mRNA_P-littoralis_Contig183.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig183.34.1
Unique NamemRNA_P-littoralis_Contig183.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.680e-48
Identity = 81/106 (76.42%), Postives = 97/106 (91.51%), Query Frame = 3
Query:  336 YSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 653
            +SGNFGRSEYAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N
Sbjct:  548 WSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFIN 653          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 9.520e-46
Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 3
Query:  321 MCMCIYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 653
            +C+ I++GNFGRS+YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N
Sbjct:   30 VCVRIHAGNFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFIN 138          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 9.070e-39
Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  345 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVN 653
            NFGRS+YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+  L D P ++N
Sbjct:  428 NFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFIN 530          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.020e-31
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 3
Query:  342 GNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFV 575
            GNFGRS+YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + TLG   WK +FIT++SWTDIRV ILG V
Sbjct:   24 GNFGRSDYARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 4.280e-29
Identity = 54/82 (65.85%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  396 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTP 641
            GYI S DDSKL+ELMDIL FF++WR +LE + TLGD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S L   P
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKISPLNMFP 84          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.280e-25
Identity = 55/113 (48.67%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  333 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNP 656
            I++GN+GRS+  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++P
Sbjct:   62 IFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSP 174          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.460e-21
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  333 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 605
            I +G +G +E  RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  471 IMNGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.010e-19
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 3
Query:  396 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVS 578
            GYI SAD SKLE LMDILRFF++WR +LE + TLGD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.530e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 3
Query:  393 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYS 539
            AGYI SADDSKLEELMDILRF  +WR +LE ++TLGD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50          
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Match: A0A6H5K071_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K071_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.520e-5
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 3
Query:  348 FGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLE----EKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 605
            + R      K +D +   ITS D   L+ L++IL +F+ W  +L         L D+     F+ + +W D+R++ILGFV+M RY+F DD
Sbjct:  493 YNRDPIDVSKRIDIRKSCITSKDSPLLDRLLEILEWFDTWWQDLNLFGGSDLALDDL-----FLPDQTWDDLRLTILGFVAMTRYVFGDD 577          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig183.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.680e-4876.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE9.520e-4668.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE9.070e-3966.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH17_9PHAE1.020e-3173.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZW9_9PHAE4.280e-2965.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE3.280e-2548.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE7.460e-2150.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNK0_9PHAE2.010e-1968.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K095_9PHAE1.530e-1571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K071_9PHAE1.520e-534.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig183contigP-littoralis_Contig183:192067..192724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size660
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.3670068-CDS-P-littoralis_Contig183:192066..1924951680789881.3670068-CDS-P-littoralis_Contig183:192066..192495Pylaiella littoralis U1_48CDSP-littoralis_Contig183 192067..192495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789881.3806822-UTR-P-littoralis_Contig183:192495..1927241680789881.3806822-UTR-P-littoralis_Contig183:192495..192724Pylaiella littoralis U1_48UTRP-littoralis_Contig183 192496..192724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig183.34.1prot_P-littoralis_Contig183.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig183 192067..192495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig183.34.1

>prot_P-littoralis_Contig183.34.1 ID=prot_P-littoralis_Contig183.34.1|Name=mRNA_P-littoralis_Contig183.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=143bp
WLQRIDFVTYYADAGVRSAGWGLSGEFWGPVERFLQQLMQLAKNINNSAA
MYRHISTRRSLILLFHVPTRLNKKESTDLLVFFIYIFPRAMYTLCARRLS
LPTRPHVCVCVYIQETSAARSTRARKASTRKRATLHRPTTPN*
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mRNA from alignment at P-littoralis_Contig183:192067..192724+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig183.34.1 ID=mRNA_P-littoralis_Contig183.34.1|Name=mRNA_P-littoralis_Contig183.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=658bp|location=Sequence derived from alignment at P-littoralis_Contig183:192067..192724+ (Pylaiella littoralis U1_48)
TGGCTGCAACGGATAGATTTCGTGACATATTATGCGGATGCCGGGGTGCG GAGTGCAGGATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGAT TTTTGCAACAACTGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCT ATGTATCGACATATCTCGACGAGGCGATCACTAATATTGTTGTTTCACGT CCCAACGCGATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTTTTTTA TATATATATTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCT CTTCCCACACGGCCCCATGTATGTGTATGTGTATATATTCAGGAAACTTC GGCCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTA CATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGC GTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGGGC GACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACAT CCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGG ATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTACGTC AACCCGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig183:192067..192724+

>mRNA_P-littoralis_Contig183.34.1 ID=mRNA_P-littoralis_Contig183.34.1|Name=mRNA_P-littoralis_Contig183.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=429bp|location=Sequence derived from alignment at P-littoralis_Contig183:192067..192724+ (Pylaiella littoralis U1_48)
TGGCTGCAACGGATAGATTTCGTGACATATTATGCGGATGCCGGGGTGCG
GAGTGCAGGATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGAT
TTTTGCAACAACTGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCT
ATGTATCGACATATCTCGACGAGGCGATCACTAATATTGTTGTTTCACGT
CCCAACGCGATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTTTTTTA
TATATATATTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCT
CTTCCCACACGGCCCCATGTATGTGTATGTGTATATATTCAGGAAACTTC
GGCCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTA
CATTACATCGGCCGACGACTCCAAACTAG
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