mRNA_P-littoralis_Contig19.155.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig19.155.1
Unique NamemRNA_P-littoralis_Contig19.155.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig19.155.1 vs. uniprot
Match: A0A6H5JND2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.820e-10
Identity = 58/159 (36.48%), Postives = 74/159 (46.54%), Query Frame = 3 
Query:  111 MGEPVIGSIVCGSIALVMMFWNWRMIQDQKHRGRICAKEAASAARARAKTQQLAMTNNAHHHTLQTHALSSESLAEAAAFAP-----------AAAPSKSSHHVVKLESLPEWDESSPEEEENEEHTIN-KEVRERFETATMSPPLSSARSRSGTTFFF 551
            MGEP+I SI CGSIA+VM+ WNWRM + QK RG+ CA                                                        A  PS+    V+KLESLPE +ES+ + ++ +   +   + RER ETA +SPPLSS RSRSGT  FF
Sbjct:    1 MGEPIIASITCGSIAVVMLLWNWRMYELQKTRGKACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAICPSR----VIKLESLPECNESTSQSQDKQSPLLLVTKPRERLETAPLSPPLSSTRSRSGTGCFF 155
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig19.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JND2_9PHAE2.820e-1036.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig19contigP-littoralis_Contig19:732884..739425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1289
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_000670.1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789912.6044238-UTR-P-littoralis_Contig19:732883..7329931680789912.6044238-UTR-P-littoralis_Contig19:732883..732993Pylaiella littoralis U1_48UTRP-littoralis_Contig19 732884..732993 +
1680789912.6460896-UTR-P-littoralis_Contig19:738753..7394251680789912.6460896-UTR-P-littoralis_Contig19:738753..739425Pylaiella littoralis U1_48UTRP-littoralis_Contig19 738754..739425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789912.617704-CDS-P-littoralis_Contig19:732993..7334391680789912.617704-CDS-P-littoralis_Contig19:732993..733439Pylaiella littoralis U1_48CDSP-littoralis_Contig19 732994..733439 +
1680789912.635545-CDS-P-littoralis_Contig19:738692..7387531680789912.635545-CDS-P-littoralis_Contig19:738692..738753Pylaiella littoralis U1_48CDSP-littoralis_Contig19 738693..738753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig19.155.1prot_P-littoralis_Contig19.155.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig19 732994..738753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig19.155.1

>prot_P-littoralis_Contig19.155.1 ID=prot_P-littoralis_Contig19.155.1|Name=mRNA_P-littoralis_Contig19.155.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MGEPVIGSIVCGSIALVMMFWNWRMIQDQKHRGRICAKEAASAARARAKT
QQLAMTNNAHHHTLQTHALSSESLAEAAAFAPAAAPSKSSHHVVKLESLP
EWDESSPEEEENEEHTINKEVRERFETATMSPPLSSARSRSGTTFFFDGS
DGDSAVDHHRRSLEAVSS*
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mRNA from alignment at P-littoralis_Contig19:732884..739425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig19.155.1 ID=mRNA_P-littoralis_Contig19.155.1|Name=mRNA_P-littoralis_Contig19.155.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6542bp|location=Sequence derived from alignment at P-littoralis_Contig19:732884..739425+ (Pylaiella littoralis U1_48)
GGTTGTTGTCACGGTCACAAAATCACAATCCACCAACACGCGGTGCTGAG
ACAGAAGGAGAGAGCCGAAGTTTACAAAACACACGCGAAGAAAAACAACA
AGACAGGAACATGGGAGAGCCAGTGATCGGAAGCATTGTGTGCGGATCCA
TCGCGCTGGTGATGATGTTCTGGAATTGGCGCATGATTCAAGATCAGAAA
CACCGGGGAAGGATCTGTGCGAAAGAAGCGGCGTCTGCTGCACGAGCCAG
AGCAAAGACACAGCAATTGGCGATGACCAACAACGCACACCACCACACAC
TACAAACGCACGCGCTGTCTAGCGAAAGCTTGGCAGAAGCAGCGGCCTTC
GCCCCCGCTGCCGCGCCCTCGAAGTCTTCGCACCACGTCGTCAAGCTGGA
GTCGCTGCCCGAGTGGGACGAGAGCTCTCCAGAAGAAGAGGAGAACGAAG
AACATACGATCAACAAGGAGGTTCGCGAGAGGTTCGAGACAGCGACTATG
TCGCCACCGTTGTCTTCAGCACGGTCACGCTCAGGGACCACGTTCTTTTT
CGATGGGTGAGTGAACCAGTGTTTGTTGCCGATCGCCTGTCGTATGTGTG
CACGCTGCGTGCGTCGTGCGTGCGTGCAGTCAGGTCCCAGCGACTGCTGC
TGCGTCCGGTCCGGTTGTTTGTTCGAGTTCCCGCGATTTAGGCATGTTCT
TCCTGCTGGGTACCATCTCAGGAAAAATGTGCTCCGAAATGCATCCTCTT
GTACTTGCACTTTTTATTTTTTATTTTTTATTTTCAAAGATCCAACGACT
AAAATATTGCGTTCGTCTTTGTATTTGTGTATATACAATAATTGTTTGCT
CTTGCGGAATAACTCTCTTTTTCTTTAGCTCGTATTGTGTGGCGGTTGAT
CGTCTCTTGTCTCCTCTGCACGCCACTCGCACGTTGTACTTGTACACTTG
TACGTGTACCGCACTCCCTCTCACACAACAAGCAGTGCGGCAGTATTAGA
TGCAATGCGATGATTCGCGTTGGCAGCAGCAGCAGCAACAACAGCAGTGA
GTGGTTCACGCCAGCAGCGGCGAATAAACTTCGAGGACTACTGTAGTGCT
GTCCCACCCACAGCTTGTGGCTATTTTATTTTGGCGCGCATTTTTCTTTT
TTCGGCCCTGCTTTCTTTACCGTTGGAGGATGAAACAGTAATGAGTGGCG
TAAACAAATTCGGGCGCGCTGCAGCTGTGTCTGTGTCTATCAACTGAAAA
GCACATCTGGATGTGTGTCTTGACATGATGTGTGGAAGTCGTTTCGAAGA
TTGATTGCAGCGAAGCAAAGTCGGTCGTAGCCAGTAAACAACTCTTACAT
ACGTACTCAATACAAGTACAAGTATACGAGAAGAGAAACGAAATTCGACT
TGCAAACAAAAAAAATAAAAACATAAAAAACATATAAAAGTCGAATGTTG
TCCAAAGTCCCTGTGCTATAAACAAGGCTCAAGGGGAAAAAGGGACGGGG
GCAACGGCAAGCATCCCAGACGTAGGGTGAACAGAAAAAAAAATGGTTTC
AGGTTCGACCTCTTCCTCGTATTCGAATTGTTCGTATAATATGATACCTG
GTAGCTGGTACTTCGTACCTACACAGCAATTAACAGTAGGTGTGACCCTC
GGGTGTTGTCCGCTCCGCCCATCCACTTGTAGTTCGTACCCGAAAAGGTG
TACACATGCACACAACAACACACTCGCACGCACACCCTGCCCACCCTGCA
TCGTCGCGTCTGCAAGAGCTACGCCGTAACAGCAGAGTAGCGTCCAGTCG
AAAGCGGTGTCCCTCGCTCGGGCGGGCAATTATTTATTTACTTGCCCTGA
GTGCTCTATTTCAGACCACCCTGTGGATATTTATTCCAGCACAAACCGTA
ACCGTTGCACAAGTACAGCAGCTACATACCGAGACATATTTTTTTTTTTG
TGAGAGGAAATCTGGTGCCGACCACCCTCTGCTCTCTCTGCTCTCGGTCA
TACCGCTCTTTGACCCGCTGGTATACATGATCTCCTCCAACTGCTGGTAT
TTTCTTCAGCTCTGTGATCATCATCACCAGGGCAGCTGAACCCGAACCGA
AACAGAGAAACTACACATTCTCGCCCAATCTCGCGATACGTGTTGACTGG
TATAATGCGTACCTGTCATTTACGAAGTACATGGCAAAAACATGCCCTTG
GCATCAAGTGTGACACTTCGAAAAAGTACAGTATGTACTTCGAAGTTCAT
GTATCATAAAGACGAAAGTGCTTCAAAATGCGACGTTTGAGGTCTCCTCC
TCCCCCCATCCACTCTGTGCTGCAGTATACAAAGTACAGCAGCATACCGT
ACTCTAAAAGCAAAACAGGCTCATGCCTTGGGTACGTTTACGCCGAACCT
CATCTCGAGGTCTTCTGTAGTGAGTTCGAAGCTCGATCCCGACTACACCA
GTTTGATATGTACATCTGAAGTATCACATTTACATACACTTGAAAACCAA
GGAGTAGACATCGGTAGTTTCGTTCGAAAAAAAATCGCCAAATTCGATCA
AAAAAACATATAAGGAGAAAGTCAACGAGGCCAAGGATGGTCGAACTCTC
TAGCGAGAGATAACGTAGATATATATGCACGAGACTTGTCGTATGATACG
TAGGAAAAAATGGAGATGAGCATACCGCAGAATAAATACTTTTTGCAATC
CCTCTCGACCTTGTTGACCCCCTCGTATGACCCCCGGCTGTATTGCTGTT
GCCAGGAGATGTTCAACGATTTTTTCTCATTTAAGATGACCTCGGAAGTC
TACACCTTGGCCCTATATATACCAAGCATACATGATATCGTGCTACAAAA
AAGGAGGAAAAACAAAAACGAATGGGCAGACGCCAAAAAACGGTATACCG
CCTGGTTTCTTCGAGCCCCGTTCGGGTCGCTGATTGGCTGATTAAGCCCC
GTAACGCTTTTTGGCATCAGCAGTCGGCGGTACATCACATCTGGGCTTCT
CAGGTCGACTTTCGCCGCTTTTTGGCGCGACGCGTACCGCTTGCTGGCGG
GATATATCCCAGGCCATTCGCCCAACAGCCTTTGACACTTCCAAGTCACG
CATCAACCAAGGAAGCCACGTCACCCAGTTACACAACCCCCGGCCCTCGG
TGAAGAACCTCTCCGCGCATTTCCTCTGCACCCGACTCCTTGGGGACCCT
TTAGCTTGCTGCAATGCGTGCTTCTGTGGTGTGTGTGTTTGTGTGTGTGT
GTTTGTGTGTGTGTTAATCCCATTTATTATGGGCACCGGTCTACACCTTT
CGGTATGAAGTGGGTGCACCAGCCGTCGTCGCACAAAAGGAAGATCACAC
ACGAGCTACTTCGAAGTATTTGTTTTTGCGGTGCTCGGCAAGAAAGCTGG
CAGGAAGACCAGAACAACCACTGCTGCTGCTGTCAAACCAGAACATATAG
TAGTAGACCATGTGAGAACGCGACTCACACCCCCGGCACAAATGCACACA
CCGTGACTGCCGCTTGAGGCTCTGAAAAATAACCGTCACGGTTGTTGGCA
ACAAATAACTAGCATATCCGGACCTACCAATACGAAAAGCAAGGTATATC
ATCCATGCATGTATCCGAGTCTGCCAAATCAGGTGCATGCCATCGTGCGT
GTATGCGTGTGGTTTGTTTGCGGTTACGCGAGTTTTGCCCGTGGTCGGTC
TTTTATTATGGTAAGGGGCAGCACCGTGTGTGTGTGTGTTTGTGTGTTTG
TGTCGGGGGTGGGTGTGAGTCGCGTTTCACATGGGTCCTCTAAAACACCG
CTCTTCTTTTTCTGGTTTTACAGCAGCAGCACAGCAACAGTGGTAATTGT
TCTGGCTTTCTTGCCAGAGCACCGCAGAGGCACGCATCTGCTTGCAGCAA
GCTGTAAGTCCCGAAGGGGTCGGGTGTAGAGAAAACGTGCGGAGAACGTG
CCGAGAGGTTCTTCACCGACCAAGGGCCGAGGGGCTCTGTAATTAGAGGT
GACGTGACTTCCTTGGTTGATGCGTGGTTTGGAAGTGTCAAAGGCTGTTG
GGCGAATGGCCTGGGGAATATTCCGCCAGAAAGCGGTACGTGGTTCGCCA
AAAAGCGGTGACAGCCGACCTGAGAAGCCCAGATGTGATGAACCGCCGAC
TGCTGGTGCCAAAACGCGTTACGAGGCCTCATCAGCCAATCAGCGACGCG
AACGGGGCTCAAATGCCTAGGTGTATTTTGGTCTACCGCTTTGTGGCGCG
GAAACCAGGCGGTATACCGCTTTTTGGCGTCTGCCCAAAACGAATTGTTG
TTGTTGTTGTTGTTGTTGTTGTTTTAACATCAAAAACCATTCCGATCTCT
CCTCAGTACCTTCTAATGTCCGTACTCCACCGATCAGGTACGATTTCCGT
GGTCACAGGCTAGTTGCCCCACAAGAGTGTATAGTACTCCGGAGATCCCC
TCAGTCCACCAAATGAAGGCACGACAAGGAAACTCCGGCAAAAACGAAAG
AAATAAAATACTTCGTAGGCCATACACAAAAAATGTGCAAGATTGACTGC
ATGCAGTAAATCTTGGGTTTCGGGATCGGGACTTAATTGCACTGGAAGGG
GGAGGCGGTTCGTGGCACTACTGGAGGTAGACACGCGTTGATGTAGACAT
GGCACTGGAGGTGTATACGTCATATAACTTGTCTAGAGTCGTAGGGGGGC
AGTTGTCTGTCATGTCAGCCCGTGTGGAAAAGCGGCGAAACACGGCCGGG
AAACAGCGGTGTAGATTTCGTAGAAACGACGCTTTATTTATATGAAACTT
CGAAACATGCCAACAGCACAAATGTAAATCTTGAACACTCAACACATGAT
GTAACGTGTGTTACACAAGACGACCAACACATTGTCTTGTTGAGCCCGAT
ACCCCCTCAGGGGAGCTGCAACGTACTGCACATTATCTGATGAGTTATAG
AAACACTGGTAGATGAACCTTATTCTTTGCGTTCGTTGCAATATCTACTC
CAGACCCTCGTCTGGAGAGAGGCGAATACACATTGATGTGTTTGGAAGTC
TGAAAAATAAGTAACAGAATCATGAGCGTACAGCAGTAGCGCGAACAAAA
AAGAGGCGTAGATGCCGCCCTACCATGAGGTTTGTTGCTTTTCTATTCTA
GATCCTCCTCGGCAGCGAGGCGATAACACTGATGATGATGCCTTCTGTTA
GAGAAATAAAGAACTTCATGTATAAAAAACGTCAGGTGAGGGCGGGGCTT
CCACAATACACGAAGGAGGGGGAGGGTACCGCACTTAAATTCGGTGGCCG
TGTCACGAATTTGTCCGCATGGTTTGCGTGCTATTCCCCGTACGCTCCTC
AGCAGCGGTTACGATCGGGTGTGACTTCAGCGAAATATTGCCCACTGGGA
CGGGGCTCGAGAGGGGCATGCAGGAGAATATTCTTGCTCCCTCGTTTCGA
CGTATTTATCCCCAGCCAGTTTCGCATGCTGTGCTGCTGCTGCTTTGATT
GGCGCTGCAAGTGCTACAGCTTCATCACCAACGCACACGAACCGAACCAT
TGTTCGCGTTTTACAACCTTAAGTAAATACGAGGCACGTTCGCACACCAC
ACGTACGTACTTGTATGACACTGTGCGTTTTGTTCGTTGCCGTTTCACAT
AACCCACCCATTTGTGAATCTACCTCTATGCTATGCATCAGATGATGGCT
TGACTCACGATTGGGTTTCTTTCCTCCCTCCTCTTGCCCTCTCGTTGTTT
CCTTGCTGCTTGCTGGCCTTTTTGTCGGTGCTATATACGCTGCATGCCCT
GTCGTACAGGTCCGACGGAGATTCAGCGGTCGACCACCACCGCCGGTCCC
TCGAAGCGGTTTCTTCTTGAAGCAGCGGCAAAATCGTTACCTTTTGGATT
GTACCGAATCGGTACAAGTACGTGCGTATGATACGGCGGTGGTAGCTCCT
CGCGGAACCTTTTGGGTTGTACCGATGGTACAAAAACGTACGTACGAATA
AAAACGGTGTTAGCTCCTCGTCGAAGCAGAAGAGCGATGGCGGCAGCAGC
GGTGCGGCACAGACTATCTCGGGGGTGATACCCCCCCCCCCCACGTCTTC
CGCCCAAAGGGCCACACCCATTAACGATGTTGGGATTTAGGGTTGATTAT
CATGTACAGAGCAGAAAATGCAGCGGCGAGGCAATCCCCTGACGCCGCGA
GAGCGAGTCCATCACGCCTATTTATAGCTGCAGCAGTGGTCCGTGTGTTG
CGGGGTGGGAGGGCGGCGACTTCCTTCACACCCCCGCCCCACCCCGCCAG
CTTGAGGACATGAATCATCATGAAGCCTTGCCGTGTCGTGTCCTGCTCGC
TGTGTAGGTAGCTATCTAGCTGGCTTGGTTTGGGGGGCGGTGTGGGGGAA
AAGAAAAAAACAACTGAAGACCAAGACGACGTATTGTTTGTTTGGTAACT
GCTTAAGCGAAGGGAAAAAAATTGTTCAGGGAAAATAAGTTCTTGCGTCA
ATGGAATTGCGTAGCGTCCACCGTGACCAGAGCCGCTGGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig19:732884..739425+

>mRNA_P-littoralis_Contig19.155.1 ID=mRNA_P-littoralis_Contig19.155.1|Name=mRNA_P-littoralis_Contig19.155.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig19:732884..739425+ (Pylaiella littoralis U1_48)
ATGGGAGAGCCAGTGATCGGAAGCATTGTGTGCGGATCCATCGCGCTGGT
GATGATGTTCTGGAATTGGCGCATGATTCAAGATCAGAAACACCGGGGAA
GGATCTGTGCGAAAGAAGCGGCGTCTGCTGCACGAGCCAGAGCAAAGACA
CAGCAATTGGCGATGACCAACAACGCACACCACCACACACTACAAACGCA
CGCGCTGTCTAGCGAAAGCTTGGCAGAAGCAGCGGCCTTCGCCCCCGCTG
CCGCGCCCTCGAAGTCTTCGCACCACGTCGTCAAGCTGGAGTCGCTGCCC
GAGTGGGACGAGAGCTCTCCAGAAGAAGAGGAGAACGAAGAACATACGAT
CAACAAGGAGGTTCGCGAGAGGTTCGAGACAGCGACTATGTCGCCACCGT
TGTCTTCAGCACGGTCACGCTCAGGGACCACGTTCTTTTTCGATGGGTCC
GACGGAGATTCAGCGGTCGACCACCACCGCCGGTCCCTCGAAGCGGTTTC
TTCTTGA
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