mRNA_P-littoralis_Contig182.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig182.42.1
Unique NamemRNA_P-littoralis_Contig182.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig182.42.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.900e-41
Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    7 KFDGTWMKFVDPSRKTSVVDFDRFALEWNKTVSVMEEEDAATIIPIFRKTAGQLKSYWNEHHESINIRDTMRPIRLQEGPVRNHLRLPDDVGGAATAVAQPWALQPPDGFEFPTQL 354
            KF   W++FVDP+ + +++DFD FALEWNK VS+MEE  +A +IPIFRKTAG LK+YW  HHE +N+RDT+RP R ++ P+R HLR P DVGG A  +AQPW L+ P+GF+ P QL
Sbjct: 1023 KFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSA-VIPIFRKTAGHLKAYWKAHHEQVNMRDTLRPARGRDAPIREHLRAPGDVGGPAGGLAQPWILEAPEGFQMPEQL 1137
[Close]
BLAST of mRNA_P-littoralis_Contig182.42.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.010e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    7 KFDGTWMKFVDPSRKTSVVDFDRFALEWNKTVSVMEEEDAATIIPIFRKTAGQLKSYW 180
            KF   W++FVDP+ + +++DFD FALEWNK VS+MEE  +A +IPIFRKTAG LK+YW
Sbjct:  450 KFGDMWLEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSA-VIPIFRKTAGHLKAYW 506
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig182.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE2.900e-4158.623'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JD89_9PHAE5.010e-1562.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig182contigP-littoralis_Contig182:180887..181443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size379
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.5028627-UTR-P-littoralis_Contig182:180886..1809101680789878.5028627-UTR-P-littoralis_Contig182:180886..180910Pylaiella littoralis U1_48UTRP-littoralis_Contig182 180887..180910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789878.5214136-CDS-P-littoralis_Contig182:180910..1810711680789878.5214136-CDS-P-littoralis_Contig182:180910..181071Pylaiella littoralis U1_48CDSP-littoralis_Contig182 180911..181071 +
1680789878.5336816-CDS-P-littoralis_Contig182:181250..1814431680789878.5336816-CDS-P-littoralis_Contig182:181250..181443Pylaiella littoralis U1_48CDSP-littoralis_Contig182 181251..181443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig182.42.1prot_P-littoralis_Contig182.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig182 180911..181443 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig182.42.1

>prot_P-littoralis_Contig182.42.1 ID=prot_P-littoralis_Contig182.42.1|Name=mRNA_P-littoralis_Contig182.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
MKFVDPSRKTSVVDFDRFALEWNKTVSVMEEEDAATIIPIFRKTAGQLKS
YWNEHHESINIRDTMRPIRLQEGPVRNHLRLPDDVGGAATAVAQPWALQP
PDGFEFPTQLPALPAAGE
back to top

mRNA from alignment at P-littoralis_Contig182:180887..181443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig182.42.1 ID=mRNA_P-littoralis_Contig182.42.1|Name=mRNA_P-littoralis_Contig182.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=557bp|location=Sequence derived from alignment at P-littoralis_Contig182:180887..181443+ (Pylaiella littoralis U1_48)
ATTAAGAAGTTCGATGGTACGTGGATGAAGTTTGTGGACCCGTCGCGGAA
GACGTCGGTGGTAGACTTTGACCGCTTTGCGTTGGAATGGAACAAGACCG
TGTCGGTCATGGAGGAGGAGGACGCCGCCACCATCATCCCTATTTTTAGG
AAGACGGCTGGACAACTAAAGTCATACTGGAATGAGTGAGTATAACATGC
TTCGTTTATTTTTGCATATCATCCAGTTCGGTAGTAGAGTTACAATCAGC
TGTTCGTTAGTTCCTAGCGGACCAGCGTACCAAGCGTGAAGTGAGCCTTG
CTTAATAATTCTCAACTTTGCTGACACGTCCCCTCCATGCCCGTGTATCG
CGTGACGGTTGCAGGCACCACGAAAGCATCAACATAAGGGACACGATGCG
ACCTATCCGCCTACAAGAAGGTCCCGTAAGGAACCACCTCCGACTTCCGG
ACGATGTCGGGGGTGCTGCAACCGCCGTGGCGCAGCCTTGGGCGTTGCAG
CCGCCGGATGGCTTCGAATTCCCCACACAACTGCCGGCCCTCCCGGCGGC
TGGGGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig182:180887..181443+

>mRNA_P-littoralis_Contig182.42.1 ID=mRNA_P-littoralis_Contig182.42.1|Name=mRNA_P-littoralis_Contig182.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig182:180887..181443+ (Pylaiella littoralis U1_48)
ATGAAGTTTGTGGACCCGTCGCGGAAGACGTCGGTGGTAGACTTTGACCG
CTTTGCGTTGGAATGGAACAAGACCGTGTCGGTCATGGAGGAGGAGGACG
CCGCCACCATCATCCCTATTTTTAGGAAGACGGCTGGACAACTAAAGTCA
TACTGGAATGAGCACCACGAAAGCATCAACATAAGGGACACGATGCGACC
TATCCGCCTACAAGAAGGTCCCGTAAGGAACCACCTCCGACTTCCGGACG
ATGTCGGGGGTGCTGCAACCGCCGTGGCGCAGCCTTGGGCGTTGCAGCCG
CCGGATGGCTTCGAATTCCCCACACAACTGCCGGCCCTCCCGGCGGCTGG
GGAG
back to top