prot_P-littoralis_Contig1.226.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1.226.2
Unique Nameprot_P-littoralis_Contig1.226.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length304
Homology
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 8.520e-118
Identity = 192/276 (69.57%), Postives = 218/276 (78.99%), Query Frame = 0
Query:    1 MMMARARHAAVCLVLAVLTTTNVVPRVGAFTGGLRAAVTQQLRPHDCSMAAASSTVVSRRSPRNSNAXXAGVPSS---TRRRLASPSALPMAP-MDFPGAGAGAGSPERDPRELDPALEGNAGDTYVKCGKCQACYAVKVEVLGRGRIIECSVCGNKWFQTAERALTLTENFLMKDWTENRAKDAAEAAKRVASFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVKVGASNASG 272
            M M R RHA +CLVLA LTT  V+P VGAF+GGLR A+TQQ  PHDCSM A+SSTV    SPR  N   A V  S         SP+AL MAP MDF GA       E+DPRE+DP+L+G+AGDTYVKCGKCQACY ++++VLGRGRIIECSVCGN+WFQTAERALTLTENFLMKDWTE+R    AEAAK  A F LFVGNIP SVSEKDLGAIFGNFG+VKS  LVTD NGDS+GYG+V+M + EDG+KAIKALNGIEIQG+SMLVKVGASN++G
Sbjct:   30 MTMGRTRHAGLCLVLAALTTMAVIPGVGAFSGGLRVAITQQ--PHDCSMVASSSTV----SPRPLNPAAAAVTPSGXXXXXXXXSPTALSMAPPMDFGGAEPA----EKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSAG 295          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 112 bits (281), Expect = 1.260e-25
Identity = 69/196 (35.20%), Postives = 105/196 (53.57%), Query Frame = 0
Query:   90 PMDFPGAGAGAG--SPERDPRELDPALEGNAGDTYVKCGKCQACYAVKVEVLG-RGRIIECSVCGNKWFQTAERALTLTENFLMKDWTENRAKDAAE------------AAKRVASFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVKVGASNA 270
            P   P A  G G  +P+ DP              +V+CG+C A YAV  +++   G  ++C VCG+ WFQ + R   L+  +++KD+ E+  +  AE            AAK   S  +FVGN+P S++E D+  +F   G V S T+V D    SKG+G V M   E+G++AI AL+G E+ G+ + V++G S A
Sbjct:   83 PRPSPAAAVGVGDAAPKSDPNV----------QYFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAIS--VFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKA 266          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: A0A7S3TR26_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 103 bits (256), Expect = 7.590e-23
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 0
Query:  107 PRELDPALEGNAGDTYVKCGKCQACYAVKVEVLGRGRIIEC--SVCGNKWFQTAERALTLTENFLMKDWTENRAKD---AAEAAKRVASFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVKVGASNASG 272
            PR     ++  A   +V C +C+A + V       GR + C  + C ++WFQTA+R  TL     + ++ +   KD   A ++A+ V  F +FVGN+  SV+E DL  +F   G V    ++TD +G  +G+G V M     G +A+K L+G E+QG+S+ V  G  N  G
Sbjct:   21 PRHESALMQTKAPSKFVTCARCKATFEVDEADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEM-KDRIAAGKSAEPVGRFNIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQNDRG 190          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: A0A7R9WVI4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVI4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.270e-22
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 0
Query:  121 TYVKCGKCQACYAVKVEVLG--RGRIIECSVCGNKWFQTAERALTLTENFLMKDWTENRAKDAAE------AAKRVASFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVK 264
            TY +CG+C   +A+  + LG  RGR +ECSVCG+ W+Q+ +R   +   F + D  E   +  A       + K V   +L+VGNI  + +E+D+   F   GDV   +LV D  G ++G+G + M + E G+KAI+ L+G  + G+++ V+
Sbjct:   70 TYARCGRCDTSFALAPDDLGNGRGRRLECSVCGHTWYQSKDRLSNMNGGFEIIDLPETDLQRIANNIEEGRSPKFVGEMKLYVGNIAFTCTEQDMQEAFSEAGDVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIELLDGASVNGRNIAVR 221          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: A0A7S1Z4Z8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z8_TRICV)

HSP 1 Score: 100 bits (248), Expect = 2.210e-21
Identity = 56/154 (36.36%), Postives = 92/154 (59.74%), Query Frame = 0
Query:  121 TYVKCGKCQACYAVKVEVLG---RGRIIECSVCGNKWFQTAERALTLTENFLMKDWTEN---RAKDAAEAAKRVASF----ELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVK 264
            TYV+CG+C A YA++ + LG   +GR +ECSVCG+ W+Q+ +R   L+  F  + + ++   R K   EA  R A F    + +VGN+     E+ +   F   G V   +L+TD +G S+G+  V M + EDG+KA++ L+G E+ G+++ V+
Sbjct:   79 TYVQCGRCHAAYAIQEDDLGDRGKGRRVECSVCGHSWYQSRDRLFGLSTGFEYRPFPQSDVVRVKSNLEAG-RPADFRGVAKFYVGNLDYGTDEESVRVHFETAGTVGDVSLITDEDGRSRGFAFVTMMTEEDGEKAVQ-LDGTELAGRNISVR 230          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: A0A6V2PYU0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYU0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.220e-21
Identity = 53/154 (34.42%), Postives = 89/154 (57.79%), Query Frame = 0
Query:  120 DTYVKCGKCQACYAVKVEVLG---RGRIIECSVCGNKWFQTAERALTLTENFLMKDWTENRAKDAAE--AAKRVASF----ELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVK 264
            +TY +CG+C   +A+  E LG   +GR +ECSVCG+ W+Q  ++   + E F + +  ++         AA R   F    +L+VGN+   V+E+DL   F    +V   T++TD +G SKG+  V M + E G+KA++ L+G E+ G+++ V+
Sbjct:   64 ETYARCGRCSTSFALTSEDLGDRGKGRRVECSVCGHSWYQARDKLFDIREGFELVELPQSDVSRIERNIAADRDPRFTGDSKLYVGNLDFKVTEEDLFEEFSKVDEVGDVTIITDDSGRSKGFAFVTMLTKEGGEKALEKLDGEEVFGRNLNVR 217          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: A0A2V3J103_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J103_9FLOR)

HSP 1 Score: 97.1 bits (240), Expect = 7.130e-20
Identity = 59/187 (31.55%), Postives = 96/187 (51.34%), Query Frame = 0
Query:  105 RDPRELD--PALEGNAGDTY-VKCGKCQACYAVKVEVLGRGRIIECSVCGNKWFQTAERALTL--TENF----------LMKDWTENRAKDAAEAAKR------VASFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVKVGASNA 270
            RDPR  +  P    +    Y  KC KC A Y +   VLG GR + CSVC N+WFQ  +R   +  TE F          L++   +NRA+       R        +F +F+GN+P SV+E++L  +  +    K  ++VTD +G+SKG+    + S E+  + +++L+   I G+++ V+ G  N+
Sbjct:   91 RDPRRFESPPRFTPDPNAVYYTKCAKCSAAYELDPLVLGNGRRVACSVCSNEWFQKPDRLFKMRETEQFSEYPMDRKAELLERNQQNRARGGRRRDTRDRRPTYTKTFSVFIGNLPYSVTEQELTELISSVVKPKRISIVTDQDGNSKGFAFADVQSEEEVDQIVRSLDATRIAGRTIAVRPGKKNS 277          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: L1IF02_GUITC (RRM domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IF02_GUITC)

HSP 1 Score: 92.4 bits (228), Expect = 1.170e-18
Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 0
Query:  122 YVKCGKCQACYAVKVEVLGR-GRIIECSVCGNKWFQTAER-----ALTLTENFLMKDWTENRAKDAAEAAK-----RVASFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDA-NGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVKV 265
            Y  CGKC A Y +    LG  G+ ++CSVC NKWFQ+A R     A +    F + +W +    ++    K     R  +F LFVGN+P  +SE +L A+F   G+V S +L+ D  +G  +G+G V   + +  + A+  LNG+ + G+ + V +
Sbjct:   55 YTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSI 210          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: R7QQ59_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ59_CHOCR)

HSP 1 Score: 85.1 bits (209), Expect = 1.960e-15
Identity = 49/187 (26.20%), Postives = 85/187 (45.45%), Query Frame = 0
Query:  122 YVKCGKCQACYAVKVEVLG-RGRIIECSVCGNKWFQTAERALTLTENFLMKDWTENRAKDAAEAAKRV--------------------------------------ASFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVKVGASN 269
            + KCG CQA Y +  +  G RG+ + CSVCGN+WFQ A+R +TL +    K++  ++  +  E  +++                                      +   LF+GN+P +  ++DL  + G   +     ++ D  G SKG+    + S E  Q A+  L+G E+ G+++ V+ G  N
Sbjct:  106 FTKCGSCQAAYKLDPDFPGPRGKKVACSVCGNQWFQRADRLMTLRQGDQFKEYPVDQKDELMEKQQQLRMERFRARSNDGGDRRGGYRRDGPREGQGARRSNSRNFSPHSLFIGNLPFNTEQEDLERVVGQVVEFTRVAIIRDPTGRSKGFAFADVKSEEAVQMAVSKLDGKELGGRAITVREGRKN 292          
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Match: A0A519E0E8_9BURK (RNA-binding protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519E0E8_9BURK)

HSP 1 Score: 77.0 bits (188), Expect = 6.090e-14
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 0
Query:  190 SFELFVGNIPLSVSEKDLGAIFGNFGDVKSATLVTDAN-GDSKGYGNVRMTSAEDGQKAIKALNGIEIQGKSMLVKVGASNASGXXXXXXXGR 281
            S +++VGN+P SV++  L + FG  G VKSA ++TD + G+SKG+G V M SAED Q AI ALNG+++ G+S++V +      G       GR
Sbjct:    2 STKIYVGNLPYSVTDASLRSNFGEHGSVKSAKVMTDRDTGNSKGFGFVEMASAEDAQAAITALNGMQVDGRSIVVSLARPREGGNDGGSRGGR 94          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.226.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE8.520e-11869.57RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
I2CR05_NANGC1.260e-2535.20RRM domain-containing protein (Fragment) n=3 Tax=M... [more]
A0A7S3TR26_EMIHU7.590e-2333.92Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7R9WVI4_9STRA1.270e-2234.87Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1Z4Z8_TRICV2.210e-2136.36Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6V2PYU0_9STRA3.220e-2134.42Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2V3J103_9FLOR7.130e-2031.55Putative RNA-binding protein RbpE n=1 Tax=Gracilar... [more]
L1IF02_GUITC1.170e-1833.97RRM domain-containing protein n=1 Tax=Guillardia t... [more]
R7QQ59_CHOCR1.960e-1526.20RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A519E0E8_9BURK6.090e-1444.09RNA-binding protein n=1 Tax=Rubrivivax sp. TaxID=5... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 192..264
e-value: 5.3E-21
score: 85.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 193..260
e-value: 1.9E-18
score: 66.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 191..268
score: 17.455235
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 169..302
e-value: 1.6E-28
score: 101.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..81
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 191..298
NoneNo IPR availableCDDcd00590RRM_SFcoord: 193..264
e-value: 3.3293E-20
score: 80.8121
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 189..299

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1105958..1110578 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.226.2mRNA_P-littoralis_Contig1.226.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig1 1105952..1110578 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1.226.2 ID=prot_P-littoralis_Contig1.226.2|Name=mRNA_P-littoralis_Contig1.226.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=304bp
MMMARARHAAVCLVLAVLTTTNVVPRVGAFTGGLRAAVTQQLRPHDCSMA
AASSTVVSRRSPRNSNAAAAGVPSSTRRRLASPSALPMAPMDFPGAGAGA
GSPERDPRELDPALEGNAGDTYVKCGKCQACYAVKVEVLGRGRIIECSVC
GNKWFQTAERALTLTENFLMKDWTENRAKDAAEAAKRVASFELFVGNIPL
SVSEKDLGAIFGNFGDVKSATLVTDANGDSKGYGNVRMTSAEDGQKAIKA
LNGIEIQGKSMLVKVGASNASGAGGGGGRGRSFQGRGGGGRGGYAAGRGG
GGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf