mRNA_P-littoralis_Contig196.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig196.21.1
Unique NamemRNA_P-littoralis_Contig196.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: D7FPJ6_ECTSI (DUF667 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ6_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 3.650e-98
Identity = 168/288 (58.33%), Postives = 181/288 (62.85%), Query Frame = 1
Query:   70 ELRQVGGRLSPDSWHIDAVLPPDASEMVYEDLQPVAAAMQECEVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPCSSILRHLCLHMKA----------------------------------------------------------------------------------------------LDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRLEEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRVVAE 651
            +LRQ+G RL+ DSWHIDA+LPP A EMVYEDLQPVAAAMQECEVLQEGN  SVFDDEELGVQVVELLGRRC V  PCSSILR+LCLH+K                                                                                               LDKFFSFEVEIVDDTKRYRYI+ISNTRSVADIG DRALLPL+LE+GWQRVNIDL+RTVRL FGSSYLTTSQVT+RASARVAK+FFQSQ FSD+ELPSHLRVVAE
Sbjct:   23 QLRQIGDRLAADSWHIDALLPPHAGEMVYEDLQPVAAAMQECEVLQEGNEASVFDDEELGVQVVELLGRRCGVAFPCSSILRYLCLHVKVTQFLRVIHSIVSGKQKDGCCRARETTCATAARVPRFHFFDQHQRISVRFCSELACCNVWLQTLVTTRRRFVPNTSSSTNMRLPKPRLRPDFLQTLDKFFSFEVEIVDDTKRYRYIDISNTRSVADIGDDRALLPLKLEDGWQRVNIDLERTVRLVFGSSYLTTSQVTVRASARVAKLFFQSQPFSDYELPSHLRVVAE 310          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: A0A835YVF2_9STRA (DUF667 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.240e-46
Identity = 85/199 (42.71%), Postives = 124/199 (62.31%), Query Frame = 1
Query:   64 MAELRQVGGRLS----PDSWHIDAVLPPDASEMVYEDLQPVAAAMQECEVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPCSSILRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRLEEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRVVA 648
            M E    GG L+     D+  +D VLP  +    Y DLQ V+AAM+ECE+L   N +S +DDEELGVQ++E+LG    V  PC  +   LC H+K +D+F S +V+++DDT ++R + +SN RSVA I    A LP++L  GW  + IDL+   R AFG+    T QV +  S RVAK+FF+ + ++D +LP HL+ ++
Sbjct:    1 MFEADDNGGNLANGDITDNTLVDLVLPAQSIGGEYADLQAVSAAMRECELLGGDNEISAYDDEELGVQMLEILGESARVAFPCYCVRPILCAHLKMIDRFCSIDVDLLDDTGQHRSMNLSNHRSVATIDGAYADLPMQLTSGWNHLAIDLNLVTRTAFGTGLSATCQVAVNGSCRVAKLFFEQEAYADAQLPGHLQALS 199          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: A0A7S1TVV2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVV2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.850e-44
Identity = 82/179 (45.81%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  109 WHIDAVLPPDASEMVYEDLQPVAAAMQECEVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPCSSILRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRLEEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRVV 645
            + ID VLPP+  +   E+L  V+AA   C+ L   N   V +DEELG +V+EL+G    + LP SSIL  L LH+K+   FF   ++ VD+TK+YR   ISN +S+  +    A LPL ++EGWQR+  +++     AFGS YLTT QV +R S  V+K FFQ  ++SD ELPSHLRV+
Sbjct:    9 YSIDCVLPPNEEDTDLENLHCVSAARAACKELPGDNEAEVVEDEELGKEVIELMGLEAELVLPTSSILPMLVLHVKSTSHFFWICIDFVDNTKKYRTFTISNKQSIVSVDETEAKLPLIIDEGWQRLCFNVEELTAKAFGSKYLTTYQVRVRGSVCVSKAFFQGHDYSDAELPSHLRVL 187          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: K3W6T8_GLOUD (DUF667 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6T8_GLOUD)

HSP 1 Score: 122 bits (307), Expect = 1.120e-30
Identity = 63/163 (38.65%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  154 YEDLQPVAAAMQECEVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPCSSILRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRL--EEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHL 636
            + D   +  A  EC  L  GN VS+ +DE++  ++VE+LG    +     +I R+L L +K L ++F F+VE+VDD ++YRY++ +N RS+A +    A LPL    ++GW+ + +DL      AFG+ ++TT+QV I  + R+ +VFFQ + +SD ELP+HL
Sbjct:   95 FADHPVIQQAQDECRNLLNGNIVSILEDEDVKEEIVEVLGPESELVFSTRNIFRYLVLFVKNLGQYFEFQVEVVDDKQKYRYLKATNARSLARVDNSVAQLPLAFGQQQGWRYLCMDLQELTMQAFGTKHVTTTQVRIGGNCRLLRVFFQDELYSDAELPTHL 257          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: W4G477_9STRA (DUF667 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G477_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.320e-27
Identity = 63/175 (36.00%), Postives = 103/175 (58.86%), Query Frame = 1
Query:  130 PPDASEMVYEDLQP-VAAAMQECEVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPCSSILRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRLEEG--WQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRVV 645
            P D  +++  +L P V  A  EC+ +   N V V +D ++   VVE+ G    V   C ++++ L L +K LD +F+ ++E+VDDTK YR   I+N+RS+A +      +PL   +G  W+ V +D+ R    AFG+ ++ T QVT+ A+ R+ +VFFQ  ++SD ELP  L ++
Sbjct:   22 PSDTGDLIPLELHPAVLLADDECQQVGGDNIVQVVEDADVHQPVVEIRGSDARVVFNCHNVMQFLVLFVKNLDAYFALDIEVVDDTKTYRTFHITNSRSLARVQASACQMPLVFGKGGTWRHVCLDVHRMCLDAFGTHHVATVQVTVHATCRLLRVFFQDVDYSDAELPPMLALL 196          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: F0W4I9_9STRA (Uncharacterized protein AlNc14C17G1810 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4I9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.980e-21
Identity = 51/154 (33.12%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  196 EVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPCSSILRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRL----EEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRVV 645
            E+L+  N VS+F DE++  QVV++ G+R  +    +S+LR+L L +K L +F   +V I+   + Y+ ++++N RS+A +  DR    + L    E GW+ + +DL      AFG+ ++ T+++ IR   R+ +V+FQ +E+ D +LP +L ++
Sbjct:   78 ELLRNNNQVSIFKDEDVNGQVVQIQGQREGLVFSVTSVLRYLVLFIKNLKQFVEIDVTILVSGREYKVMKVTNARSLAKVDADRCKCQIPLLFGAETGWRYLCMDLKDLSIQAFGTEHIATTRIRIRGFCRLLRVYFQEEEYHDHQLPPYLSLL 231          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: A0A6G1S9M0_9ACAR (UPF0468 protein C16orf80 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1S9M0_9ACAR)

HSP 1 Score: 95.5 bits (236), Expect = 7.520e-21
Identity = 48/144 (33.33%), Postives = 86/144 (59.72%), Query Frame = 1
Query:  235 DEELGVQVVELLGRRCCVT-LPCSSI-------LRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRLEEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRV 642
            DE++   V+E+       T + C  I       L H+ L +K LD+FF+FE+EI+DDTK  R    SN ++   +      +PL+LE GW  +N++L    R A+G++Y+ TS++T+ A+ R+ +++F  ++++D ELP+  ++
Sbjct:   39 DEDIKSLVLEITSSNVSTTYITCPKISKSLGITLSHIVLIVKNLDRFFTFEIEIIDDTKAKRRFRASNYQTRTRVKDFICTMPLKLESGWNHINLNLADFTRRAYGTNYVETSRITVNANCRLRRIYFADRQYTDEELPAEFKL 182          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: A0A024GDR5_9STRA (DUF667 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GDR5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.690e-20
Identity = 45/155 (29.03%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  196 EVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPCSSILRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRL----EEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRVVA 648
            E+L+  N +S+ +DE++ VQVV++ G +  +    +S+LR+L L +K L ++   +V I+   + Y+ + ++N RS+A +  D++   +      + GW+ + +DL      AFG+ ++ T+ + +R   R+ +V+FQ ++++D +LPS+L ++A
Sbjct:   78 ELLRNENQISILEDEDVNVQVVQIQGHKEGLVFSVNSVLRYLVLFIKNLKQYVEIDVTILVSGREYKVMNVTNARSLAKVDADQSKCQIPFLFGFKTGWRYLCMDLKELSMQAFGTEHIATTHIRVRGFCRLLRVYFQEEQYNDNQLPSYLSLLA 232          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: A0A6B2LJY4_9EUKA (DUF667 domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJY4_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 2.530e-19
Identity = 51/150 (34.00%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  220 VSVFDDEELGVQVVELLGRRC------CVTLPCSSI---LRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRLEEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRV 642
            +   DDE +  +V+E+ G         C   P  ++   L ++ L +K +DKFFSFE++I+DD    R    SN +SV  +      LPL+L++GW ++ IDL    + A+G++YL T QV I A+ R+ +++F  +  +D ELPS  ++
Sbjct:   34 IEFVDDEHIKSKVLEITGDNVAHHSIICPKDPKKTLGITLPYIILLVKNVDKFFSFEIQILDDKSVRRRFRASNFQSVTRVRPSICTLPLQLDDGWNQIQIDLAHYTKRAYGTNYLQTLQVQIHANCRIRRIYFAEKIMTDEELPSAFKL 183          
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Match: A0A834REJ3_SARSC (Cilia- and flagella-associated protein 20 n=2 Tax=Sarcoptes scabiei TaxID=52283 RepID=A0A834REJ3_SARSC)

HSP 1 Score: 89.0 bits (219), Expect = 2.930e-18
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  235 DEELGVQVVELLGRRCCVT-LPCSSILRH--------LCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRALLPLRLEEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQSQEFSDFELPSHLRV 642
            D E+   V+E+ G     T + C SI R         L L +K L +FFSFEVEI+DD    R    SN +S+  +      +PLRL+EGW ++  +L+   + A+GS+Y+ T +VTI A+ R+ +++F  + +S+ ELP+  ++
Sbjct:   39 DNEIQSLVIEITGSNVATTYITCPSIPRSGLGIKLPFLILIVKNLQRFFSFEVEILDDKNVRRRFRASNFQSITRVKHFMCSMPLRLDEGWNQIAFNLNDFCKRAYGSTYVETIRVTINANCRLRRIYFADRMYSEDELPAEFKL 183          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ6_ECTSI3.650e-9858.33DUF667 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YVF2_9STRA3.240e-4642.71DUF667 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S1TVV2_9STRA5.850e-4445.81Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
K3W6T8_GLOUD1.120e-3038.65DUF667 domain-containing protein n=1 Tax=Globispor... [more]
W4G477_9STRA3.320e-2736.00DUF667 domain-containing protein n=4 Tax=Aphanomyc... [more]
F0W4I9_9STRA1.980e-2133.12Uncharacterized protein AlNc14C17G1810 n=1 Tax=Alb... [more]
A0A6G1S9M0_9ACAR7.520e-2133.33UPF0468 protein C16orf80 n=1 Tax=Aceria tosichella... [more]
A0A024GDR5_9STRA5.690e-2029.03DUF667 domain-containing protein n=1 Tax=Albugo ca... [more]
A0A6B2LJY4_9EUKA2.530e-1934.00DUF667 domain-containing protein n=1 Tax=Arcella i... [more]
A0A834REJ3_SARSC2.930e-1835.17Cilia- and flagella-associated protein 20 n=2 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig196contigP-littoralis_Contig196:94528..97291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPJ6
PFAMsDUF667
Model size657
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.99e-99
EggNOG OGsKOG3213@1|root,KOG3213@2759|Eukaryota
Ec32 ortholog descriptionCilia/flagella-associated protein 20
Ec32 orthologEc-12_000830.1
Descriptionregulation of cilium movement involved in cell motility
Cds size657
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789939.134256-CDS-P-littoralis_Contig196:94527..947741680789939.134256-CDS-P-littoralis_Contig196:94527..94774Pylaiella littoralis U1_48CDSP-littoralis_Contig196 94528..94774 -
1680789939.1453648-CDS-P-littoralis_Contig196:95216..952901680789939.1453648-CDS-P-littoralis_Contig196:95216..95290Pylaiella littoralis U1_48CDSP-littoralis_Contig196 95217..95290 -
1680789939.1553879-CDS-P-littoralis_Contig196:95648..957941680789939.1553879-CDS-P-littoralis_Contig196:95648..95794Pylaiella littoralis U1_48CDSP-littoralis_Contig196 95649..95794 -
1680789939.164738-CDS-P-littoralis_Contig196:97101..972911680789939.164738-CDS-P-littoralis_Contig196:97101..97291Pylaiella littoralis U1_48CDSP-littoralis_Contig196 97102..97291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig196.21.1prot_P-littoralis_Contig196.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig196 94528..97291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig196.21.1

>prot_P-littoralis_Contig196.21.1 ID=prot_P-littoralis_Contig196.21.1|Name=mRNA_P-littoralis_Contig196.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
MTVIGTSASFGSDESKVDLDGMAELRQVGGRLSPDSWHIDAVLPPDASEM
VYEDLQPVAAAMQECEVLQEGNGVSVFDDEELGVQVVELLGRRCCVTLPC
SSILRHLCLHMKALDKFFSFEVEIVDDTKRYRYIEISNTRSVADIGTDRA
LLPLRLEEGWQRVNIDLDRTVRLAFGSSYLTTSQVTIRASARVAKVFFQS
QEFSDFELPSHLRVVAER*
back to top

mRNA from alignment at P-littoralis_Contig196:94528..97291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig196.21.1 ID=mRNA_P-littoralis_Contig196.21.1|Name=mRNA_P-littoralis_Contig196.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2764bp|location=Sequence derived from alignment at P-littoralis_Contig196:94528..97291- (Pylaiella littoralis U1_48)
ATGACGGTCATAGGCACCAGCGCAAGCTTTGGGTCTGATGAATCCAAGGT GGATCTTGACGGAATGGCGGAGTTGAGACAGGTAGGAGGTCGACTTTCTC CAGATTCGTGGCATATTGATGCGGTCCTTCCCCCCGATGCCAGCGAGATG GTGTACGAGGACCTCCAGCCTGTCGCCGCTGCAATGCAAGGTGAAAAAAT AATGTGCATTATACATCCATGCCCCCAAGGGTTTGGACTCTACAGACCTG TATGTCATACGTACGTTCAGTTTCGACAAACCTTACTGTACTTGAGTGCA TGTGTGTGCAACACCGAGTCCTTCTGTCGTGGATGTATGCCCTGTTCTGT TATTTTGTGTCGTAAATATGTTACAGCAGACAGTACAATACCCCTCTAGC CACCCGTGAAGTACTACTACTGCTTGCTGTAGATGTGAAGAATCGATGAC AAACAAACAAACATAAAACTGGATCCTTCTGCCCCTCTCCTCCACACAAC ATCAGCGTTTCTGGACCCTCGGGGCTGTCAAATTTCGTTGTCTTCGACCA CCTACTCTCTCGTTGATCAATGCGATAGCAGGTTGACCACCGAATAAGCG ACGTACATACAATGCAGCCAGTGATAACCAAAAGCATGCCGCTAGTAGCC GGCGACAGCCAAAAACTTGTCGCCACTTAATGCGGCGGAGAGGGAGCAGA TGAAGGGTTATTCTTAGCCTCCAAATCCAACGGCCTGTTTGTTTACGTGC CGCCTATTCCGTACCCCACAAACATCTCCACCACCAGTTCTAGTTTATCT CACTCCAGTCTCTTGTACACGGGAGTTGTGCAGCCGGGGTTCGTCATACA GGAAGGTTCCTCTCCCTGTATGCGCCCTCAACTTCTCTCTGAGGTGCACT GCATGTGTTCCATGGCGTTTGGTCCCCTTTCTTGACCCGTGTTTCTCCAC TTTCATGCAGATCGCCCAGTCCGCGACATTCGTTCCGCGTGGAGGTCTCT CCACCCACTCCACAAATAAATAAAGTAACACATCACATTTATCGTTTCCA AACCACCGTTCATGCAGCATGCGCCTCTGTCTGGGTGTGTAAATCGATTG GAAGTGGTGTGGGATTCACCAAGCGGTTTCGCCTGAGTATCGTATCACAC AACACCCGCGCCTGTATGATATCGTGTGCACGTTGTTTTTCTCCGCTGTG AAGAGCATGTAAACAAGCGGAGTAGCGCGACAGCAGTATCTCCTTTGAAT GCTAGCTTACTTTCTCCGCGCAGTGTATCCCACACTCACCGCATATCGCG AGCATAGGCCATGCGCGCAACCGCAGTACTGAACAATACGTGCATATATA ATATTGCAGTAACTAAGACACACGCGAAGTTTGTTTTATTTTGACGAAAT CGCGAAAAAGCTCCATGAAAATTGTGGAGAAAAATAACCAAGAGGCGTCA CGGTCACATGTTGTTCGCCACTTCCGTTCGGGGTGGTATTGGAACAGAAT GCGAAGTACTGCAAGAAGGGAACGGGGTCTCTGTTTTCGATGACGAGGAG CTGGGGGTACAGGTTGTCGAGCTTCTTGGGAGAAGATGCTGCGTGACCCT TCCTTGCAGCTCCATCTTACGGCATCTGTGCTTGCACATGAAGGTGACGC GGGTCCTGCAACCACGCCGCACACATACGACTAAGAAATTATGACTTCGA AGCTGCCCGTGCAACTTAGACTATCACGCGTACTGTAGTGTAAGTTACAG TCGTTTTTGCGGCCGTGCGAAAATTCTACTTCGAGAGGAGCAAAACGACA CACAGCAGCCTTCGTTCAGTCAACAATGGCTTTTCTGTAGGACTGCGGCC CCCAGAAACGGATGCATATCTGTAGTCTGCTACGAAATTGGTGCCTACAG TATTGTATCGTTTACCCCGTCGCCAACCACTCTTCCCCGTTCCTCTGCCG TTGCTTTTCGTGGCACACGAACAAACTCTTGAAAATCTTGATACCTTGCA GGCTCTGGACAAGTTTTTTTCGTTTGAGGTCGAGATCGTGGACGACACGA AGCGCTATCGGTACATAGAAATCAGGTGCAGAAGAAGTACAACACGGCCC AGCCGGCCTGAAAATTTGCTGTCGTTGCCCGAAATCGATACCGATACGTC TTACTGTTGACCGACCTAAAGGTTGGCAATAATCGCTGACGCGTATTTTT CTTCTGGTGCAATTGTGCATTCGCAGCTGCGCAGCGACCAACAATTACAC CGGGGCATGGCTCGTCCTACTTTTCCAGCTCACCCTAATCAAGTCGGTAT GCACCAGGAGCTCAAGGGTAAATGGCTCACAATGCTGTGGCCTACAACAC ACATCGACCCTCCGCCAACCGGTGTTCAAGCTTTTGTTTGCACCAGGACC GCCCTCCGTCGTCTCAAAAGAAAAATGCGCAGCCACTTGCGTGACGATTG CAGGAATCAGATGAATACCCTCCCCCCCCTCACTTCCATCTTGCACTGTC TCCGTCGCTCCCAAAAGCAACACTCGAAGCGTGGCGGACATTGGCACAGA CCGTGCTCTTCTGCCGCTCAGACTGGAGGAGGGCTGGCAGCGCGTGAACA TCGACCTAGACCGCACCGTGCGCCTAGCGTTCGGCTCGTCCTACCTCACG ACCTCGCAGGTCACCATCCGGGCGAGCGCGAGAGTCGCCAAGGTGTTCTT CCAGAGTCAGGAGTTTTCGGACTTCGAGCTCCCCAGCCACCTCAGAGTTG TTGCAGAGCGATAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig196:94528..97291-

>mRNA_P-littoralis_Contig196.21.1 ID=mRNA_P-littoralis_Contig196.21.1|Name=mRNA_P-littoralis_Contig196.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig196:94528..97291- (Pylaiella littoralis U1_48)
ATGACGGTCATAGGCACCAGCGCAAGCTTTGGGTCTGATGAATCCAAGGT
GGATCTTGACGGAATGGCGGAGTTGAGACAGGTAGGAGGTCGACTTTCTC
CAGATTCGTGGCATATTGATGCGGTCCTTCCCCCCGATGCCAGCGAGATG
GTGTACGAGGACCTCCAGCCTGTCGCCGCTGCAATGCAAGAATGCGAAGT
ACTGCAAGAAGGGAACGGGGTCTCTGTTTTCGATGACGAGGAGCTGGGGG
TACAGGTTGTCGAGCTTCTTGGGAGAAGATGCTGCGTGACCCTTCCTTGC
AGCTCCATCTTACGGCATCTGTGCTTGCACATGAAGGCTCTGGACAAGTT
TTTTTCGTTTGAGGTCGAGATCGTGGACGACACGAAGCGCTATCGGTACA
TAGAAATCAGCAACACTCGAAGCGTGGCGGACATTGGCACAGACCGTGCT
CTTCTGCCGCTCAGACTGGAGGAGGGCTGGCAGCGCGTGAACATCGACCT
AGACCGCACCGTGCGCCTAGCGTTCGGCTCGTCCTACCTCACGACCTCGC
AGGTCACCATCCGGGCGAGCGCGAGAGTCGCCAAGGTGTTCTTCCAGAGT
CAGGAGTTTTCGGACTTCGAGCTCCCCAGCCACCTCAGAGTTGTTGCAGA
GCGATAA
back to top