mRNA_P-littoralis_Contig194.102.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig194.102.1
Unique NamemRNA_P-littoralis_Contig194.102.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig194.102.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 2.640e-94
Identity = 186/287 (64.81%), Postives = 211/287 (73.52%), Query Frame = 1 
Query:   67 SMPLPTRGAFLEANLPWGKRRRISGNLRWKM---GQRTRKV--------------FCAAEGRELVVYDLEDDSNAGLPPRARYLVMGVRSVKTGPNAMELDVTVADESELVTLGWPSNAGAAPGLPFIETRSVTLTAAGRHEHARWELALEEAQSWTECKEREALMEELELSLPFRETAFDHVQRCLPDATIENMLGVSAAKNNPGCVLKSMVFDAAEAAASA------GPLSSPELTGSAGPGLGFSRHASYSGXXXXXXXXXXXAWKLSGAPSSSFRGLLSIFDS 858
            + P P +G FLEA+LPWGKRRR+SGNLR K+   G+  R+V              FCAAEGRELVVYD E DSNAGLPPRARYLVMGVR++KTGPNA EL+VTVADESE+ +LGW   A   PG+ F+ETRSVTLTA+GRHEHARW LALEEAQSWTE KEREAL+EELELSLPFRE A +HV   LPD+TIE++LGVS A  NPGCVLKS+VFDAAEAAASA      GPLSSPELT  +                 XXXXXXXX  KL+ APS+S RGL S F+S
Sbjct:  350 ARPTPPQGPFLEAHLPWGKRRRMSGNLRLKISGGGRVARRVATSGGREWGVWGGVFCAAEGRELVVYDAESDSNAGLPPRARYLVMGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTASGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSTIEDILGVSTAMTNPGCVLKSVVFDAAEAAASAAEAAAPGPLSSPELTAGS-----------------XXXXXXXXTRKLTVAPSASLRGLFSFFES 619
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BLAST of mRNA_P-littoralis_Contig194.102.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 4.680e-50
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 1 
Query:  271 MGVRSVKTGPNAMELDVTVADESELVTLGWPSNAGAAPGLPFIETRSVTLTAAGRHEHARWELALEEAQSWTECKEREALMEELELSLPFRETAFDHVQRCLPDATIENMLGVSAAKNNPGCVLKS 648
            MGVR++KTGPNA EL+VTVADESE+ +LGW   A   PG+ F+ETRSVTLTA GRHEHARW LALEEAQSWTE KEREAL+EELELSLPFRE A +HV   LPD+ IE++LGVS A  NPGCVLKS
Sbjct:    1 MGVRALKTGPNAAELEVTVADESEVSSLGWRERASTGPGVAFVETRSVTLTAYGRHEHARWSLALEEAQSWTEKKEREALLEELELSLPFREYAIEHVHHRLPDSAIEDILGVSTAMTNPGCVLKS 126
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig194.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H8_9PHAE2.640e-9464.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB4_ECTSI4.680e-5073.81Cell surface protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig194contigP-littoralis_Contig194:279062..284185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size919
Hectar predicted targeting categoryother localisation
Exons5
Cds size915
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789934.4529977-CDS-P-littoralis_Contig194:279063..2793331680789934.4529977-CDS-P-littoralis_Contig194:279063..279333Pylaiella littoralis U1_48CDSP-littoralis_Contig194 279064..279333 -
1680789934.4730098-CDS-P-littoralis_Contig194:280263..2804041680789934.4730098-CDS-P-littoralis_Contig194:280263..280404Pylaiella littoralis U1_48CDSP-littoralis_Contig194 280264..280404 -
1680789934.4836526-CDS-P-littoralis_Contig194:281559..2817451680789934.4836526-CDS-P-littoralis_Contig194:281559..281745Pylaiella littoralis U1_48CDSP-littoralis_Contig194 281560..281745 -
1680789934.4917068-CDS-P-littoralis_Contig194:282483..2826281680789934.4917068-CDS-P-littoralis_Contig194:282483..282628Pylaiella littoralis U1_48CDSP-littoralis_Contig194 282484..282628 -
1680789934.5049133-CDS-P-littoralis_Contig194:284012..2841851680789934.5049133-CDS-P-littoralis_Contig194:284012..284185Pylaiella littoralis U1_48CDSP-littoralis_Contig194 284013..284185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig194.102.1prot_P-littoralis_Contig194.102.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig194 279064..284185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig194.102.1

>prot_P-littoralis_Contig194.102.1 ID=prot_P-littoralis_Contig194.102.1|Name=mRNA_P-littoralis_Contig194.102.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=305bp
AAGGGGGGGGGGGEGLGAGCAGSMPLPTRGAFLEANLPWGKRRRISGNLR
WKMGQRTRKVFCAAEGRELVVYDLEDDSNAGLPPRARYLVMGVRSVKTGP
NAMELDVTVADESELVTLGWPSNAGAAPGLPFIETRSVTLTAAGRHEHAR
WELALEEAQSWTECKEREALMEELELSLPFRETAFDHVQRCLPDATIENM
LGVSAAKNNPGCVLKSMVFDAAEAAASAGPLSSPELTGSAGPGLGFSRHA
SYSGGGGGGGGGSSSAWKLSGAPSSSFRGLLSIFDSSARSPQGDEASGGG
GGYVS
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mRNA from alignment at P-littoralis_Contig194:279062..284185-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig194.102.1 ID=mRNA_P-littoralis_Contig194.102.1|Name=mRNA_P-littoralis_Contig194.102.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5124bp|location=Sequence derived from alignment at P-littoralis_Contig194:279062..284185- (Pylaiella littoralis U1_48)
GCGGCAGGAGGAGGAGGAGGAGGAGGCGGGGGCGGGGGCGAGGGTCTTGG
CGCGGGATGTGCCGGGAGCATGCCGCTGCCGACGCGTGGCGCGTTCCTCG
AGGCGAACCTGCCGTGGGGCAAGAGGAGACGAATATCTGGGAATCTTCGG
TGGAAAATGGGTCAGAGGACCAGGCAAGTTGACGGCGGGTGTGACGATTA
CAATATTATTTGATTTGATTTGACAGCGCTGCTGCCCCCCTCCACCCCCC
TCCCTCCCTCGTTTTGAGGCATTCTTGGGGCGATGCAGCCCACCCGCCCT
TCGTACGACTCGCCGAACACAATCGCTGCTGTTATTGTTGTTGTTGTTGT
TGTTGCTGTTCGTGGACCCAAACTGTCGCCGTGGAAGTGGGAATCACAAA
CATGTAGTACGTGTTGGAACATGTAGTACGTGTTGGCTACTCTTTCTGTG
TGCATGCTTTTGGTAGCCTCCATCTATGCACGAGCAGTACCAGCGTCTGT
GTAACTTTCTGGCTACAATGTGGAGCGCACGCTTTGGTAGTCTCCATGTA
TGTACTGTACAGGTTTCTGTGTACCTTCTGGCTGTACATTCATTTGTACC
TTCTGCGGGCGCATCGACGTAGCAGACGGCGACAGTGGGCACGCGCCTTC
GTCTTGCCGTTCTACTGAAGAAGAAAAACGACACACGAAACCGACCACCC
CCGCGTCTTTTCCCGAATGAAATTATTTTCGCTCTGGATGAACGACATAA
AATAAACGTGCACATGTATCATGGTCCAGCAGATCAGATGGTTCAAATGA
GATCTATCTACAGCACTGCTGTAGATCGTTTACGAATTGAGATCGTGATG
GACTAGACGGTGCAAATGGTCTGGATATTATGTCATATGATATTTTCAGT
TCAAGAACCTTTGATCAAATGTTGTAAACTATCCAGATCATGATCTCCGA
CGACGCGTGTGCCGGTAAATGTGCGTGCCATTTGCATTACGACGACGATT
ATATCTAAATAGTGTACCATTTTGTGTTGATAAAAAAAAAACTCACGCAT
CATGATCGAAAATCGCCTCTTTTTCCCTCCACTCCTCATTTCCTTCCTCC
CTGCGTGTTGCATCAGTTGTATCGTACATGTGAGTCGTGATCATGGTACG
GTACGATGCCCTCCGTTTCGTTTGATCTTCGACTGGTGATGATGTACTTC
GGGTAGAGTCTGTACGATTGGAGAATGAGAAGTTGGAAACGAAAGAAATC
TCACCAATGCTGAACAACAACAGAGAAGAGAAACAGCACCAGCAGCGTGA
AAACTTTTGTTTTAGGTCGACCATTGATACCAAATGATCGTGATAACTAA
CTAACTGGTGCACAGCAGTGGGTATACAAGTATGATGATATGATGGAGGG
AGACTGTCTTGACCCGTCATTGCCGTTCTCTCGCCCCTGCATGTATGGGA
CGCGCGATGCCTATACCTTTGCTGCTGCTGCTGCTGCTGCTTCCGCCGCC
GCCGCCGCTGCACGATGATGATGATGGATGATGATTGACATCAATCGCGT
CGAGCAGGAAGGTATTTTGCGCCGCCGAAGGCCGAGAGCTGGTCGTGTAC
GACTTGGAGGACGACTCCAACGCCGGGCTGCCGCCGCGGGCACGGTACCT
CGTCATGGGCGTGCGTTCCGTCAAAACGGGCCCCAACGCCATGGAACTGG
ACGTGCGTTAATATTGATCGAAACTTGGAAGCTCACACAATTCCGTTGTA
CAAGTAGCGTATACAAGTACTTCGTACGAAATAGTCGATTTTTTCGGTCA
TGATATACGAAGTACGTAGTATGAATGCAAGACGTATTAATCTGTCTGCG
TTTGTTTTCCTCGTCAAACCTGTAAAAAAGTTTCCTCTTGAGCATTACGC
AGTCTCGAAGCCTGGTGTATATACATACTTCGTGTATTTGTGGTAGCGTT
GTGTGATCTTGGGTCCGTTTTGGTTTGCCGGAGTTTCCTCGTTGTACCTT
TAATGGGTTGATGGGGTCTCCCGCATATTATATACTGTACTCCTTTTGGG
GCAAACAGCCTGTGACCACGGAAATCGTCCATGATCGGAGGGGTACGGAC
ATTAGAAGGTACTGAGGAGAGATCGGGATGGTTTTCAATGTGAAGACAGC
ACACACAGAGAGTTAGTGGGAAAAAAGACAACAACAAAAAGTTCCGACTG
ATTAAATGCAAACATCTCCGCCTTACCATACTGCACGCAAATACTGGTAT
CTGTACGCATGTCGCATTGCGTTGCGGAATTGTCACGTACTTCGTATGTG
TATTATACTTGTTCTTGCGTTCGAGCGGCAGACGGCTTGATTTTTTTTTT
TCGATTCCTGCTGTTGTTCTGTGTTCGGGGCACCGCGGTTGATTTCGGCG
GGGGGCGGCGGGCGGGGGGGGTCACACAACAACGTAACAGGTAACCGTTG
CGGACGAGTCGGAGCTCGTGACGCTAGGGTGGCCTAGCAACGCCGGGGCG
GCTCCGGGCCTCCCCTTCATCGAGACCCGCTCGGTGACGCTCACAGCTGC
GGGAAGGCACGAGCACGCGCGCTGGGAGCTGGCTTTGGAAGAGGCCCAGA
GCTGGACGGAGTGCAAAGAGAGAGAGGTTCGTTTTGGGTAGCAAAGAGCA
AGCGAGAGACAGAGTTTGAGGAGAAAGCAAGAGGGTGTGTATCGCATGCA
CAGCGGCAAAAAGGGGAGGTCCGGCGAAGCTGGCTGCTGCTGATGAGACA
ATGAACGTCTGTCGGGCAAAAGTCCGGCTGTCAGACAATGTCTTGGCCGT
TTTTTCTTTTCCGGCATTTTTCTTTTTGAGGGGGAGGAGGGGGGGGATGA
GACAGATCATCACCGCACGCACGCGCGCACGCACACACACACGTCGCGAT
ACGTCACGTCACGATACGTCACGGCACGAAACGTGACTGCTGCTCTGCTG
TTTATTTCTTGTTTGTTTTCGTCGGTGAGTGTGAACGGGATCGAAAGCAG
CGGCAGGCAGCCCAGCCCAGCCCAGCCCAGCCCGTGTTGTGGATATCATT
GAGTACCCCCACACCAAAATGGGCTTTGCAAGCTCTTTTTTTAAGTATCA
ATGGGTTTGCTACGGCTATACCTTCTGTTCGTCCGCGAGGTATGGTGATG
TGTGTGTGTGTGTGTGTGTGCTTGTGCTTGTGCTTGTGCCTTCACTGCAT
TCCAGATGACGGCACCCTTCGACTGCCGGGTGTGGTGTGCGCTTTCAGTG
CATTCCAAATGACAGCACCTTCGGCCTTCGATCCGGCCGGCGGCTGAGGG
GATTGTCTCCCCCCTTTAACAAAAAAACAAAGCACACACACACATTTATA
AGGACCCATGGACATCCCAAAAGGCATTTTGTTCTGCCTGCTGCTTTACT
TATTATTTATTCGAGTTGAAAAGGTGGGCGCATGTATGTGATGCTGTATG
ATGCTGCGTGTACGATTTTTTTGTTTCAGTGCCTTTTTGTCACACAGCAT
CAATCGAAAATGTGTGTTTCTCCTCATCCTCATATGATATCGAACCCTCA
ACCTTAACAAACATAAAAAATGCCTCCCTTCCTGTCTGCCTGTCTGGCTG
TCTTCCTGTCTGTGGGCCTGTCGGCCTGCCTGCCTGCCTCCCCGAATGTG
TATGTGTATGTGTACGTGTCTTGTGTCTGTTTCTGTTTCTGTTTCTGTCT
GTTCTGTTTTGGTCTGGTCTGGTCTGGTCTGGTCTGTTCTGGCCTCGTGG
CTGCCTGCACAACAATACCTACACCTGGCAGGCGTTGATGGAGGAGCTGG
AACTGTCTCTCCCGTTCCGCGAGACCGCCTTCGACCACGTCCAGCGCTGC
CTGCCGGATGCCACGATAGAGAACATGCTCGGCGTGTCCGCGGCCAAGAA
CAATCCCGGATGTGTCCTCAAGGTGACTTTCTTTTTTGTTTTTCTGTTTT
CACAAGCGCGACGAGTATCATGCTCGTGATGTTTTATTTTTCTTCCGTGC
GTTGGTTGCGCACGTGTCATAGCTTACGGTGCGCTCGCTCGATCGTCCAG
ACCTTCGCCCACAGAAAAATCCGATCTGTGTCTTGTCTGAATCGCGGTGC
CGTTCTGTAGGATGGCTACGTGGCTTTGCCAAGGGTATGATTTGTATCCG
TGGAGCTGCTGCTGTGTTGAGCTAGCCGCGCCGGGGATATGTGGTGGTTG
TCTCTAGGTCGAGGACAAAGTGCTGTGTCCGTCTCTTGATGAAAACGTTC
GTTCGTGGTGTGGTGTGGAATACGTTGTTATGCATGTCCGGGAAAGCTGC
TTTATTTTGTGACGCCTTGGGCAGCTCTGTAGGTCTTCCAGCAAGCACTT
TTGGAAACCACGACTGCTGTACAGGCACCTCTTTCGTTGGATCCACACCC
GCCCCTGTTTGAGCGTGTTCAAAATTGAAGGATTGCCGCACGTTTGACAT
GCTGCGACTTCTGTACCGCTGCTTCCAGTCTTTTCTGTTTAGCCTGGTTC
CTGGCATGCGCCTCGTGAGCAACGTCACCGATGTTTCTAAGTTTTCTGGT
ACATGATGGGTGTCTACGTCTGTCGTCTGCCGTTCTACCTTTATGTGCTC
CTCTCCAGTCCATTCCCATCCCATCCAATTCCTACCCACCCCATCCCGCA
TCCCATCCCACCCCATCCCGTCCCATCCCAACTCAACCCAACCCAAGTCA
TCGAATCCAATCCCATACCAACCATCCCATGCCGTACTAATCCACCCCAA
GCCACCTCATCTTATCGCACCCCACCACATCCCACCCCACCCCATCCCAA
CCCATCCCAACCCATCCCAACCTAACATTTCTTACCCGCGCAATATGATA
AGAGCATGGTTTTCGATGCCGCGGAAGCGGCAGCCTCGGCCGGGCCTCTG
AGCTCTCCGGAGCTGACGGGGAGCGCGGGGCCTGGCTTGGGTTTCAGTCG
TCACGCGAGCTACAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCAGCAGCA
GCGCGTGGAAGCTCTCCGGCGCTCCTAGCTCGTCCTTCCGAGGCCTGCTC
TCGATCTTCGACTCGTCGGCCCGGTCGCCGCAAGGGGACGAAGCGAGCGG
GGGAGGGGGGGGCTACGTCTCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig194:279062..284185-

>mRNA_P-littoralis_Contig194.102.1 ID=mRNA_P-littoralis_Contig194.102.1|Name=mRNA_P-littoralis_Contig194.102.1|organism=Pylaiella littoralis U1_48|type=CDS|length=915bp|location=Sequence derived from alignment at P-littoralis_Contig194:279062..284185- (Pylaiella littoralis U1_48)
GCGGCAGGAGGAGGAGGAGGAGGAGGCGGGGGCGGGGGCGAGGGTCTTGG
CGCGGGATGTGCCGGGAGCATGCCGCTGCCGACGCGTGGCGCGTTCCTCG
AGGCGAACCTGCCGTGGGGCAAGAGGAGACGAATATCTGGGAATCTTCGG
TGGAAAATGGGTCAGAGGACCAGGAAGGTATTTTGCGCCGCCGAAGGCCG
AGAGCTGGTCGTGTACGACTTGGAGGACGACTCCAACGCCGGGCTGCCGC
CGCGGGCACGGTACCTCGTCATGGGCGTGCGTTCCGTCAAAACGGGCCCC
AACGCCATGGAACTGGACGTAACCGTTGCGGACGAGTCGGAGCTCGTGAC
GCTAGGGTGGCCTAGCAACGCCGGGGCGGCTCCGGGCCTCCCCTTCATCG
AGACCCGCTCGGTGACGCTCACAGCTGCGGGAAGGCACGAGCACGCGCGC
TGGGAGCTGGCTTTGGAAGAGGCCCAGAGCTGGACGGAGTGCAAAGAGAG
AGAGGCGTTGATGGAGGAGCTGGAACTGTCTCTCCCGTTCCGCGAGACCG
CCTTCGACCACGTCCAGCGCTGCCTGCCGGATGCCACGATAGAGAACATG
CTCGGCGTGTCCGCGGCCAAGAACAATCCCGGATGTGTCCTCAAGAGCAT
GGTTTTCGATGCCGCGGAAGCGGCAGCCTCGGCCGGGCCTCTGAGCTCTC
CGGAGCTGACGGGGAGCGCGGGGCCTGGCTTGGGTTTCAGTCGTCACGCG
AGCTACAGCGGCGGCGGCGGCGGCGGCGGTGGCGGCAGCAGCAGCGCGTG
GAAGCTCTCCGGCGCTCCTAGCTCGTCCTTCCGAGGCCTGCTCTCGATCT
TCGACTCGTCGGCCCGGTCGCCGCAAGGGGACGAAGCGAGCGGGGGAGGG
GGGGGCTACGTCTCT
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