mRNA_P-littoralis_Contig200.134.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.134.1
Unique NamemRNA_P-littoralis_Contig200.134.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 7.650e-42
Identity = 82/151 (54.30%), Postives = 101/151 (66.89%), Query Frame = 1
Query:   94 MLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHIAV 546
            MLAA+  V+ +  +    +LK Q+N+GVGRK A+RKLAK RSQ E A+ A+ AC+ GW  G+EYF  V KEC GA AA T    E+ +DVSHAQAGKL+ QA AL+ VY KLL G S    FE  A  L + V T+KQWE EYR KGHI +
Sbjct:    1 MLAASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAA-TSAGLEETIDVSHAQAGKLLTQAQALRAVYSKLLQGVSKRQAFEGSAEFLELAVGTIKQWELEYRTKGHIVL 150          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.150e-35
Identity = 76/137 (55.47%), Postives = 91/137 (66.42%), Query Frame = 1
Query:  133 ELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHI 540
            E+ RP +LK Q+N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC  A A ++    E  L VSHAQAG L L+A+ALKG+Y KLL G S    FEE A    V  ST+++WE  YR KGHI
Sbjct:   13 EVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSSAGLNESVL-VSHAQAGSLQLKALALKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHI 148          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.740e-33
Identity = 73/149 (48.99%), Postives = 94/149 (63.09%), Query Frame = 1
Query:   94 MLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHI 540
            M  AA  V+ +  +  + +LK Q+N+GV R  A+ KLA  RSQ E AA A+ A + GW  GVEYF  V KEC  A AA T    ++ +DVSHAQAGKL+++A+AL+ VY KLL G S    FE  A  + +   T+KQWE EYR KGHI
Sbjct:   28 MFDAAREVDRHEKDWRQAFLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAA-TSAGLDETMDVSHAQAGKLLIKALALRAVYSKLLEGVSRREAFEASAEFVEMSEGTIKQWELEYRTKGHI 175          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.830e-31
Identity = 81/191 (42.41%), Postives = 106/191 (55.50%), Query Frame = 1
Query:    1 MRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAE--------QPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHIAV 546
            +R    +   +L  G  Q A   +RD+  A  ++ AV   +   E+ RP +LK Q+N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC   ++       +        + + VSHAQAG L  +A+ALKG+Y  LL G S    FEE A    V  ST ++WE  YR KGHI V
Sbjct:  158 LRQAAQQLNYYLERGQLQCAQMVSRDLPGA--MSYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSSHTCWTQCKRVWATRCSESVLVSHAQAGSLQFKALALKGLYHMLLRGVSKRQAFEETAEFFEVASSTPREWELSYRTKGHIQV 346          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.220e-31
Identity = 82/182 (45.05%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    1 MRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHIAV 546
            +R    +   ++  G    A  A+RD+    ML A   V  +       +LK Q+N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC  A AA +    E  L VSHAQAG L  +A+ALK VY KLL G      FE+ A    V  ST+++WE  YR KGHI V
Sbjct:  152 VREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVL-VSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHIQV 331          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 5.450e-31
Identity = 81/180 (45.00%), Postives = 101/180 (56.11%), Query Frame = 1
Query:    1 MRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPYLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHI 540
            +R    +   ++  G    A  A+RD+    ML A   V  +       +LK Q+N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC  A AA +    E  L VSHAQAG L  +A+ALK VY KLL G      FE+ A    V  ST+++WE  YR KGHI
Sbjct:  152 VREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVL-VSHAQAGSLQFKALALKAVYHKLLKGAPKRQAFEDTAEFFEVADSTLREWELSYRTKGHI 329          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 8.950e-28
Identity = 77/183 (42.08%), Postives = 101/183 (55.19%), Query Frame = 1
Query:    1 MRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHIAV 546
            +R    +   +L  G  Q A   +RD+  A +   AV   +    + RP +LK Q+N+G+GRK A+RKLAK +SQ +  A A+ ACR GW  G      V KEC  A A  +    E  L VSH+QAG L  +A+A KG+Y KLL G S    FEE A    V  ST+++WE  YR KGHI V
Sbjct:   71 LRQAAQQLNGYLERGQLQCAQMVSRDLPGAML--DAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTSAGLNESVL-VSHSQAGSLQFKALARKGLYHKLLRGVSKRQAFEETAEFFEVASSTLREWELSYRTKGHIQV 250          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 3.250e-24
Identity = 73/175 (41.71%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   31 FLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP---YLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHIAV 546
            +L  G  Q A   +RD+  A  ++ AV   +   E+ RP   +LK Q+N    RK A+RKL K RSQ E AA A+ ACR GW  G +YF  V KEC  A A  +          +   AG L  +A+ALKG+Y KLL G      FEE A    V  ST+++WE  YR KGHI V
Sbjct:  123 YLERGQLQCAQMVSRDLPGA--MSDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTS----------AGLNAGSLQFKALALKGLYHKLLRGVPKRQAFEETAEFFQVASSTLREWELSYRTKGHIQV 282          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.180e-22
Identity = 70/172 (40.70%), Postives = 88/172 (51.16%), Query Frame = 1
Query:   34 LRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRP-YLKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHIAV 546
            L  G  Q A   +RD+  A  ++ AV   +   E  RP +LK Q+N+G+                E AA A+ ACR GW  G +YF  V KEC  A A  +    E  L VSH QAG L  +A+AL G+Y KLL G S    FEE A    V  ST+++WE  YR KGHI V
Sbjct:  172 LERGKLQCAQMVSRDLPGA--MSDAVKEAHQQEEACRPAFLKRQSNRGL----------------EKAAAASAACRSGWERGQDYFRVVIKECQSAVAVTSAGLNESVL-VSHTQAGSLQFKALALNGLYHKLLRGVSKRQAFEETAEFFEVAFSTLREWELSYRTKGHIQV 324          
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.190e-13
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  346 EQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSATVVFEEMAGLLAVGVSTVKQWEREYRHKGHI 540
            ++P+DVSHAQAGKL+ +A AL+GVY KLL G S    FEE A  L V V T+KQWE EYR KG I
Sbjct:    4 QEPIDVSHAQAGKLLTKAHALRGVYSKLLKGVSKRQAFEESAEFLQVSVGTIKQWELEYRTKGRI 68          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G1V5_ECTSI7.650e-4254.30Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5LDJ5_9PHAE2.150e-3555.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEU9_ECTSI1.740e-3348.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVH8_9PHAE2.830e-3142.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE4.220e-3145.05Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KAS5_9PHAE5.450e-3145.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE8.950e-2842.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM4_9PHAE3.250e-2441.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K534_9PHAE4.180e-2240.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI8_9PHAE1.190e-1361.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:417642..418493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons2
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789985.3996916-CDS-P-littoralis_Contig200:417641..4179891680789985.3996916-CDS-P-littoralis_Contig200:417641..417989Pylaiella littoralis U1_48CDSP-littoralis_Contig200 417642..417989 +
1680789985.4089856-CDS-P-littoralis_Contig200:418295..4184931680789985.4089856-CDS-P-littoralis_Contig200:418295..418493Pylaiella littoralis U1_48CDSP-littoralis_Contig200 418296..418493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.134.1prot_P-littoralis_Contig200.134.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 417642..418493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.134.1

>prot_P-littoralis_Contig200.134.1 ID=prot_P-littoralis_Contig200.134.1|Name=mRNA_P-littoralis_Contig200.134.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
MRTLLHKCEAFLRDGMAQSAHEATRDISAAKMLAAAVAVENNWAELTRPY
LKSQANKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQ
KECLGATAAATGHDAEQPLDVSHAQAGKLMLQAVALKGVYQKLLLGWSAT
VVFEEMAGLLAVGVSTVKQWEREYRHKGHIAV
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mRNA from alignment at P-littoralis_Contig200:417642..418493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.134.1 ID=mRNA_P-littoralis_Contig200.134.1|Name=mRNA_P-littoralis_Contig200.134.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=852bp|location=Sequence derived from alignment at P-littoralis_Contig200:417642..418493+ (Pylaiella littoralis U1_48)
ATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTCGAGACGGCATGGC TCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCTGCCAAGATGCTTG CTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTTGACTAGACCGTAC CTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGAGCGCTATTAGGAA GCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCAACAGCAGCCAAGG CATGTAGAGAAGGGTGGAGCAGTGGAGTGGAGTACTTCGAACGCGTGCAA AAAGAATGCCTTGGAGCAACCGCAGCAGCTACCGGCCATGATGCCGAGGT GAGCATAAAATATGAGTAATTTATCATATTGTATTAGATTATATCCTATC ATATTACATTTTAGTTTATCGCGTGATAACGTTTGACTGCTGCACTACTG TTGTATTTGTGGTGCACCACTGCTGTGTGCATTTACCGCTGCTGTATTCA TGCATATCATATGATATCATATGATATCATACAAGGACATACTCCGGAGT ATATCATATGGACTCCCCAAGACGCCAACCTCCACTGCGTCTGTCGTGTT CTCTGTGCCCCTCGCCTACCTTTCGCCGCGCTTGTTTGCCTCCCTGTCCT ACAGCAACCTCTGGACGTTTCGCACGCACAAGCAGGGAAGTTGATGCTAC AAGCGGTGGCTTTGAAGGGCGTTTACCAAAAGCTGCTACTCGGGTGGTCG GCAACAGTAGTTTTCGAGGAAATGGCGGGTCTTCTGGCAGTGGGTGTAAG CACCGTCAAGCAGTGGGAGAGGGAGTACCGCCACAAGGGCCACATCGCGG TG
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:417642..418493+

>mRNA_P-littoralis_Contig200.134.1 ID=mRNA_P-littoralis_Contig200.134.1|Name=mRNA_P-littoralis_Contig200.134.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig200:417642..418493+ (Pylaiella littoralis U1_48)
ATGCGGACGCTCCTGCACAAGTGTGAAGCGTTCCTTCGAGACGGCATGGC
TCAATCTGCGCACGAAGCGACGCGGGATATTTCTGCTGCCAAGATGCTTG
CTGCGGCGGTTGCGGTGGAAAACAATTGGGCGGAGTTGACTAGACCGTAC
CTCAAAAGTCAAGCCAACAAGGGCGTGGGCAGGAAGAGCGCTATTAGGAA
GCTGGCGAAGAAGAGGTCACAGTGGGAGAACGCGGCAACAGCAGCCAAGG
CATGTAGAGAAGGGTGGAGCAGTGGAGTGGAGTACTTCGAACGCGTGCAA
AAAGAATGCCTTGGAGCAACCGCAGCAGCTACCGGCCATGATGCCGAGCA
ACCTCTGGACGTTTCGCACGCACAAGCAGGGAAGTTGATGCTACAAGCGG
TGGCTTTGAAGGGCGTTTACCAAAAGCTGCTACTCGGGTGGTCGGCAACA
GTAGTTTTCGAGGAAATGGCGGGTCTTCTGGCAGTGGGTGTAAGCACCGT
CAAGCAGTGGGAGAGGGAGTACCGCCACAAGGGCCACATCGCGGTG
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