mRNA_P-littoralis_Contig186.144.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig186.144.1
Unique NamemRNA_P-littoralis_Contig186.144.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 7.650e-64
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 1
Query:   76 NFCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPDAEDREWASTE 531
            +FC+DGNFVV  R Y KRQPF +I+DEDI E+CREY+D+R+Y RKKG+ RFR+ADFQRWVNTVCL++E AGG GI RSTA  WI  LGFRW RH K VY DGHNRPDV++AR+ +T +MF++RR M IP +VET VMVK  DA DRE  ST+
Sbjct:   46 DFCKDGNFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCLKEEFAGGGGICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVVQARRLYTEKMFVMRRLMSIPEKVETVVMVKVRDARDREKTSTD 197          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 8.880e-63
Identity = 100/152 (65.79%), Postives = 121/152 (79.61%), Query Frame = 1
Query:   76 NFCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPDAEDREWASTE 531
            +FC+DG FVV  R Y KRQPF +I+DEDI E+CREY+D+R+Y RKKG+ RFR+ADFQRWVNTVCL++E AGG GI RSTA  WI  LGFRW RH K VY DGHNRPDV++AR+ +T +MF++RR M IP +VET VMVK  DA DRE  ST+
Sbjct:  500 DFCKDGKFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCLKEEFAGGGGICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVVQARRLYTEKMFVMRRLMSIPEKVETVVMVKVRDARDREKTSTD 651          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.790e-56
Identity = 95/146 (65.07%), Postives = 114/146 (78.08%), Query Frame = 1
Query:   79 FCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPDAEDRE 516
            FC+DG FVV DR Y KRQPFT+I+DEDI ++CREYID+R+Y R+KG R FR+ADF RWVN VCL +E   G GISRSTA  WI  LGFRW RH K VY DGHNRPDV+EAR+ +T +MF++RR + IP +VET VMVK  DAE+ E
Sbjct:  463 FCKDGKFVVPDRAYVKRQPFTYIDDEDIRDQCREYIDERIY-RRKGTR-FRVADFHRWVNEVCLEEEFKDGGGISRSTAHHWISQLGFRWRRHGKCVYVDGHNRPDVVEARRLYTEKMFVMRRIISIPEKVETVVMVKVRDAEEGE 606          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5KDG4_9PHAE (Uncharacterized protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG4_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.790e-55
Identity = 99/190 (52.11%), Postives = 120/190 (63.16%), Query Frame = 1
Query:   76 NFCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKR--------------------------------------VYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPDAEDREWASTE 531
            +FC+DG FVV  R Y KRQPF +I+DEDI E+CREY+D+R+Y RKKG+ RFR+ADFQRWVNTVCL++E AGG GI RSTA  WI  LGFRW RH                                         VY DGHNRPDV++AR+ +T +MF++RR M IP +VET VMVK  DA DRE  ST+
Sbjct:  495 DFCKDGKFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCLKEEFAGGGGICRSTAHVWIAQLGFRWRRHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVYVDGHNRPDVVQARRLYTEKMFVMRRLMSIPEKVETVVMVKVRDARDREKTSTD 684          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5L796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L796_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.650e-49
Identity = 83/141 (58.87%), Postives = 104/141 (73.76%), Query Frame = 1
Query:   79 FCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPD 501
            FC+DG F++R RLY   Q  +FI+ EDIAERCRE ID+RLY RKK + RFR++DFQRWVNTV L++  +GG GISR+TA SWI  LGFRW +  K VY DGHNRPDV+EAR+E+ A+M ILR+ M I   V    +  AP+
Sbjct:   25 FCQDGKFLIRKRLYEISQADSFIDHEDIAERCREEIDRRLYRRKKTDPRFRVSDFQRWVNTVLLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVVEARQEYVAKMLILRKMMSIVLXVTMARVRDAPE 165          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5L7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.470e-47
Identity = 78/125 (62.40%), Postives = 95/125 (76.00%), Query Frame = 1
Query:   79 FCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTM 453
            FC+DG F++  RLY  RQ  +FI+ EDIAERCRE ID+RLY RKK +  FR++DFQRWVNTV L++  +GG GISR+TA SWI  LGFRW +  K VY DGHNRPDV EAR E+ A+M ILR+ M
Sbjct:   56 FCQDGKFLISKRLYEIRQADSFIDPEDIAERCREEIDRRLYRRKKTDPWFRVSDFQRWVNTVLLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDV-EARPEYVAKMLILRKMM 179          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5J7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7G3_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 7.690e-47
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = 1
Query:   79 FCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTM 453
            FC+DG F++R RLY   Q  +FI+ EDIAERCRE ID+RLY RKK + RFR++DFQRWVNTV L++  +GG GISR+TA SWI  LGFRW +  K VY DGHNRPDV+EAR+E+ A+M ILR+ M
Sbjct:  522 FCQDGKFLIRKRLYEISQADSFIDHEDIAERCREEIDRRLYRRKKTDPRFRVSDFQRWVNTVLLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVVEARREYVAKMLILRKMM 646          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 7.710e-44
Identity = 81/151 (53.64%), Postives = 103/151 (68.21%), Query Frame = 1
Query:   79 FCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPDAEDREWASTE 531
            FC+  +FVVR R YNKR+P ++I+DEDI  R REYID+RLY RKK E R RIAD Q+W+N   L++ELAG  GISR T   W+  LGFRW+RH K VY DGHNRPDV+  R+ F   +  L + M IP +VE TVMV     E R+  +++
Sbjct:   25 FCKGDSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSIPVRVEETVMVATSRGEARQEGASD 175          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.260e-43
Identity = 79/151 (52.32%), Postives = 103/151 (68.21%), Query Frame = 1
Query:   79 FCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPDAEDREWASTE 531
            FC  G+FVVR R YNKR+  ++I+DED+  R REYID+RLY RKK E R RIAD Q+W++   L++ELAG  G+SR T   W+  LGFRW+RH K VY DGHNRPDV+  R+ F A +  LR+ M IP +VE TVM      E R+  +++
Sbjct:  386 FCNGGSFVVRKRQYNKREAHSYIDDEDVRYRLREYIDRRLYRRKKDEPRLRIADVQKWIHEDLLKEELAGTRGVSRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVALLKRLRQKMSIPLRVEETVMTATSRGEARQEGASD 536          
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 3.360e-42
Identity = 78/151 (51.66%), Postives = 102/151 (67.55%), Query Frame = 1
Query:   79 FCRDGNFVVRDRLYNKRQPFTFIEDEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGISRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRTMFIPHQVETTVMVKAPDAEDREWASTE 531
            FC  G+FVVR R YNKR+  ++I+DED+  R REYID+RLY RKK E R RIAD Q+W++   L++ELAG  G+S  T   W+  LGFRW+RH K VY DGHNRPDV+  R+ F A +  LR+ M IP +VE TVM      E R+  +++
Sbjct:   69 FCNGGSFVVRKRQYNKREAHSYIDDEDVRYRLREYIDRRLYRRKKNEPRLRIADVQKWIHEDLLKEELAGTRGVSWRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVALLKRLRQKMSIPLRVEETVMTATSRGEARQEGASD 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig186.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K659_9PHAE7.650e-6466.45Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE8.880e-6365.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ42_9PHAE3.790e-5665.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG4_9PHAE1.790e-5552.11Uncharacterized protein n=6 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L796_9PHAE1.650e-4958.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Z5_9PHAE1.470e-4762.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7G3_9PHAE7.690e-4763.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM4_9PHAE7.710e-4453.64Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH07_9PHAE3.260e-4352.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K550_9PHAE3.360e-4251.66Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig186contigP-littoralis_Contig186:413281..414458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZS4
Model size533
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.51e-35
EggNOG OGs2D50F@1|root,2SWWM@2759|Eukaryota
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789892.8599114-CDS-P-littoralis_Contig186:413280..4135281680789892.8599114-CDS-P-littoralis_Contig186:413280..413528Pylaiella littoralis U1_48CDSP-littoralis_Contig186 413281..413528 +
1680789892.8761106-CDS-P-littoralis_Contig186:413708..4139181680789892.8761106-CDS-P-littoralis_Contig186:413708..413918Pylaiella littoralis U1_48CDSP-littoralis_Contig186 413709..413918 +
1680789892.8875859-CDS-P-littoralis_Contig186:414384..4144571680789892.8875859-CDS-P-littoralis_Contig186:414384..414457Pylaiella littoralis U1_48CDSP-littoralis_Contig186 414385..414457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig186.144.1prot_P-littoralis_Contig186.144.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig186 413281..414457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig186.144.1

>prot_P-littoralis_Contig186.144.1 ID=prot_P-littoralis_Contig186.144.1|Name=mRNA_P-littoralis_Contig186.144.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp
SEDGPQPRRRPDGGRYCGDRAGLGGNFCRDGNFVVRDRLYNKRQPFTFIE
DEDIAERCREYIDQRLYCRKKGERRFRIADFQRWVNTVCLRKELAGGAGI
SRSTARSWIVALGFRWARHAKRVYADGHNRPDVLEARKEFTAQMFILRRT
MFIPHQVETTVMVKAPDAEDREWASTE
back to top

mRNA from alignment at P-littoralis_Contig186:413281..414458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig186.144.1 ID=mRNA_P-littoralis_Contig186.144.1|Name=mRNA_P-littoralis_Contig186.144.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1178bp|location=Sequence derived from alignment at P-littoralis_Contig186:413281..414458+ (Pylaiella littoralis U1_48)
TCAGAAGATGGCCCACAGCCGCGCCGTCGGCCAGATGGTGGGCGCTACTG CGGAGACCGTGCGGGGTTGGGTGGAAATTTCTGCAGGGACGGCAACTTCG TCGTGCGCGATCGACTGTACAATAAGCGACAGCCCTTCACGTTCATCGAA GACGAGGACATCGCAGAGCGGTGCCGAGAGTACATCGACCAGCGGCTTTA CTGCCGGAAGAAAGGGGAACGGCGCTTTCGCATCGCAGACTTTCAGAGGT AAGGTTATTCAGGCATGGAAGTAGAGAGGCTCCAGTATGTTACTGGGTCG GTACGAGATGAAGGCGGCCTCGGTGTAATAGAACCTTTGTATGATACAAC CCTAACTACACGCGGAATGTTTTTTTTTTGCTAAGGCCCCTCCTCTGGAT GGTTTCTCGCTCTACTGCTCCGCTACAGGTGGGTGAACACAGTTTGCCTT CGAAAGGAGCTTGCCGGTGGTGCAGGCATTTCGCGCAGCACAGCGCGCAG CTGGATCGTAGCCCTCGGCTTCAGGTGGGCCAGGCACGCAAAACGTGTGT ACGCCGATGGCCACAACCGACCGGACGTCCTCGAGGCCCGGAAGGAGTTC ACGGCACAGATGTTCATCCTGCGACGGACGATGTTTATGTGAGCGTTAGT ATCTGGGCAACAGAAGTCGTCGTGGAAGAGCAGGGAAATAATGCCAGCTT TAGGATGTAGGTATGGGTTTTACACTGCTGCCTATTTTGTATTTCATTGA TCACCAGTAGCGCACTTGCTGCAGTCCAGCACCATATCACCTCAGATTGT GCCAAGTATTCTTTGTTATATATTCCAAACTCTGTTGTTTTACTGCAGTG CTACACTTGCAATCTCTACCGCGCTAGACGATAAAAACGGGTTTCGACAC CGTGCGTGTGAGATTGCTTTTTTTGTGATCGTATGGTGTGTGTTGCTAAC CGTTTGTTGATGCAGGAAGTGCTGGATTTCTATCCCTCGCGATGCTGCAA GTGCGTTTTACTGCTCAAGTAGGAGGGTAGACGTTGCGTACTATCCTGTA CTGATCACACGCTTTCCATGTACGCTCCGCCGCGGTCGCTCCTCTTGTTT ACAGCCCTCACCAGGTAGAAACAACCGTGATGGTGAAAGCCCCGGATGCG GAGGATCGGGAGTGGGCATCCACGGAGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig186:413281..414458+

>mRNA_P-littoralis_Contig186.144.1 ID=mRNA_P-littoralis_Contig186.144.1|Name=mRNA_P-littoralis_Contig186.144.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig186:413281..414458+ (Pylaiella littoralis U1_48)
TCAGAAGATGGCCCACAGCCGCGCCGTCGGCCAGATGGTGGGCGCTACTG
CGGAGACCGTGCGGGGTTGGGTGGAAATTTCTGCAGGGACGGCAACTTCG
TCGTGCGCGATCGACTGTACAATAAGCGACAGCCCTTCACGTTCATCGAA
GACGAGGACATCGCAGAGCGGTGCCGAGAGTACATCGACCAGCGGCTTTA
CTGCCGGAAGAAAGGGGAACGGCGCTTTCGCATCGCAGACTTTCAGAGGT
GGGTGAACACAGTTTGCCTTCGAAAGGAGCTTGCCGGTGGTGCAGGCATT
TCGCGCAGCACAGCGCGCAGCTGGATCGTAGCCCTCGGCTTCAGGTGGGC
CAGGCACGCAAAACGTGTGTACGCCGATGGCCACAACCGACCGGACGTCC
TCGAGGCCCGGAAGGAGTTCACGGCACAGATGTTCATCCTGCGACGGACG
ATGTTTATCCCTCACCAGGTAGAAACAACCGTGATGGTGAAAGCCCCGGA
TGCGGAGGATCGGGAGTGGGCATCCACGGAG
back to top