mRNA_P-littoralis_Contig187.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig187.15.1
Unique NamemRNA_P-littoralis_Contig187.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 9.360e-57
Identity = 102/181 (56.35%), Postives = 117/181 (64.64%), Query Frame = 1
Query:    1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRNSFP------------REYLEKAG---QPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAH-VIVGESWGVWYKETDGS------GTRMAFCP 477
            RR  DRYCT P AV+ L   V+I G VLDMCGG  DAVA     +C V+TNDV +               R+   KA    QPDWVVTSPPY+GA+ FVK+AL VA  GVALKLPLSFLEPCADRG WL +NPP+VC+ LRR  +T AH V VGE WGVWY  TDG       G+R+ FCP
Sbjct:  123 RRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGGPEDAVAQGFRSTCEVLTNDVSSRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATKGVALKLPLSFLEPCADRGGWLVDNPPAVCIFLRRAKYTHAHHVKVGEFWGVWY--TDGGCCGKSGGSRLVFCP 301          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.460e-56
Identity = 92/160 (57.50%), Postives = 113/160 (70.62%), Query Frame = 1
Query:    1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDV-------------RNSFPREYL--EKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAHVIVGESWGVWY 435
            RR  DRYCTSP+ ++AL+  VSI G VLDMCGG  DAVA+RL  +C V+TNDV               SF  ++L      QPDW+VTSPPY+GA+ FVK+AL VA+ GVALKLPLSFLEPCADR  WL+ NPP++C+++ R  + PAHV VGE WGVWY
Sbjct:   65 RRCVDRYCTSPATLEALLGVVSISGCVLDMCGGTDDAVAIRLRDTCQVLTNDVGPRLSPATNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWY 224          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.480e-51
Identity = 93/182 (51.10%), Postives = 117/182 (64.29%), Query Frame = 1
Query:    1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDV-------------------RNSFPREYLEKA--GQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAHVIVGESWGVWY----KETDGSGTRMAF 471
            RR  DRYCTS  AV+AL+  V++ G VLDMCGG  DAVA +L  +C VVTNDV                   +++F  E+L      QP+ VV SPPY+GA+ FVK+AL VA++GVALK  LSFLEPC DR  WL+ NPP+VCV LRR ++TP HV++GE WGVWY      T   GT++ F
Sbjct:  113 RRHLDRYCTSIVAVEALLDAVNVSGRVLDMCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALKRSLSFLEPCVDRADWLEANPPTVCVFLRRASYTPEHVMMGEFWGVWYCTGGDRTAVGGTKLVF 294          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.380e-47
Identity = 84/143 (58.74%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    1 RRPFDRYCTSPSAVDALVAEVSIEGVVLDMCGGRMDAVALRLGLSCTVVTNDVRN------------------SFPREYL-EKAGQ-PDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCV 369
            RR  DRYCTSP AV+AL+  V +EG VLDMCGG  DA+A RLG +C VVTND+                    SF  ++L  K GQ PDWV+TSPPY+GA+ +VKSAL +A  GVALKLPLSFLEPCADRG WL+ NPP+VCV
Sbjct:   77 RRCLDRYCTSPEAVEALLGAVELEGCVLDMCGGPGDAIATRLGATCKVVTNDISTRLSPGGLPPDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALKLPLSFLEPCADRGGWLQANPPAVCV 219          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5K929_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K929_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.240e-45
Identity = 80/136 (58.82%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   88 MCGGRMDAVALRLGLSCTVVTNDVRNSFPREYLEKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAH-VIVGESWGVWYKETDGS-----GTRMAFCP 477
            MCGG  DAVAL  G +C V+TNDV +     +  K  QPDWVVTSPPY+GA+ FVK+ L VA  GVAL+LPLSF +PCADRG WL +NPP +C  LRR  +T AH V VGE WGVWY  TDG      G+R+ FCP
Sbjct:    1 MCGGPEDAVALGFGGTCEVLTNDVSSRLSPAHPGK--QPDWVVTSPPYKGAVGFVKAVLAVAAKGVALRLPLSFRKPCADRGSWLVDNPPVMCGFLRRAKYTHAHHVKVGEFWGVWY--TDGGCGKSGGSRLVFCP 132          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: D8LSI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI1_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.440e-40
Identity = 73/148 (49.32%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   88 MCGGRMDAVALRLGLSCTVVTNDVRNS-------------FPREYLE--KAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAH-VIVGESWGVWYKETDG--SGTRMAFCP 477
            MCGG  DAVA RL  +C ++TNDV +              FP ++L      +P+WVVTSPPY  A+ FVK+A+ +A  GVA K+P+ FLEPCADRG WL+ NPPSVCV LRR  +T A+    GE WGVWY +     + TR+ FCP
Sbjct:    1 MCGGPTDAVATRLRSTCEILTNDVSSGRPADTNLNASLELFPEDFLAAYSGKRPEWVVTSPPYSRALTFVKAAMSLATKGVAFKMPIFFLEPCADRGGWLQTNPPSVCVFLRRAKYTRANNAKTGEFWGVWYPQEMSCRNRTRLVFCP 148          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.000e-39
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 1
Query:  166 SFPREYL--EKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAHVIVGESWGVWYKETDGSG----TRMAFCP 477
            S+  +YL      QPDWVV SPPY+GA++FVK+AL VA+ GVALKLPLSFLEPCADR  WL+ENPPS+C+++ R  + PAHV VGE WGVWY    GS     T+++F P
Sbjct:   22 SYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKEGVALKLPLSFLEPCADRAGWLQENPPSLCMMMSRARYQPAHVRVGEFWGVWYPPGGGSSIGDSTKLSFLP 131          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.040e-35
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  199 QPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAHVIVGESWGVWYKETDG----SGTRMAFCP 477
            QPDWVVT PPY GA+ FVK+AL VA+ GVALKLPLSFLEPCADR  WL+ NPP++C+++ R  + PAHV VGE WGVWY    G      T++ F P
Sbjct:   76 QPDWVVTRPPYNGALAFVKAALPVAKKGVALKLPLSFLEPCADRAGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGYSSSDSTKLLFVP 172          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5JT40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT40_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.020e-34
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  166 SFPREYL--EKAGQPDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAHVIVGESWGVWYKETDGSG----TRMAFCP 477
            SF  +YL      QPDWVV+SPPY GA+ FVK+AL VA+ GVALKLPLSFLEPCADR +WL+ NPP++C+++ R  + PA V VGE  GVWY    GS     T++ F P
Sbjct:   23 SFADDYLAAHNGQQPDWVVSSPPYEGALAFVKAALTVAKEGVALKLPLSFLEPCADRAVWLQANPPALCMMMSRARYQPALVRVGEFRGVWYPPGSGSSSSDSTKLLFLP 132          
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Match: A0A6H5K9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.460e-34
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 1
Query:  202 PDWVVTSPPYRGAINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVTHTPAHVIVGESWGVWYKETDGS 453
            PDWVVTSPPY+GA+ FVK+AL VA+  VALKLPLSFLEPCADR  WL+ NPP++C+++ R  + PAHV VGE WGVWY    GS
Sbjct:   57 PDWVVTSPPYKGALGFVKAALTVAKESVALKLPLSFLEPCADREGWLQANPPALCMMMSRARYQPAHVRVGEFWGVWYPPGSGS 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig187.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JUK3_9PHAE9.360e-5756.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE3.460e-5657.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE1.480e-5151.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI2.380e-4758.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K929_9PHAE1.240e-4558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSI1_ECTSI1.440e-4049.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAM1_9PHAE4.000e-3959.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV3_9PHAE2.040e-3560.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT40_9PHAE1.020e-3456.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B9_9PHAE1.460e-3466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig187contigP-littoralis_Contig187:150863..151655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog443598.AUFA01000017_gene7339
Model size503
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.54e-09
EggNOG OGsCOG2813@1|root,COG2813@2|Bacteria,1QYWA@1224|Proteobacteria,2TY0H@28211|Alphaproteobacteria,3K6VG@41294|Bradyrhizobiaceae
DescriptionSpecifically methylates the guanine in position
Cds size393
COG categoryJ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789894.1682196-UTR-P-littoralis_Contig187:150862..1508851680789894.1682196-UTR-P-littoralis_Contig187:150862..150885Pylaiella littoralis U1_48UTRP-littoralis_Contig187 150863..150885 -
1680789894.209406-UTR-P-littoralis_Contig187:151568..1516551680789894.209406-UTR-P-littoralis_Contig187:151568..151655Pylaiella littoralis U1_48UTRP-littoralis_Contig187 151569..151655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789894.1808145-CDS-P-littoralis_Contig187:150885..1511981680789894.1808145-CDS-P-littoralis_Contig187:150885..151198Pylaiella littoralis U1_48CDSP-littoralis_Contig187 150886..151198 -
1680789894.1946652-CDS-P-littoralis_Contig187:151488..1515681680789894.1946652-CDS-P-littoralis_Contig187:151488..151568Pylaiella littoralis U1_48CDSP-littoralis_Contig187 151489..151568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig187.15.1prot_P-littoralis_Contig187.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig187 150886..151568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig187.15.1

>prot_P-littoralis_Contig187.15.1 ID=prot_P-littoralis_Contig187.15.1|Name=mRNA_P-littoralis_Contig187.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
MCGGRMDAVALRLGLSCTVVTNDVRNSFPREYLEKAGQPDWVVTSPPYRG
AINFVKSALGVARYGVALKLPLSFLEPCADRGIWLKENPPSVCVVLRRVT
HTPAHVIVGESWGVWYKETDGSGTRMAFCP*
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mRNA from alignment at P-littoralis_Contig187:150863..151655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig187.15.1 ID=mRNA_P-littoralis_Contig187.15.1|Name=mRNA_P-littoralis_Contig187.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=793bp|location=Sequence derived from alignment at P-littoralis_Contig187:150863..151655- (Pylaiella littoralis U1_48)
CGCAGACCTTTTGATCGGTACTGCACGTCGCCCTCGGCGGTCGACGCTTT GGTTGCCGAGGTTAGCATTGAAGGTGTGGTGCTGGATATGTGCGGAGGAA GGATGGACGCCGTGGCGCTTCGCCTTGGCCTGAGCTGTACTGTCGTCACG AACGACGTGAGGAACAGGTGAGATTCCCCAAAATTATTTTAAGGCGGACG GACGACATTCGCCTCAAACCCACGCCCACGTCCATCGACCTTCCGTCCAT CCATAACTCATGCACTTTTGTACAGCAGTTTTTTTTTTGTACAGCAGTGT CCGACGCATTTTTGTAAAATAGACAACATTTTTATCGCTGCGGGCAATAG GGTGTGTAAGGCTCGCGAAAGCTCCCAAAGAAATATAGTCTATAGCTCAA ACACTTCACAATGTATGCCAGGTGTGCGGACACCAACCTGGATGCGGGCA GCCGCAGCTTTCCCCGGGAGTACCTTGAGAAGGCCGGACAACCGGATTGG GTCGTTACAAGCCCCCCCTACAGGGGCGCTATAAATTTCGTGAAGTCAGC TTTGGGAGTGGCTAGATACGGTGTTGCGCTGAAGCTGCCGCTTTCGTTCC TGGAACCGTGTGCGGACCGGGGCATATGGCTGAAAGAAAACCCTCCATCG GTCTGTGTAGTCTTGAGGAGGGTCACGCACACCCCCGCGCATGTGATAGT GGGGGAGTCTTGGGGCGTGTGGTACAAGGAGACAGACGGAAGTGGCACGA GGATGGCGTTTTGCCCCTGAACCCCCGAGTGTTGACGGGGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig187:150863..151655-

>mRNA_P-littoralis_Contig187.15.1 ID=mRNA_P-littoralis_Contig187.15.1|Name=mRNA_P-littoralis_Contig187.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig187:150863..151655- (Pylaiella littoralis U1_48)
ATGTGCGGAGGAAGGATGGACGCCGTGGCGCTTCGCCTTGGCCTGAGCTG
TACTGTCGTCACGAACGACGTGAGGAACAGCTTTCCCCGGGAGTACCTTG
AGAAGGCCGGACAACCGGATTGGGTCGTTACAAGCCCCCCCTACAGGGGC
GCTATAAATTTCGTGAAGTCAGCTTTGGGAGTGGCTAGATACGGTGTTGC
GCTGAAGCTGCCGCTTTCGTTCCTGGAACCGTGTGCGGACCGGGGCATAT
GGCTGAAAGAAAACCCTCCATCGGTCTGTGTAGTCTTGAGGAGGGTCACG
CACACCCCCGCGCATGTGATAGTGGGGGAGTCTTGGGGCGTGTGGTACAA
GGAGACAGACGGAAGTGGCACGAGGATGGCGTTTTGCCCCTGA
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