mRNA_P-littoralis_Contig201.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig201.33.1
Unique NamemRNA_P-littoralis_Contig201.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig201.33.1 vs. uniprot
Match: A0A6H5JL72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL72_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 8.750e-47
Identity = 129/244 (52.87%), Postives = 138/244 (56.56%), Query Frame = 1 
Query:    1 EDVWDDRAILKAFDDALNTHTRKPVDEVEARKWNKHAAQEVAAQPSTAGSRLPMSAPSSPRGRTGSNKIGGPSSXXXXXXXXXXXXDRRSVDGGQSQSHNQGFQAADRRFASLLAKGNAEASSEGGRAPRTLPAGIPGPWQPVAGPSEGAQYSGATP-QDGGGQRYGYGRPGPSDPYQWGPEYSGGAHGFPYPSRGAPQHPPPHPPSGAAVAN-FEEGGPGRHGLPPPPQPPHPEAGPHAAAFQ 726
            EDVWDDRAILKAFDDALN+H+RKPVD VEARKWNKHAAQ VA QP TA  R                       XXXXXX        +      S   +QGFQ ADRRFASLLAKGN + SS GG A   + AGIPGPW+PVAGP+EG QY  A   QD  GQR  Y RP   DP     EY G AH + YPSR AP HP             FEEGG G   L       HP  GPHAAAFQ
Sbjct:   30 EDVWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGRPQQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNVKTSSGGGTA-GVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDLGQRTEYARPEAYDPNAQQEEYGGEAHNYSYPSRAAPHHPQXXXXXXXXXXXXFEEGGRG-FPLXXXXXXXHPGVGPHAAAFQ 271
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BLAST of mRNA_P-littoralis_Contig201.33.1 vs. uniprot
Match: D8LRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK9_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.600e-38
Identity = 104/178 (58.43%), Postives = 111/178 (62.36%), Query Frame = 1 
Query:    1 EDVWDDRAILKAFDDALNTHTRKPVDEVEARKWNKHAAQEVAAQPSTA-GSRLPMSAPSSPRGRTGSNKIGGPSSXXXXXXXXXXXXDR-RSVDGGQSQSHNQGFQAADRRFASLLAKGNAEASSEGGRAPRTLPAGIPGPWQPVAGPSEGAQYSGATP-QDGGGQRYGYGRPGPSDP 525
            ED+WDDRAILKAFDDALN+H+RKPVD VEARKWNKHAAQ VA QP TA G                         XXXX         R RSV  G     +QGFQ ADRRFASLLAKGNAEASS GG A   + AGIPGPW+PVAGP+EG QY  A   QD  GQR  Y RPG  DP
Sbjct:   13 EDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGKPQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGH---RDQGFQEADRRFASLLAKGNAEASSGGGTA-GVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDP 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig201.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JL72_9PHAE8.750e-4752.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRK9_ECTSI3.600e-3858.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig201contigP-littoralis_Contig201:142170..144281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size738
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000180.1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.261378-CDS-P-littoralis_Contig201:142169..1422021680789987.261378-CDS-P-littoralis_Contig201:142169..142202Pylaiella littoralis U1_48CDSP-littoralis_Contig201 142170..142202 +
1680789987.2731743-CDS-P-littoralis_Contig201:142738..1427921680789987.2731743-CDS-P-littoralis_Contig201:142738..142792Pylaiella littoralis U1_48CDSP-littoralis_Contig201 142739..142792 +
1680789987.2838223-CDS-P-littoralis_Contig201:143304..1437081680789987.2838223-CDS-P-littoralis_Contig201:143304..143708Pylaiella littoralis U1_48CDSP-littoralis_Contig201 143305..143708 +
1680789987.2951872-CDS-P-littoralis_Contig201:144034..1442811680789987.2951872-CDS-P-littoralis_Contig201:144034..144281Pylaiella littoralis U1_48CDSP-littoralis_Contig201 144035..144281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig201.33.1prot_P-littoralis_Contig201.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig201 142170..144281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig201.33.1

>prot_P-littoralis_Contig201.33.1 ID=prot_P-littoralis_Contig201.33.1|Name=mRNA_P-littoralis_Contig201.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
EDVWDDRAILKAFDDALNTHTRKPVDEVEARKWNKHAAQEVAAQPSTAGS
RLPMSAPSSPRGRTGSNKIGGPSSSTNSTAAAAYHHDRRSVDGGQSQSHN
QGFQAADRRFASLLAKGNAEASSEGGRAPRTLPAGIPGPWQPVAGPSEGA
QYSGATPQDGGGQRYGYGRPGPSDPYQWGPEYSGGAHGFPYPSRGAPQHP
PPHPPSGAAVANFEEGGPGRHGLPPPPQPPHPEAGPHAAAFQVPH*
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mRNA from alignment at P-littoralis_Contig201:142170..144281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig201.33.1 ID=mRNA_P-littoralis_Contig201.33.1|Name=mRNA_P-littoralis_Contig201.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2112bp|location=Sequence derived from alignment at P-littoralis_Contig201:142170..144281+ (Pylaiella littoralis U1_48)
GAAGATGTGTGGGACGACCGAGCAATTTTGAAGGTGAGATTTTTCGGAGC
TTGGTGCGGGCGGGAGTTGGTGTCTGCGTTTCAATAATTTAACTTGCGGC
TGGACTTATCCTCAAACCGTCTCAAATCTCAAAGACATACGTAGTCCCCT
TTGCTAGTAGATTTGACCCACAGTAGCCCTTTTTGTCCGTAGTTTCGATC
CACATGCTCTCCCAAAATCCAAACGGTGAGTTTTGCAGCTCGTGTCTTGT
CACAAGCCCTTTCTGCGCGACTCTTGACGTATCGCATGGAAGAATACATG
GGCATTTTTGCTGCTTCGACGACTTGTGCCTCTTGCCCTAGCATCTCTTG
TGTGCTCCTCCCGCCGGGCGTTGCCGGTGCACAAAATGCAGCGGCTTTTG
AAACGACGCACGAAGACAAGTTTCTTTGTGGGTGGGTCTACTCGTCTTTT
GTGGTCTCACACAGCCGTTCTCTGCCTCTTGTCTCTCTACCGACCTCCGC
CCCCTCCGTCCTTCCCCTGCTTGTCCCCCTGGATTAATTTCTCGCCATTC
TGTATACCTTCCCGCGCAGGCCTTCGACGATGCCTTGAATACTCACACGC
GCAAGCCCGTTGATGAAGTGGAGGTACGTGGAAACGATCTTCAGCGATTT
ACAGCTGGATTTACCTTTTTGCTCTTCAGCGATGTACAGCTGGGTTTACC
TATTATATGTGTTGTCATCCCATACTCTCTGGCACACTAGTCTGCACCCT
GCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAG
GTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGA
GATTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAG
CCGAATCTGCTTTTACTAACAGCATAGCCGCTTTCAAAGTAGCAAATGTG
TTCTAGCTGAACTCCCTGGCATAGTGCGATTGTTCTTTTCTGGCGCCCCG
TGAACTTTATTCGCGACGAAATGAACACCACGGCGGAATGCCCATTCGTG
GTACGAGCCTGGCACTGCTGTACGCTTTTTCACTACCTTCCGCCCTCACT
GTTCCTTTCCTTCGCCACCACCAATAAACGAACAGGCTCGCAAGTGGAAC
AAACATGCCGCGCAGGAAGTAGCCGCTCAGCCCTCTACAGCGGGAAGCAG
GCTGCCGATGTCTGCGCCTTCCTCGCCTCGCGGGAGAACAGGCAGCAACA
AAATCGGAGGACCATCGTCGTCCACGAACAGCACAGCAGCAGCGGCGTAC
CACCACGACCGTCGCTCCGTCGATGGTGGCCAGAGCCAAAGTCATAACCA
GGGTTTCCAGGCGGCCGATCGGCGTTTTGCAAGCCTTCTGGCGAAGGGAA
ACGCCGAGGCGTCATCCGAAGGGGGGCGGGCACCGAGGACGCTGCCGGCG
GGCATCCCGGGGCCTTGGCAGCCTGTGGCTGGTCCGAGCGAGGGGGCCCA
GTACAGCGGGGCAACGCCCCAAGACGGTGGTGGGCAGCGGTGAGAGGTCA
TTCTGAAAAACGAGTGTTTTCGTTTCAGCCGTTGTGCGTGGAACCATTTG
TGATTTGTTTCATTCACTCGTTGATTCGTTCATACTCGTTGAATCTTTTT
TTCCGCTCCACAAATACGAAGTACACAAACACGCGGACGCGATATTGAAG
GACACCCACAGCATTCATGAAGACATTCTACAGCAGTGTCCTCGTCGCCG
TCCATCGATTGCTCCAACGCAAGCCTCCTTCTCTCCGTCACACCCACGAT
GCTCGCGCTACTTTCGAACCTTTGGATGTCCTCGTCTCGTGCGCGATGGA
ACTATGATATGATAGGTACGGGTACGGGAGGCCTGGCCCTTCTGATCCAT
ATCAATGGGGCCCAGAATACAGCGGTGGGGCACATGGTTTTCCATACCCA
TCCAGAGGGGCGCCTCAGCATCCGCCCCCCCATCCCCCGTCCGGTGCCGC
TGTAGCGAACTTTGAGGAGGGAGGCCCGGGTCGCCATGGACTACCCCCGC
CACCGCAACCACCACACCCTGAAGCGGGCCCCCACGCAGCAGCCTTTCAG
GTGCCGCACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig201:142170..144281+

>mRNA_P-littoralis_Contig201.33.1 ID=mRNA_P-littoralis_Contig201.33.1|Name=mRNA_P-littoralis_Contig201.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig201:142170..144281+ (Pylaiella littoralis U1_48)
GAAGATGTGTGGGACGACCGAGCAATTTTGAAGGCCTTCGACGATGCCTT
GAATACTCACACGCGCAAGCCCGTTGATGAAGTGGAGGCTCGCAAGTGGA
ACAAACATGCCGCGCAGGAAGTAGCCGCTCAGCCCTCTACAGCGGGAAGC
AGGCTGCCGATGTCTGCGCCTTCCTCGCCTCGCGGGAGAACAGGCAGCAA
CAAAATCGGAGGACCATCGTCGTCCACGAACAGCACAGCAGCAGCGGCGT
ACCACCACGACCGTCGCTCCGTCGATGGTGGCCAGAGCCAAAGTCATAAC
CAGGGTTTCCAGGCGGCCGATCGGCGTTTTGCAAGCCTTCTGGCGAAGGG
AAACGCCGAGGCGTCATCCGAAGGGGGGCGGGCACCGAGGACGCTGCCGG
CGGGCATCCCGGGGCCTTGGCAGCCTGTGGCTGGTCCGAGCGAGGGGGCC
CAGTACAGCGGGGCAACGCCCCAAGACGGTGGTGGGCAGCGGTACGGGTA
CGGGAGGCCTGGCCCTTCTGATCCATATCAATGGGGCCCAGAATACAGCG
GTGGGGCACATGGTTTTCCATACCCATCCAGAGGGGCGCCTCAGCATCCG
CCCCCCCATCCCCCGTCCGGTGCCGCTGTAGCGAACTTTGAGGAGGGAGG
CCCGGGTCGCCATGGACTACCCCCGCCACCGCAACCACCACACCCTGAAG
CGGGCCCCCACGCAGCAGCCTTTCAGGTGCCGCACTGA
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