mRNA_P-littoralis_Contig200.94.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig200.94.2
Unique NamemRNA_P-littoralis_Contig200.94.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig200.94.2 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.440e-37
Identity = 94/215 (43.72%), Postives = 126/215 (58.60%), Query Frame = 2 
Query: 1157 WVAKFVFGDGNCAWRALAMAIWGTDVYWVQLKLVVLAWSVANTELLLAEGRALYDDTKFFTDEIHSRYGRFEQGDDVSTSDNRFE---MLIASVEYYTTDKTWGSDLTMLMASQAPRIPVKMLNPMDK--KSRDEYDAQDSQPLHGLGRKGDDMGDYRHSQVFVPDEAALVYRGVGPGENALVVEEAAVALTDGYRQAGSSELADIAEINRNTIC 1786
            WVA +V GDGNC WR+LA  +W +D YW QLKLVVLAW+ A+ E L++EGR L D +  F+D+IH+  G       V  + +  +   ML+ASV Y   D  WG D T+L+ASQA +I VK+L+P D   + RDE  A     + G GRKGD + D R SQ F+ D+A       G G    +V EA V LT    QA   EL ++ E+ ++T C
Sbjct:    6 WVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDIHAGLGYAYSATCVGAAPSVAQTSRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDVMVRKRDESSATPG-TIRGAGRKGDKVDDTRLSQTFLADDAVSCLHIQGGGR---MVAEATVVLTSCTGQASVGELDNLVEVTKSTAC 216
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BLAST of mRNA_P-littoralis_Contig200.94.2 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.630e-32
Identity = 108/320 (33.75%), Postives = 161/320 (50.31%), Query Frame = 2 
Query:  875 DTL--KLLTKVGESCKEIL-----RAKASGGDGASEPPQPKTSLDVAIDFITKSCT*KDVFGTPPGVLPXXXXXRTGGEPEDAKPYDYNATKIIPKTMRNKWVAKFVFGDGNCAWRALAMAIWGTDVYWVQLKLVVLAWSVANTELLLAEGRALYDDTKF--FTDEIHSRY-GRFEQGDDVSTSDNRFEMLIASVEYYTTDKTWGSDLTMLMASQAPRIPVKMLNPMDKKSRDEYD----AQDSQPLHGLGRKGDDMGDYRHSQVFVPDEAA--LVYRGVGPGENALVVEEAAVALTDGYRQA--GSSELADIAEINRNT 1780
            DTL  + L+++G +   ++     RA+          P  +  L      I   CT   VFGTP GV+P       G E      YD  AT I+   +R  +VA +V GDGNC WR++A A+WGTD YW QLKL VLAWS  N E L+ EG AL+       + DEIH+++  R   G      D+   ML+ S+  ++ ++ WG  L  ++ ++   + +KM +P D ++R   D    A  +   +G G + D+ GD+R+S   VP      ++ RGV   E+ +VVEE A+ +   Y  A  G   L+DI  I  +T
Sbjct:   10 DTLASRNLSRLGSAALGVVNNTSQRARRENAGAKGRIPSQREYLRA----IAAECTWPKVFGTPEGVVPTVARPGKGQEM-----YDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIYRGPDGKVDHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFDMRARIRADTSGAAAKATASYGGGSE-DEFGDHRYSFTKVPTAGRKEIILRGVSDEED-IVVEEIAITMAS-YDSAVVGDGSLSDIPVIEADT 317
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BLAST of mRNA_P-littoralis_Contig200.94.2 vs. uniprot
Match: A0A6H5JP78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP78_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.690e-19
Identity = 68/176 (38.64%), Postives = 97/176 (55.11%), Query Frame = 2 
Query: 1268 WSVANTELLLAEGRALYDDTKFFTDEIHSRYG-RFEQGDDVSTSDNRFEMLIASVEYYTTDKTWGSDLTMLMASQAPRIPVKMLNPMDKKSRDEYDAQDSQPLHGLGRKGDDMG--DYRHSQVFVPDEAALVYRGVGPGENALVVEEAAVALTDGYRQAGSSELADIAEINRNTIC 1786
            W  AN E L++ GR L D TK ++ +IH  +     + DD +T  N+ +MLIASV  ++    WG DLTML+ASQA RI VK++  +D  SR   +A  +        + D++   D RHSQ F+P +A    R VG G+    V EA V LT    QA + EL ++ E+ + T C
Sbjct:    9 WPAANAEDLVSRGRILSDFTKNYSSDIHGAFAVTANRLDDAATVANKSKMLIASVADFSKPACWGGDLTMLLASQALRITVKLVCSIDMMSRKRDEASATLETDRGSTRKDNINPEDNRHSQTFLPGDAVSSLR-VGGGDR--TVTEATVILTSSCTQASAGELDNLVEVTKATTC 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig200.94.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K454_9PHAE5.440e-3743.72SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.630e-3233.75SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JP78_9PHAE1.690e-1938.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig200contigP-littoralis_Contig200:309622..312266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2158
Hectar predicted targeting categoryother localisation
Exons3
Cds size648
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.217923-UTR-P-littoralis_Contig200:309621..3099871680789984.217923-UTR-P-littoralis_Contig200:309621..309987Pylaiella littoralis U1_48UTRP-littoralis_Contig200 309622..309987 -
1680789984.2442105-UTR-P-littoralis_Contig200:310901..3109491680789984.2442105-UTR-P-littoralis_Contig200:310901..310949Pylaiella littoralis U1_48UTRP-littoralis_Contig200 310902..310949 -
1680789984.260223-UTR-P-littoralis_Contig200:311170..3122661680789984.260223-UTR-P-littoralis_Contig200:311170..312266Pylaiella littoralis U1_48UTRP-littoralis_Contig200 311171..312266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789984.2265463-CDS-P-littoralis_Contig200:309987..3099921680789984.2265463-CDS-P-littoralis_Contig200:309987..309992Pylaiella littoralis U1_48CDSP-littoralis_Contig200 309988..309992 -
1680789984.2351213-CDS-P-littoralis_Contig200:310258..3109011680789984.2351213-CDS-P-littoralis_Contig200:310258..310901Pylaiella littoralis U1_48CDSP-littoralis_Contig200 310259..310901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig200.94.2prot_P-littoralis_Contig200.94.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig200 309988..310901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig200.94.2

>prot_P-littoralis_Contig200.94.2 ID=prot_P-littoralis_Contig200.94.2|Name=mRNA_P-littoralis_Contig200.94.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=216bp
MRNKWVAKFVFGDGNCAWRALAMAIWGTDVYWVQLKLVVLAWSVANTELL
LAEGRALYDDTKFFTDEIHSRYGRFEQGDDVSTSDNRFEMLIASVEYYTT
DKTWGSDLTMLMASQAPRIPVKMLNPMDKKSRDEYDAQDSQPLHGLGRKG
DDMGDYRHSQVFVPDEAALVYRGVGPGENALVVEEAAVALTDGYRQAGSS
ELADIAEINRNTICG*
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mRNA from alignment at P-littoralis_Contig200:309622..312266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig200.94.2 ID=mRNA_P-littoralis_Contig200.94.2|Name=mRNA_P-littoralis_Contig200.94.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=2645bp|location=Sequence derived from alignment at P-littoralis_Contig200:309622..312266- (Pylaiella littoralis U1_48)
GATCGATCGCCTGCCGAAGATAGGACGGGGAGCAGGTGGCTGTGTTGTTT
TTTTCCTCTGTAGAGCGTTATGATGGTATTTGTTTGGTGATGATGGCCTT
TGTTTTGGAGGAATTGGTGGAAAGCTTTGTAGAGAAAAAGTGACGAACAA
AGCATACAGCAGTAAAGTACAACATACATGCAATCATTCATATGTACTGC
TGCTGCCGTACAGCACCAGCAGTCTTTTAGCAGCATACATATGCACGAGT
GAAGTACAATACAGCAGGTATCCCTATACGGTAATACCGTAGGTTTCAAC
ATTACAGCAGTGGTACAGAGTGCTGAAAGGCAATGCCACGGATCAGCCCC
CTCTTTCTAGCGAAAATGATACATACTGTACAAAACAGCACTACGTAGTG
TTCTGTGTTGAAACCGACACATCCATTCGCGTGTGTGTGTCTTAGGACGG
TTCTTGAATAAACACACGCAAGAGGCGATGATTTTGCTGCTGCTGCTACT
TGCTTCTGCACGGTAACTTCATTCGCCAGAGAAGCGATATCGTACAGCAG
TTATGTCGTCATTTCCTCTCCACAAGCCACTAGCCCGTTCATGCATTACT
AGTGGGCTTTTTTACCCCCCACGAACGACACGATCAACGTTACTGAGGCG
GCGATTTAAAGCGTAACACAATTAGTTAGTCTTTCATCTTTGATGATTGC
GACAAGAAATCGTGGCTATGCTGACTGACTGCCCGGACGAATTTTATCGT
TTTGCTCTTACCTTCCAGCACCACCATCGTGCGAGGAAAGAAACACACAG
CAACCCACCAAAGCGCTTTCTCTTCGCTGACGCTGCCTTATTTCCGTCAC
CTCCCCAGTGTTATCTCGCAGTGCGACACACTTAAACTGTTGACAAAGGT
CGGCGAGAGTTGCAAGGAAATCTTGCGCGCAAAAGCCTCGGGGGGAGACG
GGGCATCGGAACCGCCTCAGCCGAAGACCTCGTTGGACGTGGCGATAGAT
TTCATCACCAAGAGCTGCACGTAGAAAGATGTGTTCGGAACGCCTCCTGG
GGTGCTGCCGCCGCCGCCGCCACCGCGAACGGGTGGAGAGCCAGAGGTAT
TCCCGTTGTCTGTATAGTTTCACGAGGTGCTGTACTTCGAGAGTGTAGAA
AACAATGTCATAGCTTCGACGCAATGTCTGGGCGTATCGACGGTAACAAG
GAGCTAGATATTTTCCCTATCGCGCTTTGTCGCATCCTGTTTCATTTGAT
GCCTTGGCCTCAATCATGTTCCCGCCAACCGTTTGCGTTGCACTGTACAC
CCGATTGCCGTCGATAGGACGCAAAGCCTTACGACTACAACGCCACCAAG
ATTATCCCGAAGACGATGCGCAACAAGTGGGTGGCCAAGTTCGTGTTCGG
TGATGGCAACTGCGCTTGGCGCGCCTTGGCGATGGCCATCTGGGGCACCG
ACGTGTACTGGGTCCAACTTAAACTTGTTGTTCTCGCGTGGTCTGTAGCA
AACACGGAGTTGCTCTTAGCAGAGGGTCGCGCCTTGTACGATGACACGAA
GTTCTTTACGGATGAGATCCACAGCAGGTACGGTAGGTTCGAGCAAGGGG
ACGATGTGTCGACGAGCGACAATCGCTTCGAAATGCTCATCGCTTCCGTC
GAGTACTACACCACCGATAAGACCTGGGGAAGTGATCTGACGATGCTGAT
GGCATCACAGGCACCAAGGATACCGGTGAAGATGTTGAACCCAATGGATA
AGAAGTCGCGGGATGAGTACGATGCGCAGGATTCACAGCCGCTTCACGGT
CTGGGGAGGAAGGGAGACGATATGGGAGACTACCGTCATTCCCAAGTGTT
TGTACCCGACGAGGCAGCGCTTGTGTACCGTGGAGTTGGCCCAGGTGAAA
ACGCGCTCGTCGTCGAAGAGGCCGCCGTCGCCTTGACGGATGGTTACCGC
CAAGCTGGTTCGAGTGAGCTCGCCGACATCGCCGAGATCAACAGAAACAC
CATCTGTGGTAAGGGATGCCACTTCGCGGCGTTTTTGAGCACGGACGGGA
ATAATTGTCCATTTCCGGTTGTGAAGGCGGCAACCCCGTTGATGAAGGAG
CTGGTAAGTTTCGCGTCGTAAGTTCCCAACCTTGGGGTAGGCACCGGAAC
AGCACAAAGAAATTTGCATAAGATCATTCGCCGATGCACCTGTCGGAGCA
TTGATCATCCGCTGATGCACCTCTTCAATGTTTTTCGAACCCTGCAATCA
TTGTAAATGTCCTCGTCCTTGCAGGATGAGCAATTGAGCAAGAAATACGA
CGAGGAACTAGCTGCGTTCAACCAAAGGAAATATATTCAGCCTGGCTCGG
AGGAGGCAAGGGCGGCGGCGGCGGCGGCGGTGGTAGCTGCGGCAACTAGG
CGGGAGGTGAGGAAGCAGTCATCTCGTGCGAACAAGCAGCTAGCGCGGGA
GGAATTGAAGAAAGCAAGGCAGGCGGAGGAAGACAAGGTCTCGGAGGAGA
AAAGGCGTAGAGAGAAGGAGGCCGAAGAAAAGATGATGGCGCGGGACGAA
CTCGCGCGAAGAATGCAGAAGGAAGACGAGGAAAAGGCACGCAAGAAAGA
AGGAGAGGGGGAGGGGGCAAAGTCCCCGAGCAACGACGACAAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig200:309622..312266-

>mRNA_P-littoralis_Contig200.94.2 ID=mRNA_P-littoralis_Contig200.94.2|Name=mRNA_P-littoralis_Contig200.94.2|organism=Pylaiella littoralis U1_48|type=CDS|length=648bp|location=Sequence derived from alignment at P-littoralis_Contig200:309622..312266- (Pylaiella littoralis U1_48)
ATGCGCAACAAGTGGGTGGCCAAGTTCGTGTTCGGTGATGGCAACTGCGC
TTGGCGCGCCTTGGCGATGGCCATCTGGGGCACCGACGTGTACTGGGTCC
AACTTAAACTTGTTGTTCTCGCGTGGTCTGTAGCAAACACGGAGTTGCTC
TTAGCAGAGGGTCGCGCCTTGTACGATGACACGAAGTTCTTTACGGATGA
GATCCACAGCAGGTACGGTAGGTTCGAGCAAGGGGACGATGTGTCGACGA
GCGACAATCGCTTCGAAATGCTCATCGCTTCCGTCGAGTACTACACCACC
GATAAGACCTGGGGAAGTGATCTGACGATGCTGATGGCATCACAGGCACC
AAGGATACCGGTGAAGATGTTGAACCCAATGGATAAGAAGTCGCGGGATG
AGTACGATGCGCAGGATTCACAGCCGCTTCACGGTCTGGGGAGGAAGGGA
GACGATATGGGAGACTACCGTCATTCCCAAGTGTTTGTACCCGACGAGGC
AGCGCTTGTGTACCGTGGAGTTGGCCCAGGTGAAAACGCGCTCGTCGTCG
AAGAGGCCGCCGTCGCCTTGACGGATGGTTACCGCCAAGCTGGTTCGAGT
GAGCTCGCCGACATCGCCGAGATCAACAGAAACACCATCTGTGGATGA
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