mRNA_P-littoralis_Contig196.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig196.1.2
Unique NamemRNA_P-littoralis_Contig196.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig196.1.2 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 2.410e-10
Identity = 34/89 (38.20%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:  523 LQDKNFEMSPLVTTALTVLRNESNTEDWLTLSQHLNALVRKSFTLGILADRELLDQLQFHG-DIIEEGGHPTAVLRVFSEMLPNKRHVA 786
            L  K  +M+PL TTALT LR E   EDW +   H++A++ K  TLG++  R +LD   + G D++ + G P  V  +F++++PN R+++
Sbjct:  174 LLSKTTQMNPLPTTALTPLRTEKGKEDWYSFKPHVDAIIAKGVTLGLMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNIS 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig196.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5U8_ECTSI2.410e-1038.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig196contigP-littoralis_Contig196:3361..7510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1790
Hectar predicted targeting categoryother localisation
Exons3
Cds size1164
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.9840834-UTR-P-littoralis_Contig196:3360..34111680789937.9840834-UTR-P-littoralis_Contig196:3360..3411Pylaiella littoralis U1_48UTRP-littoralis_Contig196 3361..3411 +
1680789938.0298393-UTR-P-littoralis_Contig196:6935..75101680789938.0298393-UTR-P-littoralis_Contig196:6935..7510Pylaiella littoralis U1_48UTRP-littoralis_Contig196 6936..7510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789937.9958122-CDS-P-littoralis_Contig196:3411..39031680789937.9958122-CDS-P-littoralis_Contig196:3411..3903Pylaiella littoralis U1_48CDSP-littoralis_Contig196 3412..3903 +
1680789938.0058293-CDS-P-littoralis_Contig196:6244..68191680789938.0058293-CDS-P-littoralis_Contig196:6244..6819Pylaiella littoralis U1_48CDSP-littoralis_Contig196 6245..6819 +
1680789938.0184598-CDS-P-littoralis_Contig196:6838..69351680789938.0184598-CDS-P-littoralis_Contig196:6838..6935Pylaiella littoralis U1_48CDSP-littoralis_Contig196 6839..6935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig196.1.2prot_P-littoralis_Contig196.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig196 3412..6935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig196.1.2

>prot_P-littoralis_Contig196.1.2 ID=prot_P-littoralis_Contig196.1.2|Name=mRNA_P-littoralis_Contig196.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=388bp
MKLEPLVTHVQPLGGGVPSFYQASAQASDIDSGVSGEGAAQFRARLAKSV
VAVRRSFGPFHRTAEGVGQVRFPPDRGGNPTRAGGHQRSAASAAPPKPLP
APTAPAAPAGASAGASADAGVDLLVARLQTLLALPATETAGADVLAPEDQ
RVVNYFSLQDKNFEMSPLVTTALTVLRNESNTEDWLTLSQHLNALVRKSF
TLGILADRELLDQLQFHGDIIEEGGHPTAVLRVFSEMLPNKRHVAGDHLS
GPRKTPRRQEAPQRVNRSVRSSARISWSVPFSRHHAARVAASSTAPQPRG
RGSSVRGGGGRYSSAGASVSLPFTLSTLPPAATGRRAAHQGGSTRGNGRG
ASAPPPPPTEKVHGQTPGEPAGHELFAQRRLLPQLRR*
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mRNA from alignment at P-littoralis_Contig196:3361..7510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig196.1.2 ID=mRNA_P-littoralis_Contig196.1.2|Name=mRNA_P-littoralis_Contig196.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4150bp|location=Sequence derived from alignment at P-littoralis_Contig196:3361..7510+ (Pylaiella littoralis U1_48)
GTTTTTGTCCCCTCTTCGCCCAATTTAATTTAATTGTTGGTAGAGCACCC
CATGAAATTGGAGCCCTTGGTGACCCACGTGCAGCCTCTGGGGGGCGGCG
TGCCCTCCTTTTACCAGGCGTCAGCGCAGGCGTCGGATATCGACAGTGGG
GTGAGCGGCGAAGGGGCGGCCCAGTTTAGGGCCCGTCTGGCGAAGTCCGT
CGTTGCCGTGCGTCGTTCGTTTGGCCCTTTCCACCGGACTGCTGAAGGCG
TCGGGCAGGTGCGTTTTCCTCCCGACCGAGGCGGAAATCCAACACGGGCT
GGGGGGCACCAGCGGAGCGCCGCGTCCGCCGCGCCTCCAAAGCCCCTGCC
GGCTCCAACCGCGCCTGCCGCGCCGGCCGGAGCGTCTGCTGGAGCGTCTG
CGGACGCCGGCGTGGACCTGCTGGTCGCGCGCCTTCAGACCCTGTTGGCG
CTGCCAGCGACAGAAACGGCTGGCGCGGACGTTTTGGCTCCGGAGGACCA
GCGGGTGGTAAACTACTTCTCCCTTCAAGACAAGAATTTCGAGGTGGGCT
GGTGGTTTCCTCTCTGGTTAAATGAGTTTGTTTGTAGAATTGTTTACTGT
CTTTTTGTGAGTTTCAGGATTGATCACTGCCCTGTTCTCACGATTGATTA
CTGCTGGCAAAAATCCCCTTGCGCCTTCTCTTTATTTCATGCGTTGCGGC
GAAAGTTCAACATGACCCTTTTTGCGATTTTGCGATCTGACAGATGCATA
TATATGCTGTCGTGCGATGATATCAGTTTGATATGCTTTGTAAACTATAT
TGCGATCTGACCGATGCATATGTTTTTCGCTGGATGATATCAGTCTGATA
TGCTTCGTATACCTCTGTATGTATACCTATGTATACCTACGCCGTACAAT
ATCGGTATACTCTGCTTTGCACACCCTCGCCTGTATACTGCTGTACATAG
CTGAACTGCAGGTAAGCTATACTGCTGTGTCACCTCCCTATATTTCTATA
CTTCTGTATAAAGCTGAACTGCTGAACTGCAGGCATAGCGGCACTGCTGT
GTCATCTCCCTATATTTCTATACTGCTGTATAAAGCTGAACTGCTGAACT
GCAGGCATAGCGGCACTGCTGTGTCATCTACCTATATATCTATTCTGCTG
TATATAGCTGAACTGCAGGTTTAGCTGCACTGCAGGTCTGTTGTATATAG
CTGCACCGCAAGTTTAGACAGCTGCGTGCTGTGTCTTCTACCTACATATC
CACGGCGGCAAGCCTATGCTGCTATATATAGCTGCACTGCAAGGTCTATA
CTGCTGTATATAGCTGTACTGCGGTATATAATGCTGTCCCACCTGTGTCA
TCTACGTATGTATCTATACTGCTGTATATAGCTGAACTGCAGGTATAGCT
ATATTACACGGCCGCAAGCCTATGTTGCTATATCTAGCTTCACTGCAAGG
TCTATACTGCTTTAATAGCTCTACTACAGTTTATAATGCTGTACTGCGGT
ATATCTACCTATATAGCCGCACTGACTGTACTGTGGTACATCTACCTGCC
CCCGTATTGCAGCCATCATTTGAGCCGCCATCATTTGTGCCCCGTATTGC
AGCCATCATTGGGGCCGTCACCATTTGAGATTACGACCATTTTCGTTTCG
CCGCAGCCACCATATGACATGTACTTTTCCCCACTTGCCGCAGCCATCGT
AAGAGAGGCGTTTTTCCGTATTGCAGCCATCGTTTTGCCGCAGCCACCAT
AGGAGGTGTATTTTTCCCCACTTGCCGCAGCCATCGTATGAGATGCGTCC
CCTTTCGCCGCAGCCATCGTATGAGATGTGCTTCGCAGCCATCGTATGAG
ATGTGTTTTCCCACTTTAGCCGCAGCTATCGTATTTTCATTTCGCCGCAG
CCACCATCGTATGAGATGTGCTTTCCCACTTCAGCCGCAGCTACAGCAGT
ATCGTATTTTCATTTCGCCGCAGCCACCATATGAGGTGTAATTTTTGCCC
ACTTGCACCATCCATCGTTTAATTGTTTCCCACTTTGGCCACAGCCAGCG
GGGAAAAATGGGTTTCCCCAGTTTGCCGCAGGTTTCATATGAGAGAGCGT
TTTCATTTTCGCCGCAGCCATCGTATGAGATGCGCTTCTCCGCTTTGCTG
CAGCCATCATATGAAATGTGCACAGATGCTCCACTTTCATACATAAGAGA
TGTGCTTCTCCACTTGCCGCAGCCATCATATGAGATGTGCTTCCTTGCGT
TTCCTTTCGCCGTAGCCATCATATGAGATGTGCCCTTCCACGTTCGCTTG
CCGCAGTCATCATATGAGATGTGCTTTCCTTGTGTTCCATTTCGTGTTTC
TCCATTTTGCCGCAGTCACCATATGAGATGTGCTTTTCTACGTTCGCCGC
AGCCATCATATGAGATGTGCTTTTCCCCTTTCGCCGCAGTGATCATATGA
GATGTGCTTTTCCGCTTTCGCCGCAGCCATCATATGAGATGTGCTTTGCA
TTTTCGCCGCAGCCATCGTATGAGATTTGCTTTTCCGCTTCCTCTTTTGC
CGCAGCCATCATATGAGATGTGCTTTTGTATGATATGTATTTTCTCTTGC
CGCAGCCATCAGATGCGATGTGCCCTTCCGCCGCCGTCCTATGAGATGTG
TTTTCCTTGTGCCGCAGCCATCATATGAGCGGTGCTATCAGTTTCTTTCG
CTGCAGCCATCATATGCGATGTGCTCTTCCACCGGCACCCTATGAGATGT
GTTTCCTCGTGCCGCAGCCATCGATGGGCCCGCGTTTCACGGCCGCATGA
TTTCGCCGTCTGTTGCCAATACCAATTTGGACCATTTCCCTCTCTCGCTG
GTTGCCGGTGTTTTGTTTCCGCTGCGCGCTGCAGATGAGTCCGCTTGTCA
CCACGGCGCTCACCGTCCTTCGGAACGAGTCGAACACGGAAGATTGGCTT
ACTTTATCACAACACCTCAACGCCCTTGTCAGGAAATCCTTTACACTTGG
TATCCTCGCAGATCGTGAACTCCTGGACCAACTCCAGTTTCATGGAGACA
TTATTGAAGAAGGAGGACACCCAACCGCCGTTTTGCGCGTCTTCTCCGAG
ATGCTTCCGAACAAGCGCCACGTCGCGGGAGACCACCTTTCGGGACCACG
GAAAACTCCGCGACGTCAAGAAGCTCCACAGCGCGTCAACCGCAGTGTCA
GGAGCAGCGCACGGATATCCTGGTCCGTCCCATTTAGCCGTCACCACGCC
GCACGTGTGGCGGCTTCGTCCACCGCTCCACAGCCGCGGGGTAGGGGTTC
GAGCGTTCGCGGTGGGGGCGGCCGCTACTCTTCTGCCGGAGCTTCGGTCT
CCCTGCCGTTCACTCTGTCAACTTTGCCGCCTGCCGCCACGGGCCGACGC
GCTGCCCATCAAGGAGGATCTACCCGCGGTAACGGGCGGGGTGCATCCGC
TCCACCCCCGCCCCCTTCCAACGTTGCGGCCGCCGACCGAAAAAGTACAC
GGACAAACTCCGGGAGAACCAGCAGGCCATGAGCTCTTCGCCCAACGCCG
ACTGTTGCCTCAACTACGCCGATAAGGGTCGCGTAGACCTACACCACCAT
AAAGAGTTTGCTTTCTCCCTGTGCCGCCGCTGCAAACGCGGAGGGCACCG
CGCGGTGGACTGCACCTTTCCCCCTTACCGCGGTTGACCTCGTCGGTGAA
GGATCTTTGGACTGCCATTCCGGGTTCTGACACTTGCTCGAGCTGAGCTC
GTCGTTTTGGTGGGGTGTACTGCACTGTGTTTTTCTCCTGTGTTTTCCTC
CTGTGCGTTTCTAGCATAACGAACGGTGTGATGGGCTTTTCCTACCATAC
AGAACGGCGTGCCCGTGGATGTGATCCAAAGATTTTCGATTCCGTTCGCC
GCAACCGACTGTGGTGGATTTCCTTTTGCGCCGCAATCAGCCGAGATTGT
TTGCGGCAGCCGTCCAACGATTTTCGTTTAACTTTTGCCGAAAAATTGCG
TTTTCCCTTCGCGGCAACCGCCGAATGTGGGTCGTTTTCTTTTGGGGTGC
AGCGCTCACCCGAGATCTGCGTTAATTGTTCCGGCTGGTGGGTTCTCTTT
CGCCGCAGCCATGATAGGATCAGTTTCCTTGTTCCCTTTCGCTGTCGCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig196:3361..7510+

>mRNA_P-littoralis_Contig196.1.2 ID=mRNA_P-littoralis_Contig196.1.2|Name=mRNA_P-littoralis_Contig196.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1164bp|location=Sequence derived from alignment at P-littoralis_Contig196:3361..7510+ (Pylaiella littoralis U1_48)
ATGAAATTGGAGCCCTTGGTGACCCACGTGCAGCCTCTGGGGGGCGGCGT
GCCCTCCTTTTACCAGGCGTCAGCGCAGGCGTCGGATATCGACAGTGGGG
TGAGCGGCGAAGGGGCGGCCCAGTTTAGGGCCCGTCTGGCGAAGTCCGTC
GTTGCCGTGCGTCGTTCGTTTGGCCCTTTCCACCGGACTGCTGAAGGCGT
CGGGCAGGTGCGTTTTCCTCCCGACCGAGGCGGAAATCCAACACGGGCTG
GGGGGCACCAGCGGAGCGCCGCGTCCGCCGCGCCTCCAAAGCCCCTGCCG
GCTCCAACCGCGCCTGCCGCGCCGGCCGGAGCGTCTGCTGGAGCGTCTGC
GGACGCCGGCGTGGACCTGCTGGTCGCGCGCCTTCAGACCCTGTTGGCGC
TGCCAGCGACAGAAACGGCTGGCGCGGACGTTTTGGCTCCGGAGGACCAG
CGGGTGGTAAACTACTTCTCCCTTCAAGACAAGAATTTCGAGATGAGTCC
GCTTGTCACCACGGCGCTCACCGTCCTTCGGAACGAGTCGAACACGGAAG
ATTGGCTTACTTTATCACAACACCTCAACGCCCTTGTCAGGAAATCCTTT
ACACTTGGTATCCTCGCAGATCGTGAACTCCTGGACCAACTCCAGTTTCA
TGGAGACATTATTGAAGAAGGAGGACACCCAACCGCCGTTTTGCGCGTCT
TCTCCGAGATGCTTCCGAACAAGCGCCACGTCGCGGGAGACCACCTTTCG
GGACCACGGAAAACTCCGCGACGTCAAGAAGCTCCACAGCGCGTCAACCG
CAGTGTCAGGAGCAGCGCACGGATATCCTGGTCCGTCCCATTTAGCCGTC
ACCACGCCGCACGTGTGGCGGCTTCGTCCACCGCTCCACAGCCGCGGGGT
AGGGGTTCGAGCGTTCGCGGTGGGGGCGGCCGCTACTCTTCTGCCGGAGC
TTCGGTCTCCCTGCCGTTCACTCTGTCAACTTTGCCGCCTGCCGCCACGG
GCCGACGCGCTGCCCATCAAGGAGGATCTACCCGCGGTAACGGGCGGGGT
GCATCCGCTCCACCCCCGCCGCCGACCGAAAAAGTACACGGACAAACTCC
GGGAGAACCAGCAGGCCATGAGCTCTTCGCCCAACGCCGACTGTTGCCTC
AACTACGCCGATAA
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