mRNA_P-littoralis_Contig209.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig209.43.1
Unique NamemRNA_P-littoralis_Contig209.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 4.080e-100
Identity = 203/312 (65.06%), Postives = 223/312 (71.47%), Query Frame = 3
Query:  765 VLLNGVNCRICAGDMVAVI------------------------------GASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKAAMATT 1610
            VL  GVNCR CAGDMVAVI                              GASGAGKSTFLDLLAGKK  GECAGQILLT++     G+    R G                       R +VYVTQDDFHVAELTVRE+LAFAVRL MGG +   RDR ARVE+LLDVLGL +C++VRVGNPLERGISGGEARRLSMGIGVA LESVRLLLLDEPTTGLDSSSA+EVMLLAR+LAS  DRR VVASVHQPS EMFS FDKVLV+VGGRQA+FGSASKAA +LSRP+LGI+P  GQN AEFIL AAKA + ++
Sbjct:  163 VLTQGVNCRFCAGDMVAVIVSLSHAWRSAVGGRLGRRQAACMKTAAQQAGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGRWRRGGKGQG-------------------RPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRE---RDRRARVEELLDVLGLRACADVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSS 452          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: D8LSM2_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM2_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 1.280e-81
Identity = 163/217 (75.12%), Postives = 172/217 (79.26%), Query Frame = 3
Query:  807 MVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKV 1457
            MVAVIGASGAGKSTFLDLLAGKK  GECAGQILLT+        SGG         XXXXXX            R +VYVTQDDFHVAELTVRE+LAFAVRL MGG +   RDR ARVE+LLDVLGL +C+EVRVGNPLERGISGGEARRLSMGIGVA LESVRLLLLDEPTTGLDSSSA+EVMLLAR+LAS  DRR VVASVHQPS EMFS FDKV
Sbjct:    1 MVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQ--------SGGXXX------XXXXXXIGRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRE---RDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKV 200          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.890e-42
Identity = 107/280 (38.21%), Postives = 159/280 (56.79%), Query Frame = 3
Query:  768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKAAMAT 1607
            LL   + R+  G+M A++G SGAGK+T LD+LAG+K  G   G++     + + S                                +   YVTQD+ H+   TVRETL FA  L +  E V    RE  V+D+L +LGL+S ++V VG+ L +GISGG+ARRL++G+ + +L    ++ LDEPTTGLDS+ + EVM   R LA+    R V  ++HQPS E+F+ FDK++++  G Q YFG+  +A    S P L    ++G NPAEF++ A+  ++ T
Sbjct:  677 LLRKASGRVNPGEMCALMGGSGAGKTTLLDVLAGRKTAGLIEGEVFFNGKAGMPS-------------------------------PKLCSYVTQDNVHIGCFTVRETLHFAALLRIK-EGVRPAQREKMVDDVLGMLGLDSVADVMVGDSLRKGISGGQARRLTIGVEIINLPG--MIFLDEPTTGLDSNISYEVMAAVRNLAN--QNRTVCCTIHQPSIEVFALFDKLILMAKGEQVYFGATHEAVKYFSSPALDFAFSKGVNPAEFVMSASSGSILT 920          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: W7TH06_9STRA (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH06_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.330e-39
Identity = 109/281 (38.79%), Postives = 151/281 (53.74%), Query Frame = 3
Query:  768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKAAMATT 1610
            +L GV+  +  G M A++G SGAGKST LDLLA +K  G   G+  +   +   S                                +   YVTQD+ H++  TVRETL FA  L +  E +    R  R ED++ +LGLE  ++V VGN L +GISGG+ARRLS+G+ +  L  V  L LDEPTTGLDS  + EVM   R +A+    R VV ++H PS  ++  FD +L+L  GRQ YFGSA  A +  S   LG     G+NPA+F++ A +  +  +
Sbjct:  664 ILKGVSGHVFPGQMCALMGGSGAGKSTLLDLLAHRKTGGFITGEYYIGGQAEKPSS-------------------------------KWCSYVTQDNVHISLFTVRETLEFAALLRLK-EGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKGISGGQARRLSIGVEIMHLPDV--LFLDEPTTGLDSQISHEVMSSVRNIAN--HNRTVVCTIHSPSKAVYELFDSLLLLALGRQTYFGSAEAAPTYFSLLTLGWCMPIGKNPADFLMEANQGLLVAS 908          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 9.790e-36
Identity = 115/279 (41.22%), Postives = 154/279 (55.20%), Query Frame = 3
Query:  768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKIN--GECAGQILLTRASTLSSGL-SGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLV-GGRQAYFGSASKAASLLSRPDLGILPARG----QNPAEFIL 1580
            +L GV   +  G M+A++G SG+GK+T LDLL G+K    G   G I++        G+ S GS +G                         + YV QD+ H A LTVR+TL FA +L M    VT  DRE RV  ++ +LGLE   E  VG+   RGISGGEA+RLS+ +   DL    LLLLDEPT+GLD+++A EV+   R LA  +  R V+ S+HQPS EMF   D  L+L  GG  AYFG A++A +  +   L   P+      QNPA+F+L
Sbjct:  682 ILRGVCGVVAPGQMMAIMGPSGSGKTTLLDLLGGRKTRSVGRQEGDIVVDGVFGREGGVVSRGSGVG------------------------GSAYVMQDNVHHASLTVRQTLQFAAKLRMCNT-VTAEDREKRVAAMVTMLGLEGVLETTVGDESNRGISGGEAKRLSVAVEAIDLPG--LLLLDEPTSGLDATTALEVLTAVRGLA--DLGRTVILSLHQPSGEMFELLDVCLLLARGGYPAYFGRANRAMAYFASVGLTPPPSSASVTDQNPADFLL 931          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A0J0XT02_9TREE (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XT02_9TREE)

HSP 1 Score: 153 bits (386), Expect = 1.200e-35
Identity = 99/271 (36.53%), Postives = 155/271 (57.20%), Query Frame = 3
Query:  768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFIL 1580
            L++ V+ ++  G M+A++G SGAGKST LD+++ +K   E  G I L      ++ +S                               + +V QDD H   LTVRET+ FA RL   G+  T  +   RV+D++  LGL+SC+ +++G P++RGISGG+ RR+++G G+      R+L LDEPT+GLDS+SA EV+   RR+A  E    V+A++H PS +    FD+++VL  GR A+ G+ ++AA+  +  D+G      QNPA+ +L
Sbjct:   23 LVDNVSVKVAQGQMLAILGPSGAGKSTLLDIMSFRKKAME-GGSIRLNGTPLTATTMS-----------------------------EVSSFVEQDDQHYGVLTVRETIGFASRLTNTGQ--TRAETRQRVDDIVHALGLQSCANLKIGTPIQRGISGGQKRRVTVGTGLVTYP--RILFLDEPTSGLDSASAREVVASIRRIAQAEGI-IVIATIHSPSVDTLQLFDQMMVLAKGRTAFRGTMAEAAARCT--DIGYPMPPFQNPADHLL 256          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A8E2B3I6_9APHY (Uncharacterized protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2B3I6_9APHY)

HSP 1 Score: 154 bits (389), Expect = 2.920e-35
Identity = 107/278 (38.49%), Postives = 157/278 (56.47%), Query Frame = 3
Query:  765 VLLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLA-SPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSA--SKAASLLSRPDLGILPARGQNPAEFILRAA 1589
            V+L+ VN  +  G ++AV+G SGAGK+T +++LAGK+ +GE  G +    +S     LS   R+G                           +V Q D     LTV E L FA RL +  E V+D ++ ARV+D+L+ LG+    +VR+G+  +RGISGGE RR+S+G+ +     V  L+LDEPT+GLDS SA++V  +   LA  PE+  AV+AS+HQPS +++  FD+VL+L  GR  Y G    + A  L +R   GI    G N A+++L  A
Sbjct:  386 VVLDSVNGHVAPGQIMAVLGPSGAGKTTLIEILAGKRKSGETVGNVSFPSSSDSGVSLSRAPRIG---------------------------FVPQQDVLPPTLTVHEALLFAARLRLP-ESVSDSEKRARVDDVLERLGIARIRDVRIGDGEKRGISGGEMRRVSIGLELVAQPDV--LILDEPTSGLDSVSAAKVAGVLHALAHDPENPTAVIASIHQPSSQLYQSFDQVLLLSHGRSLYCGPGGFAPATHLSAR---GIPYQDGYNVADYLLDVA 630          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A5J9V9M3_9POAL (ABC transporter domain-containing protein n=4 Tax=PACMAD clade TaxID=147370 RepID=A0A5J9V9M3_9POAL)

HSP 1 Score: 149 bits (377), Expect = 4.480e-34
Identity = 106/278 (38.13%), Postives = 151/278 (54.32%), Query Frame = 3
Query:  768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGK-KINGECAGQILLT-RASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKA 1595
            +L G+      G + A++G SG+GKST LD LAG+   N   +G +LL  R + LS G                                AA YVTQDD  +  LTVRET++++ RL +  +++   +++A VE  +  +GL+ C++  +GN   RGISGGE RR+S+ + +  L   RLL LDEPT+GLDS+SA  V    R LA   D R V+ASVHQPS E+F  FD + +L GG+  YFG AS+A    ++      P R  NP++  LR   +
Sbjct:   87 VLQGLTGHAEPGTITALMGPSGSGKSTLLDALAGRLAANAFLSGTVLLNGRKANLSFG--------------------------------AAAYVTQDDTLIGTLTVRETISYSARLRLP-DNMPREEKQALVEGTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEI--LMRPRLLFLDEPTSGLDSASAFFVTQTLRGLA--RDGRTVIASVHQPSSEVFELFDSLYLLSGGKTVYFGKASEACEFFAQAGFPCPPLR--NPSDHFLRCVNS 325          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A2T7C553_9POAL (ABC transporter domain-containing protein n=17 Tax=Panicoideae TaxID=147369 RepID=A0A2T7C553_9POAL)

HSP 1 Score: 149 bits (376), Expect = 5.840e-34
Identity = 109/274 (39.78%), Postives = 150/274 (54.74%), Query Frame = 3
Query:  768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGK-KINGECAGQILLT-RASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILR 1583
            +L G+      G + A++G SG+GKST LD LAG+   N   +G ILL  R + LS G                                AA YVTQDD  +  LTVRET++++ RL +  + +   +++A VE  +  +GL+ C++  VGN   RGISGGE RR+S+ + +  L   RLL LDEPT+GLDS+SA  V    R LA   D R V+ASVHQPS E+F+ FD + +L GG+  YFG AS+A    S+      P R  NP++  LR
Sbjct:   83 VLQGLTGHAEPGTITALMGPSGSGKSTLLDALAGRLAANAFLSGTILLNGRKANLSFG--------------------------------AAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPREEKQALVEGTIIEMGLQDCADTVVGNWHLRGISGGEKRRVSIALEI--LMRPRLLFLDEPTSGLDSASAFFVTQTLRGLA--RDGRTVIASVHQPSSEVFTLFDCLYLLSGGKTVYFGKASEACEFFSQAGFPCPPMR--NPSDHFLR 317          
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A452YI65_AEGTS (ABC transporter domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YI65_AEGTS)

HSP 1 Score: 149 bits (375), Expect = 7.040e-34
Identity = 104/267 (38.95%), Postives = 147/267 (55.06%), Query Frame = 3
Query:  801 GDMVAVIGASGAGKSTFLDLLAGK-KINGECAGQILLT-RASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKA 1595
            G + A++G SG+GKST LD LAG+   N   +G ILL  R + LS G                                AA YVTQDD  +  LTVRET++++ RL +  +++   ++ A VE  +  +GL+ C++  +GN   RG+SGGE RR+S+ + +  L   RLL LDEPT+GLDS+SA  V    R LA   D R V+AS+HQPS E+F  FD++ +L GG+  YFG AS+A    ++      P R  NP++  LR   A
Sbjct:   42 GTITALMGPSGSGKSTLLDALAGRLAANAFLSGTILLNGRKANLSFG--------------------------------AAAYVTQDDNLIGTLTVRETISYSARLRLP-DNMPMEEKRALVEGTIVEMGLQDCADTVIGNWHLRGVSGGEKRRVSIALEI--LMRPRLLFLDEPTSGLDSASAFFVTQTLRGLA--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEACEFFAQAGFPCPPLR--NPSDHFLRCINA 269          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK8_9PHAE4.080e-10065.06ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSM2_ECTSI1.280e-8175.12ABC transporter domain-containing protein n=1 Tax=... [more]
W7TLH8_9STRA4.890e-4238.21Abc transporter g family member 29 n=2 Tax=Monodop... [more]
W7TH06_9STRA2.330e-3938.79Atp-binding cassette superfamily n=1 Tax=Nannochlo... [more]
D8LSM1_ECTSI9.790e-3641.22ABC transporter domain-containing protein n=1 Tax=... [more]
A0A0J0XT02_9TREE1.200e-3536.53p-loop containing nucleoside triphosphate hydrolas... [more]
A0A8E2B3I6_9APHY2.920e-3538.49Uncharacterized protein n=1 Tax=Obba rivulosa TaxI... [more]
A0A5J9V9M3_9POAL4.480e-3438.13ABC transporter domain-containing protein n=4 Tax=... [more]
A0A2T7C553_9POAL5.840e-3439.78ABC transporter domain-containing protein n=17 Tax... [more]
A0A452YI65_AEGTS7.040e-3438.95ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig209contigP-littoralis_Contig209:260085..264605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSM2
PFAMsABC_tran
Model size2079
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.25e-83
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
Cds size1953
COG categoryV
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig209.43.1prot_P-littoralis_Contig209.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig209 260210..264605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.3422868-UTR-P-littoralis_Contig209:260084..2602091680790015.3422868-UTR-P-littoralis_Contig209:260084..260209Pylaiella littoralis U1_48UTRP-littoralis_Contig209 260085..260209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.3604822-CDS-P-littoralis_Contig209:260209..2605931680790015.3604822-CDS-P-littoralis_Contig209:260209..260593Pylaiella littoralis U1_48CDSP-littoralis_Contig209 260210..260593 +
1680790015.3709683-CDS-P-littoralis_Contig209:260818..2611301680790015.3709683-CDS-P-littoralis_Contig209:260818..261130Pylaiella littoralis U1_48CDSP-littoralis_Contig209 260819..261130 +
1680790015.381872-CDS-P-littoralis_Contig209:261966..2622801680790015.381872-CDS-P-littoralis_Contig209:261966..262280Pylaiella littoralis U1_48CDSP-littoralis_Contig209 261967..262280 +
1680790015.3943713-CDS-P-littoralis_Contig209:262818..2630081680790015.3943713-CDS-P-littoralis_Contig209:262818..263008Pylaiella littoralis U1_48CDSP-littoralis_Contig209 262819..263008 +
1680790015.403774-CDS-P-littoralis_Contig209:263411..2635401680790015.403774-CDS-P-littoralis_Contig209:263411..263540Pylaiella littoralis U1_48CDSP-littoralis_Contig209 263412..263540 +
1680790015.4139235-CDS-P-littoralis_Contig209:263981..2646051680790015.4139235-CDS-P-littoralis_Contig209:263981..264605Pylaiella littoralis U1_48CDSP-littoralis_Contig209 263982..264605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig209.43.1

>prot_P-littoralis_Contig209.43.1 ID=prot_P-littoralis_Contig209.43.1|Name=mRNA_P-littoralis_Contig209.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=651bp
MSRRAYSRSNAAGSVAGGGATAASAEAGAAAAAAAEQRQRRQRRRAIRVA
VAAAQESLFGAPQPRLAGEDDCSSLSSSPSVASIRELASNSGASGNISGA
SSNNNLGVDIGGGNYGGSTESLGVADSAQQQQQQQQHRTEQQERMLRRSF
AQQREAMQQEGYAVPQDGEEVICEVTDLYYGVKVKPRKKSTTAAAAAATT
TGAAGRERRERRRVLLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKK
INGECAGQILLTRASTLSSGLSGGSRLGGGGGGGGGGGGEGGGRRRNNKG
GRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLD
VLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTT
GLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGG
RQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKAAMATTATITT
TAAAVAAAADPADAAATAAAAAAATASAAAAAFATAAGGGGGGGGGNGGG
DGSLRGGGRGEECYSPGGASCSSLSYSYSCSSFASSSTDLSSFRAAAAAA
AAPLIGIDPSAALVGLGSAGGMMGESFLYDTEDGDYVEHGGGTRGRAVTL
G
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mRNA from alignment at P-littoralis_Contig209:260085..264605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig209.43.1 ID=mRNA_P-littoralis_Contig209.43.1|Name=mRNA_P-littoralis_Contig209.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4521bp|location=Sequence derived from alignment at P-littoralis_Contig209:260085..264605+ (Pylaiella littoralis U1_48)
GGCCTACCTGCCTGCTCCCTCCTGTATGATACATGTCGCACGCTGTGCGC AGAGGTATACTCTCACGTTTACGCCCTCCTCTGTGTCGACGCTGCTTCAG CTGAAAGGACAGAGCACATGAACGCATGAGCCGGAGAGCGTACTCCAGAA GCAACGCAGCAGGCTCAGTAGCAGGAGGAGGAGCGACCGCAGCCTCAGCA GAAGCAGGAGCAGCAGCAGCGGCAGCAGCAGAGCAACGACAACGGCGACA GCGACGAAGGGCGATCAGGGTCGCGGTTGCCGCGGCCCAGGAGTCGCTGT TCGGTGCGCCGCAGCCCCGACTTGCGGGGGAAGACGACTGCTCGTCGTTG TCCTCTTCTCCCTCAGTTGCTTCCATCCGAGAGCTTGCGAGCAACAGCGG GGCGTCTGGTAATATCAGCGGTGCGTCTTCGAATAACAACCTCGGTGTTG ACATCGGCGGCGGCAACTACGGCGGTAGCACCGAATCTCTCGGTGTTGCT GATTCTGCTGCTGCTGCTGCTGCTATTGTCGACCGGCCGTCGGCTGCTGC TCCACCTCCACCACCGATGTCGGCTGCACGACGAGAACAACCTCAGCCGT ATCAGAGCGTTCGTGCTTTCAGCGACAGCTTTGTTTCCTCGACATCGCCA GCAGCTGATGCCGTTGCTCCGACAAGCACGGCACTCCCGCCGCCGCACCC TGGTGCTGCTGACAGGGGCAATCGGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAGCATCGGACAGAGCAGCAAGAGCGGATGCTTCGGAGATCTTTC GCTCAGCAGCGAGAGGCAATGCAGCAGGAGGGATACGCGGTACCGCAGGA CGGAGAAGAAGTGATCTGCGAGGTTACCGACCTCTACTACGGCGTCAAGG TCAAGCCGCGGAAGAAGAGCACTACGGCTGCGGCGGCGGCGGCTACTACT ACTGGTGCTGCTGGTAGGGAGCGTAGAGAGAGGAGACGGGTCCTCCTGAA TGGCGTCAACTGCCGTATTTGCGCTGGAGACATGGTGGCCGTTATCGTGA GTTTGTATATATCATGAAAGGGCATATATAGCGCGTTTCACATGGATTAT GCTCACGACCACCTCCCAGGTTCTCATATCAAGTGCCCGGTTGCCTCTGG TATGAAAAAGGTTGGTGCTCCAAGAGAAACACGGCTGCTGTGTCGGAAAG TACGGTGCGCGAGTAACATTTGACACGCGTGTGATTGCGGCCACGAAGCA GCCATCAAGGATTTCCGGGTGTTTTTTTTTTTAATATAGCACCCCCATCG CGCGAACGCGCGCTCCTTTTGCAACAGATGCGCATTAGTCATTCTGAAAT CAGACGCTACTGGGGCATCTCTAGTATTTCTGAACTCGTTGTACTGACCT GCTCCCAACTGCACCATCTAAACAAACTTAAACTTCAGTTTGGATGGATG CGATGGATCGGATTGAAGTTTATCGATGCACTACTCGTGTGTGTTTTGGG AACCAGACATCACTGCTGTATTCATAGCCGGGTACCTTGAATGCTGCGCC GCGTTTCCTGCGTGTTCTTCAATCCTGCTGTAGTTCTGGTTCCCTATGAT ATCGTACGGGGCAAACTCAGCTCCTTGCCTTTTTTTGTACATTTTCGTAC CAGGTAATTTGTAATTTGTAGGATGCTGCTGCGTGAACTGCTGTGTGATT CTCTCTGACGATGGAATAAGCGATCCTGCGCTCCTGCCTCTTGTATGATA TGACACTTTTGTACGCACTTCGTTGATATTTTACAGCGGTGTCGTATTCA TTGTTTTGTGTCACACGATCGACTACTTTTTGCCATTTTGGAATGAAACT TTAACTTTTACGGCGTCGTCCTCGCCAAACAGGGAGCCTCCGGTGCGGGC AAGTCGACCTTCCTTGACCTTCTGGCCGGAAAAAAAATAAACGGAGAGTG CGCCGGGCAGATTCTCCTCACCCGAGCATCGACGTTGTCGTCCGGCCTCA GCGGCGGTAGTCGTCTGGGGGGAGGGGGGGGAGGCGGAGGTGGAGGTGGA GGGGAAGGTGGAGGTAGGAGACGGAACAACAAGGGCGGCCGAGCAGCGGT GTACGTTACCCAGGACGACTTCCACGTGGCCGAGCTGACGGTGCGGGAGA CCCTCGCCTTTGCCGTTCGCCTGGGCATGGGAGGGGAAGACGTAACGTGA GTTGTGTTGGTTGGGTGGGGACAAGACACATGCTTTTCGAAGTATGATAA CTTCAGAAAAATGTCCCGTGTTAGTATAGACGTATGGTTATCACCAGTAC AAAGTGCGAAGTGCCATTTGATAGGTCTATCGATGTATACGAAGCTAATG CAACTAAAGACGGTTGATGTAAAACAAAAATAAAATATCCTGTGTTGACC CTCCTCCTGCGTGACCTCGGCTGATGCGGCCGCATCGAGCGAAAGATCCT CGACTGGCGTCGAGAATAAATGGGATGACAACACATGCAAACACGAACAC ACACACGCACTCACTCACTCACGCCCACATACACTACATACGGGTGAAGT GGGTGCGTGTGGTGTGTCCCGTTCTACTACTGCTGTTGGCTCGTGTTGTC TGTTTCCTCACACCGCTTCAAAACGCGTGTGTCCGTGTCCGTGTCCGTGT CCGTGTGCGTGTGCTGTTTTGCCTCCCTCCCCCCCCTTTCCGAAAAACAA CACAACATAAATTCCACGGAACAAAATGAAACAGCGACAGAGATCGCGAA GCCCGCGTCGAGGACCTCCTCGACGTGCTTGGGCTCGAGTCCTGCAGCGA AGTGAGGGTGGGGAACCCTCTAGAGCGGGGCATCAGCGGAGGGGAAGCGA GGAGGCTGTCGATGGGCATCGGCGTAGCGGATCTGGAGAGCGTGCGGCTC CTCCTTCTCGACGAGCCCACCACGGTGTGTTAGCTGGGGTTTGATGTTTT TGTCATTGCTGCTCCTGCTGCTGCTGCTCGAGGTGGTGGTGGTGGTGGTG GCGGTTGGCTGTTCACTGCGAATTGCTGCTGTTGATGTGATTGGTTTTGG AAGCCGGGTGTTGGTACTGTCGTCGAAGGACGTTCCCGCTTCTGTTGGGA GTGGGTTGGGTGGCTAGTTGTTGTGCTTTTTGTTTGGCGTTGTCATGTTC GTCGTCGTCGTCGCGTTCGTCGGTTTTTTGCGGTGTGTCTTCGATGGTTT TTACACGGGGCTTTATTCGCCTGCTGTTGCTTGCTGTCTTGTCGTATCGT GTCGGTTGCGGTTGCGGCATCCCCACCCCTCACACGTATGCACGACGACG CGATGGCAACGGTGACGGCGACGGCAGGGTCTGGATTCGTCTTCGGCATC GGAGGTGATGCTTCTCGCCAGGAGACTCGCGTCCCCGGAGGATAGGCGGG CCGTGGTTGCCTCCGTGCACCAGCCGTCTCCGGAAATGTTCTCGTTCTTC GACAAGGTGAGGCGATAGATTTGTGTATTCCACTATCATAGATATTGGGG GTGTGGGTGGAATAGGAAGTGAGAGGGTCAGGGGAGAGCGGGACGACGTA CTCGTTTGTTGGCTGCCTTAAGTCATTTGACCACTGACCATTCCACGCAC CGCTTTCGAACAGGCGCAGGAGAAAGAGGGAGGGGGGGAGGTGACCAAAT TTCAACACTTTTTTTTTTTTCTGCCCAAACTGAAATATTATTTTGCGGGG TACACACCCTCTCTCCGCCGAAGAAACGGCTGTAGTTCTCCTTTGTATAT ATTGTTTTACTTCGCTCTCTGTTCATGTCTTTCTTCGTCCTTTCGCTACG ACTTCTCCCCCGGTCTCCCGCCTCTTGATATTGAATCTCTTTGGATCTCT TTGGGTCTGTCTGTGTACATTTTTGCCCCCTCCTAACACAACACCAGGTG CTGGTTTTGGTGGGCGGCCGCCAGGCGTATTTTGGTTCGGCTTCCAAAGC CGCCTCCCTCCTGTCCAGACCGGACCTCGGCATTCTCCCTGCTCGCGGTC AAAACCCCGCGGAGTTCATTCTCCGGGCCGCCAAGGCTGCGATGGCGACA ACGGCGACGATAACGACAACGGCGGCTGCCGTAGCCGCAGCCGCTGACCC AGCTGACGCCGCCGCCACCGCCGCCGCCGCCGCTGCAGCTACAGCTTCCG CTGCCGCTGCTGCTTTTGCTACCGCTGCCGGCGGCGGCGGAGGTGGTGGT GGTGGTAATGGTGGTGGTGACGGCTCACTCAGAGGAGGCGGAAGAGGAGA GGAGTGTTACTCCCCAGGGGGTGCTTCTTGTTCGAGCCTCTCTTACTCGT ACTCGTGCTCGTCGTTCGCATCTTCTTCGACCGACCTTTCTTCTTTTCGA GCGGCGGCGGCGGCGGCGGCTGCGCCCCTGATCGGCATCGACCCGTCGGC GGCGCTGGTCGGGCTCGGCAGCGCCGGCGGCATGATGGGGGAATCCTTCC TGTACGACACGGAGGACGGTGACTACGTGGAGCATGGAGGGGGGACAAGG GGAAGAGCAGTAACATTAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig209:260085..264605+

>mRNA_P-littoralis_Contig209.43.1 ID=mRNA_P-littoralis_Contig209.43.1|Name=mRNA_P-littoralis_Contig209.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1953bp|location=Sequence derived from alignment at P-littoralis_Contig209:260085..264605+ (Pylaiella littoralis U1_48)
ATGAGCCGGAGAGCGTACTCCAGAAGCAACGCAGCAGGCTCAGTAGCAGG
AGGAGGAGCGACCGCAGCCTCAGCAGAAGCAGGAGCAGCAGCAGCGGCAG
CAGCAGAGCAACGACAACGGCGACAGCGACGAAGGGCGATCAGGGTCGCG
GTTGCCGCGGCCCAGGAGTCGCTGTTCGGTGCGCCGCAGCCCCGACTTGC
GGGGGAAGACGACTGCTCGTCGTTGTCCTCTTCTCCCTCAGTTGCTTCCA
TCCGAGAGCTTGCGAGCAACAGCGGGGCGTCTGGTAATATCAGCGGTGCG
TCTTCGAATAACAACCTCGGTGTTGACATCGGCGGCGGCAACTACGGCGG
TAGCACCGAATCTCTCGGTGTTGCTGATTCTGCTCAGCAGCAGCAGCAGC
AGCAGCAGCATCGGACAGAGCAGCAAGAGCGGATGCTTCGGAGATCTTTC
GCTCAGCAGCGAGAGGCAATGCAGCAGGAGGGATACGCGGTACCGCAGGA
CGGAGAAGAAGTGATCTGCGAGGTTACCGACCTCTACTACGGCGTCAAGG
TCAAGCCGCGGAAGAAGAGCACTACGGCTGCGGCGGCGGCGGCTACTACT
ACTGGTGCTGCTGGTAGGGAGCGTAGAGAGAGGAGACGGGTCCTCCTGAA
TGGCGTCAACTGCCGTATTTGCGCTGGAGACATGGTGGCCGTTATCGGAG
CCTCCGGTGCGGGCAAGTCGACCTTCCTTGACCTTCTGGCCGGAAAAAAA
ATAAACGGAGAGTGCGCCGGGCAGATTCTCCTCACCCGAGCATCGACGTT
GTCGTCCGGCCTCAGCGGCGGTAGTCGTCTGGGGGGAGGGGGGGGAGGCG
GAGGTGGAGGTGGAGGGGAAGGTGGAGGTAGGAGACGGAACAACAAGGGC
GGCCGAGCAGCGGTGTACGTTACCCAGGACGACTTCCACGTGGCCGAGCT
GACGGTGCGGGAGACCCTCGCCTTTGCCGTTCGCCTGGGCATGGGAGGGG
AAGACGTAACCGACAGAGATCGCGAAGCCCGCGTCGAGGACCTCCTCGAC
GTGCTTGGGCTCGAGTCCTGCAGCGAAGTGAGGGTGGGGAACCCTCTAGA
GCGGGGCATCAGCGGAGGGGAAGCGAGGAGGCTGTCGATGGGCATCGGCG
TAGCGGATCTGGAGAGCGTGCGGCTCCTCCTTCTCGACGAGCCCACCACG
GGTCTGGATTCGTCTTCGGCATCGGAGGTGATGCTTCTCGCCAGGAGACT
CGCGTCCCCGGAGGATAGGCGGGCCGTGGTTGCCTCCGTGCACCAGCCGT
CTCCGGAAATGTTCTCGTTCTTCGACAAGGTGCTGGTTTTGGTGGGCGGC
CGCCAGGCGTATTTTGGTTCGGCTTCCAAAGCCGCCTCCCTCCTGTCCAG
ACCGGACCTCGGCATTCTCCCTGCTCGCGGTCAAAACCCCGCGGAGTTCA
TTCTCCGGGCCGCCAAGGCTGCGATGGCGACAACGGCGACGATAACGACA
ACGGCGGCTGCCGTAGCCGCAGCCGCTGACCCAGCTGACGCCGCCGCCAC
CGCCGCCGCCGCCGCTGCAGCTACAGCTTCCGCTGCCGCTGCTGCTTTTG
CTACCGCTGCCGGCGGCGGCGGAGGTGGTGGTGGTGGTAATGGTGGTGGT
GACGGCTCACTCAGAGGAGGCGGAAGAGGAGAGGAGTGTTACTCCCCAGG
GGGTGCTTCTTGTTCGAGCCTCTCTTACTCGTACTCGTGCTCGTCGTTCG
CATCTTCTTCGACCGACCTTTCTTCTTTTCGAGCGGCGGCGGCGGCGGCG
GCTGCGCCCCTGATCGGCATCGACCCGTCGGCGGCGCTGGTCGGGCTCGG
CAGCGCCGGCGGCATGATGGGGGAATCCTTCCTGTACGACACGGAGGACG
GTGACTACGTGGAGCATGGAGGGGGGACAAGGGGAAGAGCAGTAACATTA
GGA
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