAGGACCGCACTCGAGCCAGGACTATAGACG ATCTCATCAGCGAGGTCGAGAGCGCATGGGCGGCGGCGGACCCGGCCAAG CTGGGCAAGGTGTGGACTTCGCTTCAGGCTTGCATGGAGCTGCTACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1433531..1434678-

>mRNA_P-littoralis_Contig1.310.1 ID=mRNA_P-littoralis_Contig1.310.1|Name=mRNA_P-littoralis_Contig1.310.1|organism=Pylaiella littoralis U1_48|type=CDS|length=504bp|location=Sequence derived from alignment at P-littoralis_Contig1:1433531..1434678- (Pylaiella littoralis U1_48)
ATGAGTTGGGTGCGGAGCGCTGCAGCGGGCTCCAGAGTGCTGCACAACTT
CGACGACTTCATTCGCGTGGACGAGAAATGGTTTTATCTCTTCGTCGATG
GGCAGAGGTTCCACTTGTACGACAAGGAGGAGCCCCCTGTCCGCAAGGTC
CAGAGCAAGAGATTCATCACGAAGGTCATGTTTCTCGCTGCTGTTGCTCG
CCCACGTCACAACCCAGCAACCAACACCACCTTCAAGGGTAAGATCGGCT
TGTGGGCATTCACAGAGAAGGTGCCTGCTGTACGCAACAGCCGGAACCGT
GCTGCTAGAACTCTTGTCACGAAGTGTGTGGAGATTACCAAGGAGACGTA
CAAGACGAAGCTGATCGACGGGGTGATCCCCGCAATCAAGGAAAAGTGGC
CGGCTGCGACCCCACCTTCATCCAGCAGGACAACGCGAGGCCGCACCGTG
TCAACGAGGACCAGGCCTTGCTGGCGGCGTGCTCATCGGGTGGATTTGAC
ATAA
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