prot_P-littoralis_Contig204.107.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig204.107.1
Unique Nameprot_P-littoralis_Contig204.107.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length170
Homology
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.220e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 85
            G GGI+DCG NAVY+QP+   P     G  + CGRC RHGH+A  CAAP+RFEG
Sbjct:  477 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCERHGHHAIDCAAPRRFEG 530          
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.930e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 85
            G GGI+DCG NAVY+QP+   P     G  + CGRCGR+ H+A  CAAP+RFEG
Sbjct:  363 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRNDHHAIDCAAPRRFEG 416          
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.000e-11
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 85
            G GGI+DCG NAVY+QP+   P        + C RCGRHGH+A  CAAP+RFEG
Sbjct:  233 GVGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286          
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.330e-7
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 85
            G GGI+DCG NAVY+QP    P     G+ + CGR     H+A  CAAP+RFEG
Sbjct:  363 GVGGIYDCGSNAVYHQPKSLPPPGAPMGIVHRCGRXXXXXHHAIGCAAPRRFEG 416          
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.740e-6
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPD-LPKVYTA-GMAYACGRCGRHGHNATYCAAPKRFEG 85
            G GG++DCG NAV +QP+ LP   T  G  + CGR     H+A  CAAP+RFEG
Sbjct:  435 GVGGVYDCGSNAVSHQPESLPPPGTPMGTVHRCGRXXXXXHHAIDCAAPRRFEG 488          
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.220e-6
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 85
            G GGI+DCG +AVY+QP+   P     G  + CGR      +A  CAAP+RFEG
Sbjct:  435 GVGGIYDCGSDAVYHQPESLPPPDAPMGTVHRCGRXXXXXXHAIDCAAPRRFEG 488          
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.270e-5
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHG 71
            G GGI+DCG NAVY+QP+   P     G  + CGRCGRHG
Sbjct:  435 GVGGIYDCGSNAVYHQPESLPPPGAPMGTVHRCGRCGRHG 474          
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.420e-5
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 0
Query:   34 GAGGIFDCGGNAVYYQPDL--PKVYTAGMAYACGRCGRHGHNATYCAAPKRFEG 85
            G GG +DCG NAVY+QP+   P     G  + CGR      +A  CAAP+RFEG
Sbjct:  218 GVGGNYDCGSNAVYHQPESLPPPGAPMGTVHRCGRXXXXXXHAIDCAAPRRFEG 271          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KYB5_9PHAE8.220e-1259.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBS7_9PHAE4.930e-1157.41CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JV09_9PHAE7.000e-1157.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU47_9PHAE1.330e-751.85CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JN41_9PHAE1.740e-651.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD9_9PHAE8.220e-648.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LA89_9PHAE1.270e-557.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN1_9PHAE1.420e-548.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 86..102
e-value: 0.12
score: 17.0
coord: 63..79
e-value: 4.1
score: 7.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 87..100
score: 9.026372
NoneNo IPR availableGENE3D4.10.60.10coord: 60..108
e-value: 1.6E-7
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 61..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:373975..374484 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.107.1mRNA_P-littoralis_Contig204.107.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig204 373975..374486 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig204.107.1 ID=prot_P-littoralis_Contig204.107.1|Name=mRNA_P-littoralis_Contig204.107.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
GFPQNQRQRCQQQQQQPTPRACSQQSPQVKSQIGAGGIFDCGGNAVYYQP
DLPKVYTAGMAYACGRCGRHGHNATYCAAPKRFEGHCWTCGEYGHTSRFC
AVKRGHGVLLSRRVTAVHGASNTDDDGREFVAAVSPQSALPPAAGMTNVY
EQPVESEVDAGNGSSGGEDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf