prot_P-littoralis_Contig180.100.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig180.100.1
Unique Nameprot_P-littoralis_Contig180.100.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length311
Homology
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: D7G2Q3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q3_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.670e-43
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0
Query:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKR 82
            MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVER EAEQAQLYLDGGQLDGN+IKVAFVLVTKKR
Sbjct:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERAEAEQAQLYLDGGQLDGNRIKVAFVLVTKKR 82          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A7S2XYG7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYG7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.770e-32
Identity = 60/82 (73.17%), Postives = 74/82 (90.24%), Query Frame = 0
Query:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKR 82
            MLHV+NLTRNVK +HL+EIFG+YGKV  V+L VD+RVNLPKGYAFVEF +R +AEQAQLY+DGGQLDGN +KVAF+LV +++
Sbjct:   88 MLHVANLTRNVKREHLEEIFGTYGKVKKVELVVDRRVNLPKGYAFVEFDKRVDAEQAQLYMDGGQLDGNVLKVAFILVKRRK 169          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A835YNB5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB5_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.540e-31
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 0
Query:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAF 75
            +LHVSNLTRNVKA HL+EIFG YG V  V+LA+DK++ LPKGYAFVEF  RT+AEQAQLYLDGGQLDGN +KVAF
Sbjct:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 75          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A7S2SUR0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUR0_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.130e-25
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    2 LHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKR 82
            LHV+NLTRN+K  HL EIFG+YGKV   ++ +D+R NL KG A++EF  R++A+QAQLYLDG Q+DGN+IKVA VLV ++R
Sbjct:   17 LHVANLTRNIKEQHLLEIFGTYGKVNKAEVVLDRRTNLTKGLAYIEFSRRSDADQAQLYLDGAQIDGNRIKVALVLVDRRR 97          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A5J4XY81_9CHLO (Arginine serine-rich splicing factor SR45 transcript I n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XY81_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 2.470e-23
Identity = 50/80 (62.50%), Postives = 67/80 (83.75%), Query Frame = 0
Query:    2 LHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKK 81
            LHV +LTRNV+A+H++EIF ++G V  V+LA+DK VNLP+G+A+VEF  R+EAE AQ  +DGGQLDGN++ VAFVLV +K
Sbjct:  136 LHVGHLTRNVQAEHIQEIFSTFGTVKHVELAMDKAVNLPRGFAYVEFSRRSEAEDAQRLMDGGQLDGNQLSVAFVLVPRK 215          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: I0YZG6_COCSC (RRM domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZG6_COCSC)

HSP 1 Score: 108 bits (270), Expect = 3.270e-23
Identity = 49/81 (60.49%), Postives = 68/81 (83.95%), Query Frame = 0
Query:    2 LHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKR 82
            LHV +LTRNV  DH+KEIF ++G + SV+L+VDK VNLP+G+A+VE+ +R EAE+A++++DGGQLDGN + V FVLV +KR
Sbjct:  130 LHVGHLTRNVTEDHIKEIFSTFGAIKSVELSVDKVVNLPRGFAYVEYKDRDEAEKARVHMDGGQLDGNVLSVQFVLVPRKR 210          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A1V9Z5I0_9STRA (Arginine/serine-rich protein 45 isoform X2 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5I0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.950e-23
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 0
Query:    2 LHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKK 81
            LHV+NLTRNV +DHL EIFG +G V +V+L +DK   LPKG+A+++F +R EAE AQL++  GQ+DGNKI+V FVLV  K
Sbjct:   93 LHVANLTRNVNSDHLSEIFGKFGTVANVNLEIDKSTRLPKGFAYIQFAKRAEAETAQLHMHDGQIDGNKIQVNFVLVQPK 172          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A0E0N7V2_ORYRU (RRM domain-containing protein n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0N7V2_ORYRU)

HSP 1 Score: 105 bits (262), Expect = 5.590e-23
Identity = 44/82 (53.66%), Postives = 68/82 (82.93%), Query Frame = 0
Query:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKR 82
            +LH+ +L+RNV   HLKEIFG++G+V +V+L++D+ VNLP+GY ++EF +RT+AE+A LY+DGGQ+DGN +K+ F L  ++R
Sbjct:   70 VLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSMDRMVNLPRGYGYIEFKKRTDAEKALLYMDGGQIDGNVVKLRFTLAPRQR 151          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A835PDI1_VANPL (RRM domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PDI1_VANPL)

HSP 1 Score: 102 bits (255), Expect = 8.630e-23
Identity = 43/82 (52.44%), Postives = 67/82 (81.71%), Query Frame = 0
Query:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKR 82
            +LH+ +L+RNV   HLKEIF ++G+V +V+L++D+ VNLP+GY +VEF +RT+AE+A+LY+DGGQ+DGN + V F L  +++
Sbjct:   35 VLHIDHLSRNVNEAHLKEIFSNFGEVVNVELSMDRNVNLPRGYGYVEFKKRTDAEKARLYMDGGQIDGNIVSVKFTLAQRQK 116          
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Match: A0A0D9WBU4_9ORYZ (RRM domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WBU4_9ORYZ)

HSP 1 Score: 106 bits (265), Expect = 1.140e-22
Identity = 48/82 (58.54%), Postives = 67/82 (81.71%), Query Frame = 0
Query:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKR 82
            +LHV +L+RNV  DHLKEIF +YG+V +V+L++D+ VNLP+GY +VEF  R++AE+A LYLDGGQ+DGN +KV F L  ++R
Sbjct:   65 VLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRSDAEKALLYLDGGQIDGNVVKVRFALTPQQR 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.100.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q3_ECTSI2.670e-4397.56RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XYG7_9STRA2.770e-3273.17Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A835YNB5_9STRA1.540e-3177.33RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2SUR0_9STRA1.130e-2561.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5J4XY81_9CHLO2.470e-2362.50Arginine serine-rich splicing factor SR45 transcri... [more]
I0YZG6_COCSC3.270e-2360.49RRM domain-containing protein n=1 Tax=Coccomyxa su... [more]
A0A1V9Z5I0_9STRA3.950e-2360.00Arginine/serine-rich protein 45 isoform X2 n=1 Tax... [more]
A0A0E0N7V2_ORYRU5.590e-2353.66RRM domain-containing protein n=1 Tax=Oryza rufipo... [more]
A0A835PDI1_VANPL8.630e-2352.44RRM domain-containing protein n=1 Tax=Vanilla plan... [more]
A0A0D9WBU4_9ORYZ1.140e-2258.54RRM domain-containing protein n=1 Tax=Leersia perr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 1..74
e-value: 8.5E-20
score: 81.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 3..72
e-value: 2.6E-15
score: 56.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..78
score: 16.585409
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..111
e-value: 3.5E-24
score: 87.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..310
NoneNo IPR availablePANTHERPTHR15481:SF0LD23870P-RELATEDcoord: 2..253
NoneNo IPR availablePANTHERPTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1coord: 2..253
IPR034201RNPS1, RNA recognition motifCDDcd12365RRM_RNPS1coord: 2..74
e-value: 3.71823E-36
score: 122.664
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:362052..367431 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.100.1mRNA_P-littoralis_Contig180.100.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig180 359342..368964 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig180.100.1 ID=prot_P-littoralis_Contig180.100.1|Name=mRNA_P-littoralis_Contig180.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=311bp
MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVE
RTEAEQAQLYLDGGQLDGNKIKVAFVLVTKKRRQSPSPRSRDAERRERER
ERAGRGRFAAQPRGVFGNGSGSFGGQGGGSHYGPAAGGGGGGSGGYGAMA
AGPGFRGRDRSPPRGDRRGGSFAGSSYAGRARSPPRRRSSPPRNRRVDSK
RSRSPARRRRSPSPRRRSFGNNRSNRSRSRSRSRSRSRTRRRGRSSSSSS
SGSGSGSGSGSGSGSNRSRSRSAGSSSSSSSSQSGGGGKKRSASRSPPAK
TSPGKATAEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034201RNPS1_RRM
IPR035979RBD_domain_sf