mRNA_P-littoralis_Contig188.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig188.62.1
Unique NamemRNA_P-littoralis_Contig188.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: D8LRX5_ECTSI (LigB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRX5_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 7.280e-138
Identity = 198/265 (74.72%), Postives = 216/265 (81.51%), Query Frame = 3
Query:  120 MKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPREKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAGFQRGEVIFDDFAMGGMSLACVGFWSSGSSSSISSG 914
            MKQID+T AAAQWYRTFTKKW+KP+AI+ VSAHWE RGAVKVTTG KHPL FDYYGFPDY YDLEYAPPG P LA RII++L A G  A+GD+ RG+DHG FIPLKLMYP+ADVPVVQVSLL GLD E HL++G  L  L  E DVLIV SGQATH   S +  YPPGKGAP+E+AFVDWLKETAAS  VTP+ER+RRLREWE DAPH RNAHPREEHLLPLHVAAGC GFQ G +IFDDFAMG MSLACVGFW  G       G
Sbjct:    1 MKQIDATSAAAQWYRTFTKKWAKPSAIVVVSAHWEGRGAVKVTTGEKHPLFFDYYGFPDYCYDLEYAPPGHPELARRIIELLEADGFNARGDDSRGYDHGTFIPLKLMYPDADVPVVQVSLLGGLDPEKHLKMGKTLKKLVDERDVLIVGSGQATHGRGSDHRPYPPGKGAPKEEAFVDWLKETAASPAVTPEERQRRLREWERDAPHGRNAHPREEHLLPLHVAAGCTGFQPGSIIFDDFAMGHMSLACVGFWPGGGEGEAKGG 265          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A836CEX8_9STRA (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX8_9STRA)

HSP 1 Score: 243 bits (621), Expect = 7.920e-72
Identity = 134/279 (48.03%), Postives = 171/279 (61.29%), Query Frame = 3
Query:   54 PTSLFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHP-LLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAP---REKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAGFQRGEVIFDDFAMGGMSLACVGF 878
            P S+F+SHGGGP F   E +G    ID     A  +R  +    KP  I+  +AHWE  G     TG   P L++DYYGFP  TY L Y  PG+P LA+ I+ +L+  G+ A+ + +RGFDHGVFIPLK++YP+ADVPVV +SL + LD   H+ +G AL  LA    VL+  SG ATHN      +   G+G P   R  AF+DWLK T     V+  ER RRL  W  +APH+R++HPREEHLLPLHVAAG AGF  GE++ D    GGMS+A   F
Sbjct:   12 PRSVFISHGGGPCFFY-EAAGPFSAIDKNSRVAADFRKLSTVLPKPKVIVICTAHWEADGPKIRVTGQPAPSLVYDYYGFPAETYKLTYPAPGDPQLAADIVALLKGAGISAELELERGFDHGVFIPLKMIYPDADVPVVAISLSSTLDPAFHISVGKALSGLA-GRGVLVFGSGMATHNLGMVRSAAAHGEGVPVEPRAGAFIDWLKATLGDG-VSAQERERRLLRWTEEAPHARHSHPREEHLLPLHVAAGAAGFAAGELVLDATVFGGMSMASFAF 287          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A496XGL0_9GAMM (Dioxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496XGL0_9GAMM)

HSP 1 Score: 216 bits (550), Expect = 7.650e-62
Identity = 122/268 (45.52%), Postives = 164/268 (61.19%), Query Frame = 3
Query:   63 LFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPREKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAGFQRGEVIFDDFAMGGMSLA 866
            LF+ HGGGP  L+ + +G    +D   A        T    +P+AI+ +SAHWEE G   +T+G    L++DYYGFPD  YD+EY   G+P LA RI  +L   G++A+ D+ RGFDHG+F+PLKLMYP A +P VQ+SL+  LD + H+ IG AL  L  +E+VLIV SG + HN   ++ S   G    + +AF DWL  T  ++ + P ER RRL EW  DAP +R  HPREEHLLPLHV  G +      V FDD  +G ++ A
Sbjct:    5 LFIPHGGGPLPLLGD-AGHQVMVDFLGA-------ITANLGQPSAILVISAHWEE-GVATITSGKSPSLIYDYYGFPDEAYDVEYPAAGDPILAERIFGLLEKAGIEARMDDHRGFDHGLFVPLKLMYPAASIPCVQLSLINNLDPQTHINIGKALSDLR-KENVLIVGSGLSFHNM-DAFLSKSDGVMDAKNRAFEDWLAHTCTNNNIPPPERERRLIEW-ADAPAARYCHPREEHLLPLHVCYGLSNSVAARV-FDDKVLGMLASA 259          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A2T6NDR8_9GAMM (Dioxygenase n=1 Tax=gamma proteobacterium symbiont of Ctena orbiculata TaxID=1968598 RepID=A0A2T6NDR8_9GAMM)

HSP 1 Score: 214 bits (545), Expect = 4.470e-61
Identity = 122/251 (48.61%), Postives = 162/251 (64.54%), Query Frame = 3
Query:   63 LFLSHGGGPGFLM-KEGSGMMKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPRE--KAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCA 806
            +FLSHGGGP  L+  EG   M       A A           KP+AII VSAHWEE  A  +T G K PL++DYYGFP  +Y +EY  PGEP+LA RI  +LR  G++A+ D+ RGFDHG+F+PLK+MYPEADVP VQ+SL+  LDS  H+RIG ALG L  ++++LI+ SG + HN  + +    P     R+  ++F  WL +T ++  +  DER +RL  W+ +APH+R  HPREEHLLPLH+  G A
Sbjct:    8 IFLSHGGGPMPLLGDEGHREMVACLREMAGAM---------DKPSAIIVVSAHWEEAVAT-ITAGEKPPLVYDYYGFPQESYSIEYPCPGEPSLAGRIQGMLRKAGMEAELDDQRGFDHGLFVPLKIMYPEADVPCVQLSLVNSLDSSHHIRIGQALGQLK-DDNLLIIGSGFSFHNMRAFFA---PDSAESRKMNESFEAWLIDTCSNDALQEDERIQRLNNWQ-NAPHARYCHPREEHLLPLHLCYGIA 243          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A3B9P8V8_9CHLR (Dioxygenase n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A3B9P8V8_9CHLR)

HSP 1 Score: 213 bits (543), Expect = 8.990e-61
Identity = 122/264 (46.21%), Postives = 163/264 (61.74%), Query Frame = 3
Query:   63 LFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHPLLF-DYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPREKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAGFQRGEVIFDDFAMG 851
            ++ SHGGGP  L+ +            A   + R   ++  KP AI+ +SAHWEE   V    GA +P +F DYYGFP+  Y++ Y  PG P+LA+ I + L   G+ +K +  RGFDHG+FIPL +MYPEAD+P +Q+SL  GL    H+ +G AL +L   E++L++ SG + HN  SS+  + P    PR  AF DWL ET  S  +  +ER  RL  WE+ APH+R  HPREEHLLPLHV AG AG +RG+VIFDD  MG
Sbjct:   10 VYFSHGGGPLPLLGDPGHQ--------AMVNFMRQLPEQLPKPEAILVISAHWEE--PVPTLLGAANPPMFYDYYGFPELAYEINYPAPGHPSLAAHIAETLENTGITSKINKTRGFDHGLFIPLSMMYPEADIPALQLSLRQGLSPAFHITLGKALQSLR-NENLLVIGSGFSFHNI-SSFFHHDPDMVNPRNNAFQDWLIETITSD-IDQEERESRLAAWES-APHARYCHPREEHLLPLHVCAGLAG-RRGQVIFDDLIMG 258          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A1J4QGR4_9GAMM (Dioxygenase n=1 Tax=Oceanisphaera psychrotolerans TaxID=1414654 RepID=A0A1J4QGR4_9GAMM)

HSP 1 Score: 213 bits (543), Expect = 1.050e-60
Identity = 118/250 (47.20%), Postives = 162/250 (64.80%), Query Frame = 3
Query:   63 LFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSY-PSYPPGKGAPREKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAG 809
            LF+SHGGGP  L+  G    +++       QW +    +  +P AI+ VSAHWE      +T GA+  L++DYYGFP  +Y+++Y  PGEPALA ++   L A G+ A+ D +RGFDHGVF+PLKLMYPEAD+P VQ+SL++ LD+E HL IG AL  L  + ++L++ SG + HN  + + P  P  K   R +AF  WL++T  +  +   ERRRRL  W++ APH+R  HPREEHLLPLHV  G AG
Sbjct:    8 LFISHGGGPLPLL--GDPDHREM------VQWLQDMAGRLRRPEAILIVSAHWEA-AVPTITAGARPGLIYDYYGFPPESYEIQYPCPGEPALAQQVQQALMAAGMPARLDAERGFDHGVFVPLKLMYPEADIPCVQLSLVSSLDAEQHLNIGRALQALDYD-NLLVIGSGFSFHNMQAFFTPGTPEIKA--RNQAFEAWLEDTCGNPRLEEAERRRRLIHWDS-APHARFCHPREEHLLPLHVCYGLAG 244          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: I7ZAX2_9GAMM (Catalytic LigB subunit of aromatic ring-opening dioxygenase n=1 Tax=Hydrocarboniphaga effusa AP103 TaxID=1172194 RepID=I7ZAX2_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 1.260e-60
Identity = 128/280 (45.71%), Postives = 166/280 (59.29%), Query Frame = 3
Query:   42 EHPRPTSLFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKK-WSKPAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPREKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAGFQRGEVIFDDFAMGGMSLACVGF 878
            E  R  +LF++HGGGP F M+         D+  +   W R  + +   KP A++ VSAHWE      VT   +  L++DYYGFP +TY+L+Y  PG+PALA  I+  L   GL A+ D +RGFDHGVF+PLKL+YP+AD+PVVQ+SL AGL+   HL +GAAL  L  E+ VLI+ SG + HN          G G      F  WL E     T  P+ R+ RLR+WE  AP +R AHPREEHLLPL VAAG AG   G+ +F +   G   +A  GF
Sbjct:    3 EASRLPTLFIAHGGGPCFFME-----WNPPDTWRSLEAWLRGLSVEVGDKPRALLVVSAHWEAE-RYSVTAHPQPSLIYDYYGFPQHTYELQYPAPGDPALAEEIVRRLGVAGLPAEIDRERGFDHGVFVPLKLIYPQADIPVVQLSLRAGLNPAEHLAVGAALAPLR-EQGVLIIGSGYSYHNMRGYG-----GAGQRPSIEFDRWLNEAL---TADPETRKERLRDWER-APSARAAHPREEHLLPLMVAAGAAGQDIGKRLFGELVFG---VATSGF 263          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A845FS38_9GAMM (Dioxygenase n=1 Tax=Pseudomaricurvus sp. HS19 TaxID=2692626 RepID=A0A845FS38_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 1.260e-60
Identity = 121/251 (48.21%), Postives = 160/251 (63.75%), Query Frame = 3
Query:   54 PTSLFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPREKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCA 806
            PT LFLSHGGGP  L+ + S   + +  TC  A           KP+AI+ +SAHWE R A  VT+GA   L++DYY FP+ +Y ++Y  PGEPALA+ +   L   G+    D  RGFDHG+F+PLK+MYP+A++P VQ+SL   LD E+HL IG AL TLA +E+VL++ SG + HN  + +    P   A R +AF DWL  T   +T+   ERR+RL +WE DAP +R  HPREEHLLPLH+  G A
Sbjct:    4 PTILFLSHGGGPMPLLGDPS-HAEMV--TCLQA-----IAADIPKPSAIVVISAHWETR-APCVTSGATPELIYDYYNFPEESYSIQYPCPGEPALATAVQQALTEQGIPCDADARRGFDHGLFVPLKIMYPQANIPCVQLSLSNSLDPELHLGIGEALQTLA-QENVLVIGSGFSFHNMKAFFAGNDPDVVA-RNQAFEDWLHSTCTDTTLDEGERRQRLHDWE-DAPQARFCHPREEHLLPLHICYGLA 242          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A0L0DII2_THETB (Extradiol ring-cleavage dioxygenase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DII2_THETB)

HSP 1 Score: 213 bits (543), Expect = 1.650e-60
Identity = 127/268 (47.39%), Postives = 164/268 (61.19%), Query Frame = 3
Query:   63 LFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKW------SKPAAIIAVSAHWEER----GAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPREKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAGFQRGEVIFD 836
            +F+ HGGGP F M++ +GMMK +    A A+W++    ++      +   A++ VSAHWE +    G  +V     + LLFDY GFP +TY L Y  PG+PALA RI+D+L A GL  +  +DRG DHGVF+PLKLM PEA++PVVQVSLL  LD+E HL +G AL  LA +E VLIV SG  TH S          K A  E AF  WL  T +    + D R+  L +WE+ AP +R AH REEHLLP+HV AG AG+   E I D
Sbjct:   14 VFVGHGGGPCFFMED-TGMMKGMGRGSAVARWFQGLMDEYYTDDERAAIKAVVVVSAHWEHKANTVGVYRVD--GPNSLLFDYSGFPPHTYQLTYPAPGDPALADRILDLLDAHGLAGEAVSDRGLDHGVFVPLKLMLPEAELPVVQVSLLGSLDAEAHLELGEALAPLA-DEGVLIVGSGFVTHGS---------SKKAQTE-AFEGWLTTTLSDECASADHRKAALIDWES-APFARRAHIREEHLLPVHVVAGAAGYIPAERIQD 266          
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Match: A0A7X8D0G4_9SPIR (Dioxygenase n=1 Tax=Treponema sp. TaxID=166 RepID=A0A7X8D0G4_9SPIR)

HSP 1 Score: 213 bits (541), Expect = 1.920e-60
Identity = 123/269 (45.72%), Postives = 160/269 (59.48%), Query Frame = 3
Query:   51 RPTSLFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKWSKPAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPALASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLAGLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAP--REKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLHVAAGCAGFQRGEVIFDDFAMG 851
            R  +L++ HGGGP  L+ +  G  + +++     Q       +  +P AI+ VSAHWEE   V+V  GA   LL+DYYGFP+  Y + Y  PG P LA +I+  L   G+ A+ D +RGFDHGVF+PL LMYPEADVP VQ+SL+ GLD   HL +G AL  L   ED+LI+ SG + HN    +     G G P  R +AF  WL E+ AS  + P ER  RL  WE   PH+R  HPREEHLLPLHV AG AG +R   ++    +G
Sbjct:    5 RARALYIPHGGGPLPLLGD-PGHAELVEALSGLGQ-------ELGRPDAILVVSAHWEEP-EVRVIAGASPGLLYDYYGFPEEAYRIRYPAPGAPDLADQILAALGRAGIPARLDGERGFDHGVFVPLALMYPEADVPCVQISLIRGLDPRAHLELGRALSALE-GEDLLILGSGFSFHNVREFFAG---GAGGPDSRNEAFQAWLAESCASPAIEPPERLGRLEGWER-VPHARYCHPREEHLLPLHVCAGFAGGRRASRVWSWSVLG 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig188.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRX5_ECTSI7.280e-13874.72LigB domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CEX8_9STRA7.920e-7248.03Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A496XGL0_9GAMM7.650e-6245.52Dioxygenase n=1 Tax=Gammaproteobacteria bacterium ... [more]
A0A2T6NDR8_9GAMM4.470e-6148.61Dioxygenase n=1 Tax=gamma proteobacterium symbiont... [more]
A0A3B9P8V8_9CHLR8.990e-6146.21Dioxygenase n=1 Tax=Anaerolineaceae bacterium TaxI... [more]
A0A1J4QGR4_9GAMM1.050e-6047.20Dioxygenase n=1 Tax=Oceanisphaera psychrotolerans ... [more]
I7ZAX2_9GAMM1.260e-6045.71Catalytic LigB subunit of aromatic ring-opening di... [more]
A0A845FS38_9GAMM1.260e-6048.21Dioxygenase n=1 Tax=Pseudomaricurvus sp. HS19 TaxI... [more]
A0A0L0DII2_THETB1.650e-6047.39Extradiol ring-cleavage dioxygenase n=1 Tax=Thecam... [more]
A0A7X8D0G4_9SPIR1.920e-6045.72Dioxygenase n=1 Tax=Treponema sp. TaxID=166 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig188contigP-littoralis_Contig188:317980..323832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRX5
PFAMsLigB
Model size2011
Max annot lvl2759|Eukaryota
KEGG rclassRC00387
KEGG koko:K15777
KEGG ReactionR08836
KEGG Pathwayko00965,map00965
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.11e-144
EggNOG OGsCOG3384@1|root,2QS66@2759|Eukaryota
Ec32 ortholog descriptionExtradiol ring-cleavage dioxygenase, class III enzyme, subunit B
Ec32 orthologEc-08_002800.1
Descriptionferrous iron binding
Cds size894
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig188.62.1prot_P-littoralis_Contig188.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig188 319059..323794 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789899.4409432-UTR-P-littoralis_Contig188:317979..3190581680789899.4409432-UTR-P-littoralis_Contig188:317979..319058Pylaiella littoralis U1_48UTRP-littoralis_Contig188 317980..319058 -
1680789899.5318737-UTR-P-littoralis_Contig188:323794..3238321680789899.5318737-UTR-P-littoralis_Contig188:323794..323832Pylaiella littoralis U1_48UTRP-littoralis_Contig188 323795..323832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789899.4666204-CDS-P-littoralis_Contig188:319058..3194121680789899.4666204-CDS-P-littoralis_Contig188:319058..319412Pylaiella littoralis U1_48CDSP-littoralis_Contig188 319059..319412 -
1680789899.4840982-CDS-P-littoralis_Contig188:319997..3201021680789899.4840982-CDS-P-littoralis_Contig188:319997..320102Pylaiella littoralis U1_48CDSP-littoralis_Contig188 319998..320102 -
1680789899.4946623-CDS-P-littoralis_Contig188:320875..3210351680789899.4946623-CDS-P-littoralis_Contig188:320875..321035Pylaiella littoralis U1_48CDSP-littoralis_Contig188 320876..321035 -
1680789899.5102606-CDS-P-littoralis_Contig188:321514..3217431680789899.5102606-CDS-P-littoralis_Contig188:321514..321743Pylaiella littoralis U1_48CDSP-littoralis_Contig188 321515..321743 -
1680789899.5209937-CDS-P-littoralis_Contig188:323748..3237941680789899.5209937-CDS-P-littoralis_Contig188:323748..323794Pylaiella littoralis U1_48CDSP-littoralis_Contig188 323749..323794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig188.62.1

>prot_P-littoralis_Contig188.62.1 ID=prot_P-littoralis_Contig188.62.1|Name=mRNA_P-littoralis_Contig188.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=298bp
MEHPRPTSLFLSHGGGPGFLMKEGSGMMKQIDSTCAAAQWYRTFTKKWSK
PAAIIAVSAHWEERGAVKVTTGAKHPLLFDYYGFPDYTYDLEYAPPGEPA
LASRIIDVLRAGGLKAKGDNDRGFDHGVFIPLKLMYPEADVPVVQVSLLA
GLDSEVHLRIGAALGTLALEEDVLIVCSGQATHNSHSSYPSYPPGKGAPR
EKAFVDWLKETAASSTVTPDERRRRLREWETDAPHSRNAHPREEHLLPLH
VAAGCAGFQRGEVIFDDFAMGGMSLACVGFWSSGSSSSISSGGGDVW*
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mRNA from alignment at P-littoralis_Contig188:317980..323832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig188.62.1 ID=mRNA_P-littoralis_Contig188.62.1|Name=mRNA_P-littoralis_Contig188.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5853bp|location=Sequence derived from alignment at P-littoralis_Contig188:317980..323832- (Pylaiella littoralis U1_48)
AGAATCACGCAACACGACCCCCCGGCAAGAGCTCGACGATGGAGCATCCG AGGCCGACATCGCTGTTTCTGTCTCACGGGGGAGGTCAGATAAGCCATTT ATTTTGTGGATCGGTTTTTCAATTCGCAGCAGAAGCAGTGGGTCTTTGAT GTCTGAGTGTGGCTCAAGCAAGTGCGTCTTTTGTGAGAGAGGCGATGCAT ATCCCGATCGAGAATCTCTACTCGTACGTATGATATATACGTACGTATTC CTTAAAGACAGCTGTTCGTGTGCAGGCAGCACCAGGTGGTGTCAAGGTTC TTGTAAATACGTAAACAAGGTTCTTGTAAATACGTAAACAAGGTTCTTGT AAATACGTAAACACGTAAACACATGAAAACCTTCAATTTTTATTTTCTGC CCTGCCTTTGTTTAGGGCACCAGGTGATGCAAAGGGGCGGGTTTGGGGGA TGCTGCTGAAGGCACATAATTTTGCCTGCCCACTTGTTTGTGTGTACAGG TTGCATGTGCTTCGAAGTGACTGTGTGCTTATTGTGTACGTCCTATTGAT TCCGGGCACAAGTCTACACCTTTCGGTATGAAGTGGGTGCACCAGCCGGG GTCGAAGTACGAAATATAAGTACTGTACTTACGATGTTGTCCTTCGAAGT ACGACACAGATGAAAAATTGCAGAGAATCGCTTGTCGAACAGGCACCTGG CGTTGAGGTAAATGTCAACAACAGAGTCACCTGTCTTCGGGTCCATCCGT GAGTAAGGCGATACAGCTATGTGTGTGCGTGTGTGTGTGCTGTCATCATC CCATAACATCTGGACGCCAGCCTACACCCCTGTACAGAGGACGGTGCTTG GAGGAAAAATGAAGAAGGAAAAATAATGAAAGGAAACATGGCTTCATATA ATGTTATTTACACAAAAAAATAAATAAAACACATTGATGTCTTTGTAAGA AAAACAATGAAAAAAAAAAAGAAGGCAAGACACCGCCCAACCGAGGGATA TCTATCCTCGGTCGTGTCACCAAAATACAAGAAATACCGAAGTACAGACG CGAAAAATTGAAAATTAAATCACCAAAAATTAAAAAAACAGGGCCCAAAA AGGAGGGGTGACAGCGCAGTCCGAGAGAAAGACAAGACGAAAAATGAGAT ACTGCTTCAGCGATAAATAAAAAAAAGCGGACGGCGGAAAAGTAGCAGAG AGACAGAAAAATATAGGCGATGGAGGAAGGGTAATAAATAGATGCTGTGG GTTTTTACAAGCAATCAATCGCAAACATCTGGTCTCGTAACAAAGGGTCT GCCTGCTCATCCTTGCTTTCCTCCCACGCACTCATGCCCCCAGTCACTCG TATACACCACCACACGCTGTTTCTTGTGCCCGAATACATGCATGCCAAGC AGCAACACAACACCACCTCACTCCTCGATTTCTGCGCAACAGCTTTTTCA ACCCCATCGCACCCCGCAGCTTGGGTTGCTTCGTCTGCCCCCCCGCTACG GCACTGCATGCAGTGTTTGCAGCCAACACCACTCGGTACCTTCCGCCCTG CAGCCTTTTTCCAGCCCCACAATGCCGCGCTGCTTTTTCGGGGGGCTTAT TCTCCCCTTCCCCTGGGTCCTATCATAGCGCATCATGTGGAAATGAAAAA ACATGGTGCTGGCCTGTCCAAGACAGGGCCGACTGGTGGGCCCCGGTCGC CACCTTCCAAATAACGTTTTTACATGCAAGAAGGTCGTCGTTTGTAACTC ACCATGCCATCAATCACACACTGGGAGACACACGTTTTTTTTGTCATCTT TTAACGTCGTTACTCATGGGAGACGTGGGTACATGCTAGGTTTCGCGATG CGTATATATGTCATACTTGCGTGACGGGCGGTCTGATCTTTTTTCTTTTG ATGTGTTGATCATGTTGCTTCAGGACTCCTGTCATGGGCGCGGGGTATGA TGCAGTATTATTGTGATGTATTTTGTCGTAGAATCAAACGTCAATTTCAT CACCACCTCATTTTCATGCCCCCCCTTCACTCATCCCTCCCCCTCCCCCC CCCTCCCTGCCTATACCCACGCACACACAAACAAAAAAGGCCCCGGGTTC CTCATGAAAGAGGGGTCGGGGATGATGAAACAAATCGATTCCACGTGCGC CGCGGCGCAGTGGTACCGAACGTTCACAAAGAAGTGGTCAAAGCCCGCGG CTATAATCGCTGTGTCTGCGCACTGGGAGGAGCGGGGCGCCGTGAAAGTC ACCACCGGCGCCAAACACCCCCTGTTGTTCGACTACTACGGGTTCCCGGA CTACACCTACGACCTCGAGTGAGTGTGTGTGGGGGGGTGTAAGTACTGTA GTTTGTTCGCCTCTTGTTTTGTTGTCATTGTTGTTGTTGTGCTTTAGTTT GAAGCATGTGTAGGTTATATAACTATGGCACATTTTCGTGTGTCTGTCTT GTCTTCTTTTTTTGTGCTGCTGAAGAGACGAGGCCGGAGCTGACCAGGAA CATTGTGCAACACAATCCTAAAACCCGTTGTGTGAAAAAAAAAAACTTCC CTCATGAAAACCGTGTGCCATATACCGTATCACCACCCTGAGGCACCCCC TGTGACATCGTGCGAGTATTTATACGTGGGTAAATGGATCCGTTTTGTAA CGACGAACACGGGCACACGCTGCTGTGTACCTTAATGATAACCCATACAA GTCAAGAATTATTATTTGTTGTTTCTTTTTTTTTTATCCTTCAGACAACC CACCTCTTCATGTTACGTATGGGACAACGTCGGTTTGTTTTTCCAAGGTA CGCGCCCCCCGGGGAACCGGCGTTGGCGAGCCGCATCATCGACGTGCTTC GAGCGGGCGGGTTGAAGGCCAAGGGCGACAACGATCGGGGTTTCGACCAC GGCGTTTTCATCCCGCTCAAGCTCATGTATCCCGAGGCCGACGTTCCCGT CGTGCAGGTACAGCTAACACTCGGAAGCACCGAGCATTTGTTTGCACTTT ATTTTTTCATGTGCAAGGCGCTGTGGTCATCTATTGCCCTTTGATCCAGG TTTTGATGAAGTCCACCATACGTTTTCACGACGCATATTGGAATGGATGG ACCATATGGTTGGTACATTACGAGTGTGGGACATACTTTCCAAGGATGAT GATAGCGGGGGGTAAATATGTAAATATCATATATACCTGATTCAGTTATC AGTCGGTAGCTTTTATTTGTGTGCACCTGTCATACTAGCGATCTAAAACG CGACTGCTTGTGGTCGGATGTCGGGCATTTTTTTTTGTCTGTGTGCAGTA TAGCACTCCGGGTGTTCCTCTGGGTATTACAGCACTGCGGGTGTTTAAAT AATTTGCTCGATTCGTGTGTTCCGATTTTCGGGGTATCGTACATGGGCAT CGTTGACTTTTTTTAGGGAGGGACTCTCTTAAAGCAGAGATGAAGTGCTG CTGTTATAAGAAGGCGTGCGGAACGAGGCGCGCTCGCTATATTACACGAA GAATCGTTGAAAGTCTCAAAAATTACTCCCGTCGCACGCATTGCCAAACA ACTCAACTCAAGAATGAAAGGGCATAAAGAAAAATAGAACCCCCCCTGTC CCTGTCCCTCGTCTGCAGTGACGTAACCCCTCCCACCCCTCCCACCCCGG CCGCCCCCCCCCCCCCGCCCCCCCCCCCTCTTCGTTTCCCCTTGTCTGCC GCGATACGACACCAAAACATCCTGAACAAGGTTTCCCTCCTGGCAGGTCT TGACTCCGAAGTGCACCTGAGGATCGGCGCGGCTCTCGGGACGCTAGCCC TGGAAGAGGACGTGTTGATCGTCTGCAGCGGTCAGGTGGGTACACATATC ATACGATGATATCATATGTTGTAGGGGGTCGGTTGCAGGTGTGTCGACTA AATAATCTGCAGCGACTCGGTCGTGTCCTTTGGGCTTTGTTGACGAGCCG GCCGTGAGCGCGCGGAGGTCACTCAGCAGAGTGCACCCTGGTGGTCCTGA GCAGCAGCAGTAAGTGGATGAAAATACGTAAAAAGGTAGAGATTGTCTCT GTACACATTGCTACTCGCTATGTTGTTATGTATGGGAGCGGTTTAAAAAA TTGCAATAAATTGTACGAAGTACAGTATTGATCACGGGTGTCCATTACCA TCAGAAGAAGGCGGGCCTCGTTCTCCTCGTCCCAGGCACAACATGTAAGT GTGTATCCGCCACACAACGTGCCCACCCTCAACCTACAGCAGTTGCCCAA GAAAAAAACCCGACGGTTTAACTACCTAATTCGAATTATAATGATACCCA ACTCCCCCCCGCCGCGCTCTTCATGCCTTACACTCCCCTCCCCGGTGCGT GCTTCCCCCCCCCTTCCCCCCCTCTTCCGAAAACACAAAAAATAAACACT GTCACCCCGTGCTATGACAGGCGACCCACAACAGCCACAGCTCCTACCCG TCGTACCCCCCGGGAAAGGGAGCTCCCAGGGAAAAGGCGTTCGTCGACTG GCTCAAGGAAACTGCCGCCTCCTCGACAGTGACTCCCGACGAGCGACGCC GACGACTGAGGGAGTGGGAGACAGACGCCCCCCACTCGCGAAACGCCCAC CCACGGGAGGAACACCTGTTGCCGTTGCACGTGGCGGCCGGGTGCGCCGG GTTCCAGCGCGGGGAGGTCATCTTCGACGACTTCGCCATGGGAGGCATGT CTCTGGCATGCGTGGGGTTTTGGTCGTCTGGTAGCAGCAGTAGTATAAGC TCTGGAGGCGGTGACGTTTGGTGAGCGGAAGGGGGAAGGGGGCGGGGATT ATGTTGGTGATGATGTGGTGGTGGGTGTGGTAGCGGTGGTGGAGGTGAAA ATGGTGCCGGCATTGGCTCCGCCTGAATTTATTGATTTGGTGGTTTTTTC TTTCCTCGCTTCCCCAGAAGCAGCGCGCATGGTGTTTCGTTTCTGGTGGT GAAGCGGTTGATGCTGTTTCGCCAGTCAAGCCTCGTGAATTTACTACTGC TGTGTTGCTGCTTTGTGTGCGGTGCGCCCTCCACGCCTTCGCATGCCTTG TTGAGGAGAGGACGAGGAAAGCCAAACGGATGGGGAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGATACGAGGAGACAGTCGCTGTTGTCTTACAGA AATGTGCCGGGAAGGGCTGTCTTGTTTGATGAGCCAACATGCCGATTTTA GTCTCTCTCCTGCTGGGTGTATACCTTTCGCTCCCGTTCTTATCCCTCCC TGCATGTGCAGGCGAAGAGGCGGGGAAGGAGGGTGGGTGGGGACTACCGT AGATGCACAGGCCGCCCTCCACCGAATCGGTGAGGATGGTGCGCACGTGG ATGGTATCGCCCCCGCCGCTGCTACCGTTCCCGTCGCGGTCGTTGTTTGC TTTTGTTTGGGTTCGACTTGGTGGGTGTTCGGTGGGTCTGGGCTCTCAAC TCCACCGACCCCGTGTATTACATCCAAGGGCGCTGACTGCTGACTGCGGA TCGCTGACTGCTACTGGAGTATCTCGTGCTGGCACTCGCCACTAAGCCGG GCTTGCGTTGATTGTGGTGCCGCCGCCACCGCTGACAGCTTCGATTTTCA CTACCACGATCACAAACATCAGTATCATACAGCATATAGCATGATTGGTT TTCTCTTCCTGTAGGGCGGTTGGTCGTGGCTTTGGGGCCCAGGAAGGAGA GTTTGTGATATAATCTACAACAACACCGCTAAAATCCCACCCTGCTGGCC GATGCAAACAAAACACACCCTGCTGCGGGGGGACACCATACTGCCACTCC AGGGTTATTTGTGCCTTGAATATCTTAAAGAGATGTGGTGCCGTGCAATT CCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig188:317980..323832-

>mRNA_P-littoralis_Contig188.62.1 ID=mRNA_P-littoralis_Contig188.62.1|Name=mRNA_P-littoralis_Contig188.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=894bp|location=Sequence derived from alignment at P-littoralis_Contig188:317980..323832- (Pylaiella littoralis U1_48)
ATGGAGCATCCGAGGCCGACATCGCTGTTTCTGTCTCACGGGGGAGGCCC
CGGGTTCCTCATGAAAGAGGGGTCGGGGATGATGAAACAAATCGATTCCA
CGTGCGCCGCGGCGCAGTGGTACCGAACGTTCACAAAGAAGTGGTCAAAG
CCCGCGGCTATAATCGCTGTGTCTGCGCACTGGGAGGAGCGGGGCGCCGT
GAAAGTCACCACCGGCGCCAAACACCCCCTGTTGTTCGACTACTACGGGT
TCCCGGACTACACCTACGACCTCGAGTACGCGCCCCCCGGGGAACCGGCG
TTGGCGAGCCGCATCATCGACGTGCTTCGAGCGGGCGGGTTGAAGGCCAA
GGGCGACAACGATCGGGGTTTCGACCACGGCGTTTTCATCCCGCTCAAGC
TCATGTATCCCGAGGCCGACGTTCCCGTCGTGCAGGTTTCCCTCCTGGCA
GGTCTTGACTCCGAAGTGCACCTGAGGATCGGCGCGGCTCTCGGGACGCT
AGCCCTGGAAGAGGACGTGTTGATCGTCTGCAGCGGTCAGGCGACCCACA
ACAGCCACAGCTCCTACCCGTCGTACCCCCCGGGAAAGGGAGCTCCCAGG
GAAAAGGCGTTCGTCGACTGGCTCAAGGAAACTGCCGCCTCCTCGACAGT
GACTCCCGACGAGCGACGCCGACGACTGAGGGAGTGGGAGACAGACGCCC
CCCACTCGCGAAACGCCCACCCACGGGAGGAACACCTGTTGCCGTTGCAC
GTGGCGGCCGGGTGCGCCGGGTTCCAGCGCGGGGAGGTCATCTTCGACGA
CTTCGCCATGGGAGGCATGTCTCTGGCATGCGTGGGGTTTTGGTCGTCTG
GTAGCAGCAGTAGTATAAGCTCTGGAGGCGGTGACGTTTGGTGA
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