mRNA_P-littoralis_Contig21.115.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.115.1
Unique NamemRNA_P-littoralis_Contig21.115.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: D7FNQ1_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ1_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 2.070e-112
Identity = 192/264 (72.73%), Postives = 208/264 (78.79%), Query Frame = 3
Query:  135 MEVPVFPYQETRRGEVVALRGWLARGGQINSPLLRSVAETWTPLTLACAEGDVALVRLLVETGGARASASVGTKVLASSAPLHVASRYGHAGVATVLLELGAVVDARDTIGMMPLHYAAGNGHLKTIEVLLGAGAGTSSSXXXXXXXXXXXXXXXESPGGATALDLAEMAGFHDAAALLRSRALA-RDG---VARRRALGSWLGALGCKEFLGRFLKAGYDDLPFMAAQGLTEADLDCVGVPRDKLGLRKKLLAMHDVDMFLDA 914
            M+ PVFPYQETR G+  ALR WL++GG I++PLLRSVAETWTPL LACAEG V LVR +VE GGAR S S  TKVLASS+PLHVASRYGHAGVA VLLELGAVVDARDT G  PL YAAGNGHLKTIEVLL AGA  SSS               E+P  A ALD+AEMAGF DAA LLRSRALA  DG   V RR+ L SWLG LGC+EFLGRFL+AGYDDL FMA+QGLTEADLDCVGVP DKLGLRKKLLAMH V+ FL+A
Sbjct:    1 MDAPVFPYQETRGGDFSALRHWLSQGGTIDAPLLRSVAETWTPLALACAEGRVELVRAIVEIGGARPSFSAQTKVLASSSPLHVASRYGHAGVAAVLLELGAVVDARDTFGFTPLCYAAGNGHLKTIEVLLEAGADASSSF--------------EAPYAAKALDMAEMAGFDDAATLLRSRALAGEDGGEAVRRRKTLASWLGVLGCREFLGRFLRAGYDDLQFMASQGLTEADLDCVGVPGDKLGLRKKLLAMHGVEGFLNA 250          
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: A0A835YT05_9STRA (A designed full consensus ankyrin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT05_9STRA)

HSP 1 Score: 160 bits (405), Expect = 3.830e-41
Identity = 106/256 (41.41%), Postives = 137/256 (53.52%), Query Frame = 3
Query:  147 VFPYQETRRGEVVALRGWLARGGQINSPLLRSVAETWTPLTLACAEGDVALVRLLVETGGARASASVGTKVLASSAPLHVASRYGHAG--VATVLLELGAVVDARDTIGMMPLHYAAGNGHLKTIEVLLGAGAGTSSSXXXXXXXXXXXXXXXESPGGATALDLAEMAGFHDAAALLRSRALARDGVARRRALGSWLGALGCKEFLGRFLKAGYDDLPFMAAQGLTEADLDCVGVPRDKLGLRKKLLAMHDVDMFL 908
            +FPY   R G+++A   W  R    +    R   E WTPL LA AEG+ A V  L++ G AR  +   +KVL    PLHVA+RYG +   VA +L   GA   A D+ GM PLHYAA +GH    + LL AGA   +                 + G  T LD A +   H A A L   A AR+G   R  L +WL +LGC  +   F  AGYDDL F+AA GL+  DLDC+GVP  +LGLR+KL A+H++   L
Sbjct:   21 LFPYAAVRTGDLLAAASWAYRSNSSDWANARLAGEQWTPLHLAVAEGNHAAVAFLLQHG-ARPDSIATSKVLPGHTPLHVAARYGSSPDIVAALLAAPGADAGAADSHGMTPLHYAACSGHADCAQQLLSAGASALAP---------------SAHGALTPLDAARLC-RHAAVAALLEAAAAREGA--RAPLAAWLRSLGCGAYARAFAAAGYDDLAFIAAHGLSAEDLDCIGVPMAQLGLRRKLTALHNIAQHL 257          
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: A0A7S2FWK0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FWK0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.250e-19
Identity = 99/256 (38.67%), Postives = 126/256 (49.22%), Query Frame = 3
Query:  135 MEVPVFPYQETRRGEVVALRGWLARGG-QINSPLLRSVAETWTPLTLACAEGDVALVRLLVETGGARAS--ASVGTKVLASSAPLHVASRYGHAGVATVLLELGAVVDARDTIGMMPLHYAAGNGHLKTIEVLLGAGAGTSSSXXXXXXXXXXXXXXXESPGGATALDLAEMAGFHDAAALLRSRALARDGVARRRALGSWLGALGCKEFLGRFLKAGYDDLPFMAAQGLTEADLDCVGVPRDKLGLRKKLLAMHD 893
            M    FP +  R GE V +  W+  GG  I+ P      E W PL L  AEG+ A V  ++ T GAR    A      +     LH+A+RYGHA V + L+  GA V+ RD  G  PL                         XXXXXXXXXXXXXXX                  + AALLR+R  + +     + L SWL +LGC ++  RFL AGYD   +++  GL E D+D V VPR KLGLRKKLLA+ +
Sbjct:    1 MATAPFPIEAARHGEYVPIATWVQTGGGAIDQPFK---FEDWNPLQLLAAEGNKAGVEAVL-TAGARVDFHAQPAAPGVPWQTALHIAARYGHAEVVSALVSAGADVNLRDGSGFAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXH----------------RELAALLRTRKASPEASDHDK-LASWLESLGCAKYTTRFLDAGYD-FQYISEHGLAEDDIDLVQVPRTKLGLRKKLLALQN 234          
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: A0A8K1FNW7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNW7_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 1.260e-13
Identity = 64/220 (29.09%), Postives = 106/220 (48.18%), Query Frame = 3
Query:  255 WTPLTLACAEGDVALVRLLVETGGARASASVGTKVLASSAPLHVASRYGHAGVATVLLELGAVVD--ARDTIGMMPLHYAAGNGHLKTIEVLLGAGAGTSSSXXXXXXXXXXXXXXXESPGGATALDLAEMAGFHDAAALLRSRALARDGVARRRALGSWLGALGCKEFLGRFLKAGYDDLPFMAAQGLTEADLDCVGVPRDKLGLRKKLLAMHDVDMFL 908
            WTPL  ACA GD  L   ++     +  +   TK   S + LHVA+R+G A +   LL+ GA+    A   +G  PLH A   G++  ++ LL A                       +  G T  +LA+  G  + + +L+           +  LG+WL ++G  E+  +F +AG++D+ F+ A GLT++ LD + +  +K G R KL +++ +  FL
Sbjct:   28 WTPLQFACALGDEELAEQILAQDEHQLHSVSKTKY--SYSALHVATRFGQASIVDSLLKKGAMTTTPADGVVGASPLHIAVVQGNMPLVQRLLSA----------------YPHGMPMTKNGTTPYELAKRLGHVEISQVLQDH---EQRAQNKEQLGNWLASIGMVEYAPQFEEAGFEDVHFLLANGLTDSVLDRMKI--EKPGHRMKLQSLYQLKEFL 224          
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: A0A482UJW8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJW8_9ARCH)

HSP 1 Score: 67.4 bits (163), Expect = 2.540e-10
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  738 LGCKEFLGRFLKAGYDDLPFMAAQGLTEADLDCVGVPRDKLGLRKKLLAMHDVDMF 905
            LG  E+L RFL AGYD LPF+   GL++ DLDC+GVP +K+GLR+K+  +H +D F
Sbjct:   10 LGGSEYLQRFLDAGYD-LPFIHTHGLSDVDLDCIGVPVNKMGLRRKMSKLHGLDRF 64          
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: UPI00148570DD (ankyrin repeat domain-containing protein n=1 Tax=Herbidospora galbida TaxID=2575442 RepID=UPI00148570DD)

HSP 1 Score: 55.8 bits (133), Expect = 1.430e-5
Identity = 47/124 (37.90%), Postives = 62/124 (50.00%), Query Frame = 3
Query:  174 GEVVALRGWLARGGQINSPLLRSVAETWTPLT-LACAEGDVALVRLLVETGGARASASVGTKVLAS-SAPLHVASRYGHAGVATVLLELGAVVDARDTIGMMPLHYAAGNGHLKTIEVLLGAGA 539
            G+   LRG L  G   N      V +  TPL  LA   G + ++R+LVE GG     S+   V+A    P           +  VLLELGA V+ARD+ G MPLH+A+  G+  +   LL AGA
Sbjct:   13 GDTAGLRGMLLSGADPN------VVDDGTPLVELAVRFGRIGVLRVLVEFGGTLDVPSLLHNVVAGRELP----------DMLLVLLELGADVNARDSAGWMPLHFASAYGYEGSARALLDAGA 120          
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: A0A8B7YPL6_ACAPL (transient receptor potential cation channel subfamily A member 1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YPL6_ACAPL)

HSP 1 Score: 58.5 bits (140), Expect = 2.750e-5
Identity = 37/123 (30.08%), Postives = 64/123 (52.03%), Query Frame = 3
Query:  174 GEVVALRGWLARGGQIN-SPLLRSVAETWTPLTLACAEGDVALVRLLVETGGARASASVGTKVLASSAPLHVASRYGHAGVATVLLELGAVVDARDTIGMMPLHYAAGNGHLKTIEVLLGAGA 539
            G+  A++  L  G +I+   +++   E  TPL LAC +G + +V+L++ TG      ++         PLH A+ + HA +   LL+ G+ +DA+D     PL  A   G  +++ +LL  GA
Sbjct:  293 GDFAAVKLCLKYGARIDVQQVIKCKGERATPLHLACTQGSLDIVKLMLSTGQTDKDTALNVPDCQLQLPLHRAAMFDHAEIVDYLLQEGSYIDAQDKNQRTPLLLATQRGSWRSVLLLLERGA 415          
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Match: A0A4U3MF20_9ACTN (Uncharacterized protein n=1 Tax=Herbidospora galbida TaxID=2575442 RepID=A0A4U3MF20_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 3.820e-5
Identity = 47/124 (37.90%), Postives = 62/124 (50.00%), Query Frame = 3
Query:  174 GEVVALRGWLARGGQINSPLLRSVAETWTPLT-LACAEGDVALVRLLVETGGARASASVGTKVLAS-SAPLHVASRYGHAGVATVLLELGAVVDARDTIGMMPLHYAAGNGHLKTIEVLLGAGA 539
            G+   LRG L  G   N      V +  TPL  LA   G + ++R+LVE GG     S+   V+A    P           +  VLLELGA V+ARD+ G MPLH+A+  G+  +   LL AGA
Sbjct:   78 GDTAGLRGMLLSGADPN------VVDDGTPLVELAVRFGRIGVLRVLVEFGGTLDVPSLLHNVVAGRELP----------DMLLVLLELGADVNARDSAGWMPLHFASAYGYEGSARALLDAGA 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FNQ1_ECTSI2.070e-11272.73Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A835YT05_9STRA3.830e-4141.41A designed full consensus ankyrin n=1 Tax=Tribonem... [more]
A0A7S2FWK0_9STRA1.250e-1938.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1FNW7_PYTOL1.260e-1329.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A482UJW8_9ARCH2.540e-1055.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI00148570DD1.430e-537.90ankyrin repeat domain-containing protein n=1 Tax=H... [more]
A0A8B7YPL6_ACAPL2.750e-530.08transient receptor potential cation channel subfam... [more]
A0A4U3MF20_9ACTN3.820e-537.90Uncharacterized protein n=1 Tax=Herbidospora galbi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:444465..450267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNQ1
PFAMsAnk_2,SAM_1,SAM_2
Model size1545
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.24e-115
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_004680.1
Descriptionspectrin binding
Cds size1047
COG categoryI
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790022.4619293-UTR-P-littoralis_Contig21:444464..4448281680790022.4619293-UTR-P-littoralis_Contig21:444464..444828Pylaiella littoralis U1_48UTRP-littoralis_Contig21 444465..444828 -
1680790022.4907405-UTR-P-littoralis_Contig21:445875..4459071680790022.4907405-UTR-P-littoralis_Contig21:445875..445907Pylaiella littoralis U1_48UTRP-littoralis_Contig21 445876..445907 -
1680790022.5036902-UTR-P-littoralis_Contig21:450165..4502671680790022.5036902-UTR-P-littoralis_Contig21:450165..450267Pylaiella littoralis U1_48UTRP-littoralis_Contig21 450166..450267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790022.4819248-CDS-P-littoralis_Contig21:444828..4458751680790022.4819248-CDS-P-littoralis_Contig21:444828..445875Pylaiella littoralis U1_48CDSP-littoralis_Contig21 444829..445875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.115.1prot_P-littoralis_Contig21.115.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 444829..445875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.115.1

>prot_P-littoralis_Contig21.115.1 ID=prot_P-littoralis_Contig21.115.1|Name=mRNA_P-littoralis_Contig21.115.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=349bp
MEVPVFPYQETRRGEVVALRGWLARGGQINSPLLRSVAETWTPLTLACAE
GDVALVRLLVETGGARASASVGTKVLASSAPLHVASRYGHAGVATVLLEL
GAVVDARDTIGMMPLHYAAGNGHLKTIEVLLGAGAGTSSSFSSSSSSSSS
SLSSSESPGGATALDLAEMAGFHDAAALLRSRALARDGVARRRALGSWLG
ALGCKEFLGRFLKAGYDDLPFMAAQGLTEADLDCVGVPRDKLGLRKKLLA
MHDVDMFLDATSGGSGGSSGTEDASTVETASESGEEGSSSGDEGDSGDDG
DVDGGSDEDEDRFGSDGDRGETSSTVDGSDGDGSSGSGGSGSDSESDA*
back to top

mRNA from alignment at P-littoralis_Contig21:444465..450267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.115.1 ID=mRNA_P-littoralis_Contig21.115.1|Name=mRNA_P-littoralis_Contig21.115.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5803bp|location=Sequence derived from alignment at P-littoralis_Contig21:444465..450267- (Pylaiella littoralis U1_48)
CTCGAGGTGGGTGCTAGTCGCACCACACTCGACCGTGGCGAGAGAGGCAA GGATCTAAAGAGGGTGATTCTGGGGAGCAGCAACGCATATTTCTGAAATA TCGTAAGTCAATCGGTGTGTGTCGTGTGTCGCGCTGTACAGCAGCACTTG ACAAGGGATATGATACATTACAGCAGGATGTGTACAGAAGTCTAGAATGA TATCATACGATATGTAGTGCGAAGAGAGGAGGATCGTATCTTTTTTCACC CGCCTGCCCGCGTGCGCATCCTGTAAAAGAGCAATCTGGATCCTGGTCGA GGACCCTCTCCTACACTCACTTGGGAATGTTTAATTTCTTCTCGTCCTGT GTGGGTGTTATCATCAGAGCGCTTATTTTTTTTTTTTTAACATTTCGAAA TTTCGGACCTTCGAAATTTCGAGATTGCACATGCTCCTGAGTGTATTTTT TATTTTTCTTACATATATTTGTGGAATTCAAAACGGTGTTTGTTCTTGTC TGGGTGTGTGTGACGCCACTCTGCACCTTTTGGGTAGGTCGACGCTCCAA CTGGGGTCACACAGGGGGAAGTCAACACGAGAGATTTTTTTTTTCTTTCT CGACTTCCCTCTGCGGTGCTTGCCTTGTTTTGGTTGAGCTTTTATCGCGA GAAAAGGGACAGCGATCCCTTTCCCTCGTCGATGGTACGATCGAATTTTG TTTACTCACGAATTAATCGCTTTCCACTTTCACGCGCATTTTGTGAGAAG AAAACCCAGATCGTGTTGTTACTGCACTGGGATTCGGACTCACGCGTGAA TGTCAGAAGGTTGCGTGGATTACCAACTGAACCACCAGGCAGGGCGACCG GTGGTTCAGTTGGTAATAACGTCTGTAGGAACGTAAAATCTACTGCTGCA CGAAAAACATCAAATCACCACCACCATCACTATGTATGCCAAGGATGATG CCAACAGCACAAATATAGATCGTAAACACTCAACACATGGTGTAACGTAT GTCATGCAAGACGACCACCAAATTGTCTTGTTGAGCCTGAGACCCTCAGG GGAGCTGCAATGGTACATTGTCTGCTGAGTAAAGAAACACTGGTAGATGT ATTTCACTCTTTGTGTTCGTTGCAATATCTGCTCCAGATCCTTGTCCGGA GAGAGGCGAACACATTGATGTTTTTGTAAGTTAAAAAAAAAAAATGGACA GGCGAACATGTTGATGTTTTGGTGAGTTTTAAAAAAAATGGGGCAGCACC TGTGGTTCGCTCTGCTTCGAAATTCCGAATTTTCGCATTTATTTGAATCC TTCGGCATCAAGGATATATCTTCAAATGCGAAATTGTGGAGCTTTTTTCT TTTTTAAAAACTTACAGAAACATCAATGTTTTTCGAAGAAGTAGTGGTTT TTGAACTGATTGGTTGTTCACCGAATCGCTCCGAACGTTCGAAATTCCGA ACAAAAATCGAAGGATGTGCGTGCGTTGATTCAAACACCCCTGTAATGGG ATCTACCCTTTCTTTTTTAACCCTTCTGGGACCAGGGTACTTCGGCGGGG CAACCCGAATAGCCCGGGGGTTCTAAAAACACTGAACCAGCCGGTATTCC ACCGCCCGAGAACCAGACACAAAGAAAGCCAGCTCTTGGCTCCGCGTGCA CAAATCAAGAAAAGTGACATGTGAGCACCTCACAGTTATTTAGCCAGGGT CACAAACACAAGGTCTCGCAACAGACTGGTAGCCTCTCCACTAGTAGAGT TATCCGATGATCGCGATGCCCCCTCCTGCTCTCAAATATCTCGAAATCAT GATTGGTCATCACAGGCCTTCCTCCCCCATATCCAAATGAAACCAAGACA ATTCAGGAATGGCGCTTTTTTTTGCGCATTTTTGTCCACAGTAGCCCTCA ACCTACATTTTGTCAATCTGGGGCACGGCAGGATGCATGTAGCAGGCCCT GCGGTGGTTGGAAGACTGCTTTCTGTGTGTTGCTCGTGTTGGATACTGCT GTGCGGTGTTTTCTTTTACACTGAATGCTGTGCAACAAAATCCATCGCGT TTTTTGGTTCGGGACTTGTTGTTTTCGTCCTCATCCTGGACTCCATCCCC ATGTCCCCGACGAGCCGGCCCCAAGAAAAAAACAAAAATGAACAATTTTC AGTGAACAAAAAAATGCACTGAAGACCCAAAAGGGTTAAAAAACTTACAA AAACATCAATGTGTTCGCCTCTCTCCAGACAAGGATCTGGAGCAGATATT GCAACGAACACAAAGAAGAGTAAAATACGCCTACCAGTGTTTCTACACTT ATCAGATAATGTACCGTTGCAGCTCCCCTTGAGGGTATCAGGATCAACAA GACAATTACTTGCACTTCAGCTCTAACAAGTACTACTTCGAAATACGCAC TTGTTTAGATTCCTTGTTTCTTTCACCCTTCTCTCCCTCTGTGTCAGCAA ATTTTCAAAAGGTTGGATATGCCTGTGTCTCTGTGCACGCAAATGAAGCG ACAAAACCAAAATGCTACCTGGCACTCTGGATCGAGAGCTTTTTGTACAT GTGTGTGTGATCATCCCCATTTATTCTGGCGCCTGTCTATGCACCTTTCG GTTGATGTTTTTGACGTGAAGCCGGGGTTACACAACAGGAGAAAGGTCGC ACACGAGCTTTTTTTTTTCCTTTTATTGCCCACACCTTTCCCCCTGCGGT ACTTGCCTTTACTTTTGAACGCAAGTCGGTTTCAGTTATCTCTTCTCGCT GTATTTACTCACGAATGTATCGCTTTCCACTGAAAAGTTGCAAGAAAACC CTTTCAGGGAGAATCACAACTGCGACCTCACTACTTGAGGAGGTTAACGA GGGAACTACTATAGACCGCCGGGGCTTGGGCGCCCATATTATCATGGATA AATCTAGTTTTGAAATTGGTATCAAGAAGGGATAATACGTCGTTGCCTAA TTTCACACATGTTCCAGCCCTGTTGGGATTTTAAACAACACTGACGTTGA AAATGGAAATGATTTTCGACATGCAGATGTAGGTGGTTCGAGATGAATTT ACCGCAACCCAAGTTTTTGTTGAGTTTCAGCCCCCTGAAACCTAGTTTCA ATGTACGCGTGCGCGTTATCCGGAACCAGCGATATTATTGGGTCACTGCG CGACGAAAAGTGTCAGCCTATCGCTGCCGACTTCACCCGACGCGCTTTGA TTGTCCTAAATAACAACTGCTGTGTTGACTTTCTTCCACTGAACACTTAT CGTTTACATGGAGACAAAATGCAGGCGCTTTGGGGCCATTCTTCGTTTGT AGCAGGTGGCCACTACAGCCTTCTTGACGAACCTCCAGTCCACCGGTCCC CCTGCCAGCCACTCTACAGCACGACAAAAGATAGACTTAACCACTACTTC AGTAGATCACACAATCTTGAGTCTTCGTCGTCGATATAGACGGTCTAAGT ATGTCCCGTGACCCACCGAGTCTCCTGGCGCGATTTCCAGGCGGTGGGGT AAATAAAATAAAAAAACACCGGTGGGGTAAAGTAGTGGTACCGCCTCTTG TCCATCACCATCTTCGGCGCCGTCGCCGTAGGATAATTCAGCCGAAATCG CCCATCATACCTGAATACTATTTCAAGTCTTGTCCCGAACCTGGTGAAGA CATTAGTACAAGAGGTAGCACGCGACTACGAGACTACGCACTTTGAACTG GAAAATAAATCAGTTGATGAGACTCACTGCTGAGACAAAAAACACAAAGC CACTCATCCACCGAACCGGTGCGGTGAGCGAACCAGAAACACAGAGCCAC TCATCCACCGAACCGGGGCGGTGAGCGAACCAGATGTCATGGGTTGAGTC GCAAGCTTGTGGGGGAAACAAGGTCCCTGAAATTGATCATATGGCGTGCT CGAATGGTTAGACCCGTTTAAGGATGCGCGAAGAATTCCATCGAGACTTG ATCGCAGTTGGCATTTCAACCAAGACGTTGTAGTTGTAGGCTGATAATAC TTTACAATTGGGCACTTCCACCATACTTCTCGTGCATGTTGATGACGTGC TGTTGTCTTGAGAAGACCAAGAACAGGTGGTTACACTTTTTGGAAACAAA AGGACAGGTTCTAGACGGTGGGTGTTGGGAGATGTGAAGGGCTCTTTTGG AAGAATCGATGTATAACGAAACGCCGAACGAAACGTCGAAGTAGAAACAG GACTGTAGAGAAGAAACAGGAAACAAAATGTGTTACCGGTTGAAGGACCT CCGGTATGAGGTAGATGATACAGACTATGCGTGCTTCTCAACGGCCACGC GAAACACCTGCATGTTCCTCCCCGTTTCCATGCCCCTCTACGATGGTGCA TACTGCGCAGAACGAAAGGAAGAGCTGCGCTGGAGCAGCATCATGGAGGT TCCCGTATTTCCCTACCAGGAAACTCGACGCGGAGAAGTCGTCGCACTCC GCGGCTGGCTGGCTCGAGGCGGACAAATAAATTCGCCTCTACTCCGCTCT GTCGCGGAAACTTGGACGCCTCTTACGCTGGCCTGTGCCGAGGGAGATGT CGCCCTGGTGCGTCTCCTCGTTGAGACCGGAGGTGCCCGCGCCTCCGCGA GCGTCGGCACCAAGGTCCTGGCCAGCTCTGCCCCCTTACACGTCGCCTCA CGCTACGGGCACGCTGGTGTTGCAACCGTTTTGCTGGAGCTCGGCGCTGT CGTGGACGCTCGCGACACGATAGGCATGATGCCGTTACACTACGCCGCTG GAAATGGCCACCTCAAAACGATCGAGGTGCTGCTCGGGGCGGGGGCGGGC ACCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTTC GTCGTCTGAGTCGCCCGGCGGAGCAACAGCACTCGACTTGGCGGAGATGG CGGGCTTCCACGATGCAGCAGCCCTGCTGAGAAGCCGAGCTCTAGCAAGG GATGGGGTGGCCAGGAGGAGAGCGCTAGGCTCATGGCTTGGGGCGCTCGG ATGCAAGGAGTTTCTGGGACGTTTTTTGAAGGCCGGCTACGACGACCTTC CGTTCATGGCGGCGCAGGGACTTACCGAGGCAGATCTGGATTGTGTGGGA GTTCCAAGGGATAAGCTGGGTCTAAGGAAGAAGCTGCTGGCCATGCACGA CGTCGATATGTTTTTAGACGCTACCAGTGGTGGAAGTGGTGGTAGCAGTG GTACCGAGGATGCGTCGACGGTGGAGACAGCTAGCGAGAGCGGCGAGGAA GGAAGCAGCAGCGGTGACGAAGGCGATAGTGGTGATGATGGCGATGTTGA TGGCGGATCGGACGAAGATGAAGATCGATTCGGCAGCGATGGAGATCGAG GGGAGACTAGTAGCACCGTCGACGGTAGTGATGGCGACGGCAGTAGCGGT AGCGGTGGCAGTGGTAGCGATTCAGAAAGTGACGCTTGAAAAATATCTGC GAGCGTGTTTTCCACAAATTTTACTGCATTATCATTTGCTTGCTAGTTGG TCACGGTTGAGCAACACACCACTCGCAGTAGTCGTATATCGTGAACTTAC TTGTTCGTATGGTTGATTTCTCTAGGTTGAAGGTGTGGTGTATGACGGTG GGATCCTTGAATAAGCTGCAGCTGCAGATTCCCTCGATTTCAAGCAAGAC GATTATTCAGTGAATCCCGTGAAGGGGGTTACCAGGGTAGTATCCACCGC GTGAAGAGATTAGCCAAAGGGAAGGGGGAGACGAGGGAGATTCAGTGGCC CCGAGGTTTCCATTCACGCCGAGCGCATCCACGAAGGGTGTGTTTAAGTC CGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig21:444465..450267-

>mRNA_P-littoralis_Contig21.115.1 ID=mRNA_P-littoralis_Contig21.115.1|Name=mRNA_P-littoralis_Contig21.115.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig21:444465..450267- (Pylaiella littoralis U1_48)
ATGGAGGTTCCCGTATTTCCCTACCAGGAAACTCGACGCGGAGAAGTCGT
CGCACTCCGCGGCTGGCTGGCTCGAGGCGGACAAATAAATTCGCCTCTAC
TCCGCTCTGTCGCGGAAACTTGGACGCCTCTTACGCTGGCCTGTGCCGAG
GGAGATGTCGCCCTGGTGCGTCTCCTCGTTGAGACCGGAGGTGCCCGCGC
CTCCGCGAGCGTCGGCACCAAGGTCCTGGCCAGCTCTGCCCCCTTACACG
TCGCCTCACGCTACGGGCACGCTGGTGTTGCAACCGTTTTGCTGGAGCTC
GGCGCTGTCGTGGACGCTCGCGACACGATAGGCATGATGCCGTTACACTA
CGCCGCTGGAAATGGCCACCTCAAAACGATCGAGGTGCTGCTCGGGGCGG
GGGCGGGCACCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCCTTTCGTCGTCTGAGTCGCCCGGCGGAGCAACAGCACTCGACTTGGC
GGAGATGGCGGGCTTCCACGATGCAGCAGCCCTGCTGAGAAGCCGAGCTC
TAGCAAGGGATGGGGTGGCCAGGAGGAGAGCGCTAGGCTCATGGCTTGGG
GCGCTCGGATGCAAGGAGTTTCTGGGACGTTTTTTGAAGGCCGGCTACGA
CGACCTTCCGTTCATGGCGGCGCAGGGACTTACCGAGGCAGATCTGGATT
GTGTGGGAGTTCCAAGGGATAAGCTGGGTCTAAGGAAGAAGCTGCTGGCC
ATGCACGACGTCGATATGTTTTTAGACGCTACCAGTGGTGGAAGTGGTGG
TAGCAGTGGTACCGAGGATGCGTCGACGGTGGAGACAGCTAGCGAGAGCG
GCGAGGAAGGAAGCAGCAGCGGTGACGAAGGCGATAGTGGTGATGATGGC
GATGTTGATGGCGGATCGGACGAAGATGAAGATCGATTCGGCAGCGATGG
AGATCGAGGGGAGACTAGTAGCACCGTCGACGGTAGTGATGGCGACGGCA
GTAGCGGTAGCGGTGGCAGTGGTAGCGATTCAGAAAGTGACGCTTGA
back to top