mRNA_P-littoralis_Contig209.43.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE) HSP 1 Score: 347 bits (891), Expect = 4.080e-100 Identity = 203/312 (65.06%), Postives = 223/312 (71.47%), Query Frame = 3
Query: 765 VLLNGVNCRICAGDMVAVI------------------------------GASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKAAMATT 1610
VL GVNCR CAGDMVAVI GASGAGKSTFLDLLAGKK GECAGQILLT++ G+ R G R +VYVTQDDFHVAELTVRE+LAFAVRL MGG + RDR ARVE+LLDVLGL +C++VRVGNPLERGISGGEARRLSMGIGVA LESVRLLLLDEPTTGLDSSSA+EVMLLAR+LAS DRR VVASVHQPS EMFS FDKVLV+VGGRQA+FGSASKAA +LSRP+LGI+P GQN AEFIL AAKA + ++
Sbjct: 163 VLTQGVNCRFCAGDMVAVIVSLSHAWRSAVGGRLGRRQAACMKTAAQQAGASGAGKSTFLDLLAGKKKEGECAGQILLTQSGGXXXGIGRWRRGGKGQG-------------------RPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRE---RDRRARVEELLDVLGLRACADVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSASKAADILSRPELGIMPTPGQNSAEFILLAAKAVLQSS 452
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: D8LSM2_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM2_ECTSI) HSP 1 Score: 268 bits (684), Expect = 1.280e-81 Identity = 163/217 (75.12%), Postives = 172/217 (79.26%), Query Frame = 3
Query: 807 MVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKV 1457
MVAVIGASGAGKSTFLDLLAGKK GECAGQILLT+ SGG XXXXXX R +VYVTQDDFHVAELTVRE+LAFAVRL MGG + RDR ARVE+LLDVLGL +C+EVRVGNPLERGISGGEARRLSMGIGVA LESVRLLLLDEPTTGLDSSSA+EVMLLAR+LAS DRR VVASVHQPS EMFS FDKV
Sbjct: 1 MVAVIGASGAGKSTFLDLLAGKKKEGECAGQILLTQ--------SGGXXX------XXXXXXIGRWRRGGKGRGRPSVYVTQDDFHVAELTVRESLAFAVRLSMGGRE---RDRRARVEELLDVLGLRACAEVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLASRRDRRVVVASVHQPSAEMFSLFDKV 200
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA) HSP 1 Score: 175 bits (444), Expect = 4.890e-42 Identity = 107/280 (38.21%), Postives = 159/280 (56.79%), Query Frame = 3
Query: 768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKAAMAT 1607
LL + R+ G+M A++G SGAGK+T LD+LAG+K G G++ + + S + YVTQD+ H+ TVRETL FA L + E V RE V+D+L +LGL+S ++V VG+ L +GISGG+ARRL++G+ + +L ++ LDEPTTGLDS+ + EVM R LA+ R V ++HQPS E+F+ FDK++++ G Q YFG+ +A S P L ++G NPAEF++ A+ ++ T
Sbjct: 677 LLRKASGRVNPGEMCALMGGSGAGKTTLLDVLAGRKTAGLIEGEVFFNGKAGMPS-------------------------------PKLCSYVTQDNVHIGCFTVRETLHFAALLRIK-EGVRPAQREKMVDDVLGMLGLDSVADVMVGDSLRKGISGGQARRLTIGVEIINLPG--MIFLDEPTTGLDSNISYEVMAAVRNLAN--QNRTVCCTIHQPSIEVFALFDKLILMAKGEQVYFGATHEAVKYFSSPALDFAFSKGVNPAEFVMSASSGSILT 920
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: W7TH06_9STRA (Atp-binding cassette superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH06_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.330e-39 Identity = 109/281 (38.79%), Postives = 151/281 (53.74%), Query Frame = 3
Query: 768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKAAMATT 1610
+L GV+ + G M A++G SGAGKST LDLLA +K G G+ + + S + YVTQD+ H++ TVRETL FA L + E + R R ED++ +LGLE ++V VGN L +GISGG+ARRLS+G+ + L V L LDEPTTGLDS + EVM R +A+ R VV ++H PS ++ FD +L+L GRQ YFGSA A + S LG G+NPA+F++ A + + +
Sbjct: 664 ILKGVSGHVFPGQMCALMGGSGAGKSTLLDLLAHRKTGGFITGEYYIGGQAEKPSS-------------------------------KWCSYVTQDNVHISLFTVRETLEFAALLRLK-EGIPVEKRRERAEDVMKMLGLEDVADVPVGNALVKGISGGQARRLSIGVEIMHLPDV--LFLDEPTTGLDSQISHEVMSSVRNIAN--HNRTVVCTIHSPSKAVYELFDSLLLLALGRQTYFGSAEAAPTYFSLLTLGWCMPIGKNPADFLMEANQGLLVAS 908
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: D8LSM1_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM1_ECTSI) HSP 1 Score: 156 bits (394), Expect = 9.790e-36 Identity = 115/279 (41.22%), Postives = 154/279 (55.20%), Query Frame = 3
Query: 768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKIN--GECAGQILLTRASTLSSGL-SGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLV-GGRQAYFGSASKAASLLSRPDLGILPARG----QNPAEFIL 1580
+L GV + G M+A++G SG+GK+T LDLL G+K G G I++ G+ S GS +G + YV QD+ H A LTVR+TL FA +L M VT DRE RV ++ +LGLE E VG+ RGISGGEA+RLS+ + DL LLLLDEPT+GLD+++A EV+ R LA + R V+ S+HQPS EMF D L+L GG AYFG A++A + + L P+ QNPA+F+L
Sbjct: 682 ILRGVCGVVAPGQMMAIMGPSGSGKTTLLDLLGGRKTRSVGRQEGDIVVDGVFGREGGVVSRGSGVG------------------------GSAYVMQDNVHHASLTVRQTLQFAAKLRMCNT-VTAEDREKRVAAMVTMLGLEGVLETTVGDESNRGISGGEAKRLSVAVEAIDLPG--LLLLDEPTSGLDATTALEVLTAVRGLA--DLGRTVILSLHQPSGEMFELLDVCLLLARGGYPAYFGRANRAMAYFASVGLTPPPSSASVTDQNPADFLL 931
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A0J0XT02_9TREE (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XT02_9TREE) HSP 1 Score: 153 bits (386), Expect = 1.200e-35 Identity = 99/271 (36.53%), Postives = 155/271 (57.20%), Query Frame = 3
Query: 768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFIL 1580
L++ V+ ++ G M+A++G SGAGKST LD+++ +K E G I L ++ +S + +V QDD H LTVRET+ FA RL G+ T + RV+D++ LGL+SC+ +++G P++RGISGG+ RR+++G G+ R+L LDEPT+GLDS+SA EV+ RR+A E V+A++H PS + FD+++VL GR A+ G+ ++AA+ + D+G QNPA+ +L
Sbjct: 23 LVDNVSVKVAQGQMLAILGPSGAGKSTLLDIMSFRKKAME-GGSIRLNGTPLTATTMS-----------------------------EVSSFVEQDDQHYGVLTVRETIGFASRLTNTGQ--TRAETRQRVDDIVHALGLQSCANLKIGTPIQRGISGGQKRRVTVGTGLVTYP--RILFLDEPTSGLDSASAREVVASIRRIAQAEGI-IVIATIHSPSVDTLQLFDQMMVLAKGRTAFRGTMAEAAARCT--DIGYPMPPFQNPADHLL 256
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A8E2B3I6_9APHY (Uncharacterized protein n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2B3I6_9APHY) HSP 1 Score: 154 bits (389), Expect = 2.920e-35 Identity = 107/278 (38.49%), Postives = 157/278 (56.47%), Query Frame = 3
Query: 765 VLLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGKKINGECAGQILLTRASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLA-SPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSA--SKAASLLSRPDLGILPARGQNPAEFILRAA 1589
V+L+ VN + G ++AV+G SGAGK+T +++LAGK+ +GE G + +S LS R+G +V Q D LTV E L FA RL + E V+D ++ ARV+D+L+ LG+ +VR+G+ +RGISGGE RR+S+G+ + V L+LDEPT+GLDS SA++V + LA PE+ AV+AS+HQPS +++ FD+VL+L GR Y G + A L +R GI G N A+++L A
Sbjct: 386 VVLDSVNGHVAPGQIMAVLGPSGAGKTTLIEILAGKRKSGETVGNVSFPSSSDSGVSLSRAPRIG---------------------------FVPQQDVLPPTLTVHEALLFAARLRLP-ESVSDSEKRARVDDVLERLGIARIRDVRIGDGEKRGISGGEMRRVSIGLELVAQPDV--LILDEPTSGLDSVSAAKVAGVLHALAHDPENPTAVIASIHQPSSQLYQSFDQVLLLSHGRSLYCGPGGFAPATHLSAR---GIPYQDGYNVADYLLDVA 630
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A5J9V9M3_9POAL (ABC transporter domain-containing protein n=4 Tax=PACMAD clade TaxID=147370 RepID=A0A5J9V9M3_9POAL) HSP 1 Score: 149 bits (377), Expect = 4.480e-34 Identity = 106/278 (38.13%), Postives = 151/278 (54.32%), Query Frame = 3
Query: 768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGK-KINGECAGQILLT-RASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKA 1595
+L G+ G + A++G SG+GKST LD LAG+ N +G +LL R + LS G AA YVTQDD + LTVRET++++ RL + +++ +++A VE + +GL+ C++ +GN RGISGGE RR+S+ + + L RLL LDEPT+GLDS+SA V R LA D R V+ASVHQPS E+F FD + +L GG+ YFG AS+A ++ P R NP++ LR +
Sbjct: 87 VLQGLTGHAEPGTITALMGPSGSGKSTLLDALAGRLAANAFLSGTVLLNGRKANLSFG--------------------------------AAAYVTQDDTLIGTLTVRETISYSARLRLP-DNMPREEKQALVEGTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEI--LMRPRLLFLDEPTSGLDSASAFFVTQTLRGLA--RDGRTVIASVHQPSSEVFELFDSLYLLSGGKTVYFGKASEACEFFAQAGFPCPPLR--NPSDHFLRCVNS 325
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A2T7C553_9POAL (ABC transporter domain-containing protein n=17 Tax=Panicoideae TaxID=147369 RepID=A0A2T7C553_9POAL) HSP 1 Score: 149 bits (376), Expect = 5.840e-34 Identity = 109/274 (39.78%), Postives = 150/274 (54.74%), Query Frame = 3
Query: 768 LLNGVNCRICAGDMVAVIGASGAGKSTFLDLLAGK-KINGECAGQILLT-RASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILR 1583
+L G+ G + A++G SG+GKST LD LAG+ N +G ILL R + LS G AA YVTQDD + LTVRET++++ RL + + + +++A VE + +GL+ C++ VGN RGISGGE RR+S+ + + L RLL LDEPT+GLDS+SA V R LA D R V+ASVHQPS E+F+ FD + +L GG+ YFG AS+A S+ P R NP++ LR
Sbjct: 83 VLQGLTGHAEPGTITALMGPSGSGKSTLLDALAGRLAANAFLSGTILLNGRKANLSFG--------------------------------AAAYVTQDDNLIGTLTVRETISYSARLRLP-DKMPREEKQALVEGTIIEMGLQDCADTVVGNWHLRGISGGEKRRVSIALEI--LMRPRLLFLDEPTSGLDSASAFFVTQTLRGLA--RDGRTVIASVHQPSSEVFTLFDCLYLLSGGKTVYFGKASEACEFFSQAGFPCPPMR--NPSDHFLR 317
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Match: A0A452YI65_AEGTS (ABC transporter domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YI65_AEGTS) HSP 1 Score: 149 bits (375), Expect = 7.040e-34 Identity = 104/267 (38.95%), Postives = 147/267 (55.06%), Query Frame = 3
Query: 801 GDMVAVIGASGAGKSTFLDLLAGK-KINGECAGQILLT-RASTLSSGLSGGSRLGXXXXXXXXXXXXXXXXXXXXXXXRAAVYVTQDDFHVAELTVRETLAFAVRLGMGGEDVTDRDREARVEDLLDVLGLESCSEVRVGNPLERGISGGEARRLSMGIGVADLESVRLLLLDEPTTGLDSSSASEVMLLARRLASPEDRRAVVASVHQPSPEMFSFFDKVLVLVGGRQAYFGSASKAASLLSRPDLGILPARGQNPAEFILRAAKA 1595
G + A++G SG+GKST LD LAG+ N +G ILL R + LS G AA YVTQDD + LTVRET++++ RL + +++ ++ A VE + +GL+ C++ +GN RG+SGGE RR+S+ + + L RLL LDEPT+GLDS+SA V R LA D R V+AS+HQPS E+F FD++ +L GG+ YFG AS+A ++ P R NP++ LR A
Sbjct: 42 GTITALMGPSGSGKSTLLDALAGRLAANAFLSGTILLNGRKANLSFG--------------------------------AAAYVTQDDNLIGTLTVRETISYSARLRLP-DNMPMEEKRALVEGTIVEMGLQDCADTVIGNWHLRGVSGGEKRRVSIALEI--LMRPRLLFLDEPTSGLDSASAFFVTQTLRGLA--RDGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASEACEFFAQAGFPCPPLR--NPSDHFLRCINA 269 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig209.43.1 >prot_P-littoralis_Contig209.43.1 ID=prot_P-littoralis_Contig209.43.1|Name=mRNA_P-littoralis_Contig209.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=651bp MSRRAYSRSNAAGSVAGGGATAASAEAGAAAAAAAEQRQRRQRRRAIRVAback to top mRNA from alignment at P-littoralis_Contig209:260085..264605+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig209.43.1 ID=mRNA_P-littoralis_Contig209.43.1|Name=mRNA_P-littoralis_Contig209.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4521bp|location=Sequence derived from alignment at P-littoralis_Contig209:260085..264605+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig209:260085..264605+ >mRNA_P-littoralis_Contig209.43.1 ID=mRNA_P-littoralis_Contig209.43.1|Name=mRNA_P-littoralis_Contig209.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1953bp|location=Sequence derived from alignment at P-littoralis_Contig209:260085..264605+ (Pylaiella littoralis U1_48)back to top |