mRNA_P-littoralis_Contig204.107.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.107.1
Unique NamemRNA_P-littoralis_Contig204.107.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.220e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  100 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 255
            G GGI+DCG NAVY+QP+   P     G  + CGRC RHGH+A  CAAP+RFEG
Sbjct:  477 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCERHGHHAIDCAAPRRFEG 530
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BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.930e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  100 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 255
            G GGI+DCG NAVY+QP+   P     G  + CGRCGR+ H+A  CAAP+RFEG
Sbjct:  363 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRNDHHAIDCAAPRRFEG 416
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BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.000e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  100 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 255
            G GGI+DCG NAVY+QP+   P        + C RCGRHGH+A  CAAP+RFEG
Sbjct:  233 GVGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286
[Close]
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.220e-6
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:  100 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 255
            G GGI+DCG +AVY+QP+   P     G  + CGR      +A  CAAP+RFEG
Sbjct:  435 GVGGIYDCGSDAVYHQPESLPPPDAPMGTVHRCGRXXXXXXHAIDCAAPRRFEG 488
[Close]
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.270e-5
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:  100 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHG 213
            G GGI+DCG NAVY+QP+   P     G  + CGRCGRHG
Sbjct:  435 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRHG 474
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KYB5_9PHAE8.220e-1259.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS7_9PHAE4.930e-1157.41CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JV09_9PHAE7.000e-1157.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE8.220e-648.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LA89_9PHAE1.270e-557.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:373975..374486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size513
Hectar predicted targeting categoryother localisation
Exons1
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.7947118-CDS-P-littoralis_Contig204:373974..3744841680789996.7947118-CDS-P-littoralis_Contig204:373974..374484Pylaiella littoralis U1_48CDSP-littoralis_Contig204 373975..374484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.107.1prot_P-littoralis_Contig204.107.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 373975..374484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.107.1

>prot_P-littoralis_Contig204.107.1 ID=prot_P-littoralis_Contig204.107.1|Name=mRNA_P-littoralis_Contig204.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
GFPQNQRQRCQQQQQQPTPRACSQQSPQVKSQIGAGGIFDCGGNAVYYQP
DLPKVYTAGMAYACGRCGRHGHNATYCAAPKRFEGHCWTCGEYGHTSRFC
AVKRGHGVLLSRRVTAVHGASNTDDDGREFVAAVSPQSALPPAAGMTNVY
EQPVESEVDAGNGSSGGEDD
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mRNA from alignment at P-littoralis_Contig204:373975..374486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.107.1 ID=mRNA_P-littoralis_Contig204.107.1|Name=mRNA_P-littoralis_Contig204.107.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=512bp|location=Sequence derived from alignment at P-littoralis_Contig204:373975..374486+ (Pylaiella littoralis U1_48)
GGTTTCCCCCAGAATCAGCGGCAGCGGTGTCAGCAGCAGCAACAGCAGCC
CACACCCCGCGCCTGCTCACAGCAATCCCCCCAGGTGAAGTCGCAGATTG
GGGCCGGGGGGATTTTTGATTGCGGGGGGAATGCGGTGTACTACCAGCCG
GATTTGCCGAAGGTGTACACAGCAGGCATGGCGTATGCGTGTGGGCGGTG
CGGCAGGCACGGGCATAACGCCACATATTGCGCTGCACCGAAACGGTTCG
AGGGGCATTGCTGGACGTGCGGTGAGTACGGCCACACGTCTCGCTTTTGT
GCCGTCAAGCGAGGACATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGT
GCACGGTGCGAGTAACACTGACGACGACGGGCGAGAGTTCGTTGCGGCCG
TCTCGCCTCAGAGTGCGTTACCCCCTGCGGCAGGAATGACAAATGTTTAT
GAGCAACCAGTTGAGTCGGAGGTGGATGCAGGGAACGGCAGCAGTGGCGG
AGAGGATGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:373975..374486+

>mRNA_P-littoralis_Contig204.107.1 ID=mRNA_P-littoralis_Contig204.107.1|Name=mRNA_P-littoralis_Contig204.107.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig204:373975..374486+ (Pylaiella littoralis U1_48)
GGTTTCCCCCAGAATCAGCGGCAGCGGTGTCAGCAGCAGCAACAGCAGCC
CACACCCCGCGCCTGCTCACAGCAATCCCCCCAGGTGAAGTCGCAGATTG
GGGCCGGGGGGATTTTTGATTGCGGGGGGAATGCGGTGTACTACCAGCCG
GATTTGCCGAAGGTGTACACAGCAGGCATGGCGTATGCGTGTGGGCGGTG
CGGCAGGCACGGGCATAACGCCACATATTGCGCTGCACCGAAACGGTTCG
AGGGGCATTGCTGGACGTGCGGTGAGTACGGCCACACGTCTCGCTTTTGT
GCCGTCAAGCGAGGACATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGT
GCACGGTGCGAGTAACACTGACGACGACGGGCGAGAGTTCGTTGCGGCCG
TCTCGCCTCAGAGTGCGTTACCCCCTGCGGCAGGAATGACAAATGTTTAT
GAGCAACCAGTTGAGTCGGAGGTGGATGCAGGGAACGGCAGCAGTGGCGG
AGAGGATGAT
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