mRNA_P-littoralis_Contig180.28.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5LD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD01_9PHAE) HSP 1 Score: 109 bits (273), Expect = 9.300e-26 Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELS 267
G LV+LGLGWFGGV++RR+H GSR D+RV LH ST MK+ LESYSTD DAA+GAWVLLEV+ +E R+ RRVTTPNVR T L+
Sbjct: 25 GSLVQLGLGWFGGVISRRSHPGSRQENDYRVILHCTESTRSMKMPLESYSTDEDAAIGAWVLLEVDPKERSGRR-RRVTTPNVRLTGLA 112
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE) HSP 1 Score: 104 bits (259), Expect = 9.700e-24 Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHS-DGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELS 267
GVLVKLGL WFGGV++RR+H SR YD+RV LH D ST MK+ LES STD DAA+GAWVLLEV +E G + +RVTTP VR TEL+
Sbjct: 25 GVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLLEVNPKE-GSGRRKRVTTPTVRLTELA 113
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.570e-23 Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEE 207
GVLVKLGLGWFGGV++RRAH SRD YD+RV LHSDGST MKL LESYSTD DA VG+WVLLEVEQEE
Sbjct: 1904 GVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLEVEQEE 1972
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5K105_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K105_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.960e-16 Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 46 TRRAHHGSRDNYDHRVTLHSDGSTS--IMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELS 267
T +H SR YD+RV LH D ST MK+ LESYSTD D A+GAWVLLEV+ +E G R+ +RVTTPNVR TEL+
Sbjct: 18 TSSSHPASRQEYDYRVILHCDESTRKFSMKMPLESYSTDEDVAIGAWVLLEVDPKE-GSRRRKRVTTPNVRLTELA 92
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.590e-13 Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLE 192
G+LV+LG+GWFGG++TR++ +R YD+RV L D ST MKLQLE Y D DA VG+W+LLE
Sbjct: 46 GLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLE 109
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 3.070e-13 Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
GVLV+LG+GWFGG++T++ +R YD+ V L D ST MKL L+ YS D DAAVG+WVLLE V +S RV NV
Sbjct: 61 GVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE------SVSRSGRVRRTNV 137
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12 Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
GVLV+LG+GWFGG++ +++ R YD+ V L D ST MKL L++YS D DAAVG+WVLLE V ++ RV TPNV
Sbjct: 54 GVLVRLGMGWFGGLIIQQSPQ--RHLYDYCVQLEVDHSTRNMKLPLDTYSGDPDAAVGSWVLLE------SVSRAGRVRTPNV 128
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 2.190e-12 Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLE 192
GVLV LG+GWFGGV+TR++ +R YD+ + L D ST MKL LE Y D DA VG+W+LLE
Sbjct: 34 GVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLE 97
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5K1A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A2_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 4.530e-12 Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
GVLV+LG+GW+GG++ +++ +R YD+ V L D ST MKL L+ Y+ D+DAAVG+WVLLE GV +S RV NV
Sbjct: 240 GVLVRLGMGWYGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLSLDMYTGDLDAAVGSWVLLE------GVSRSGRVRRTNV 316
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JRS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS4_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 5.040e-12 Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
GVLV+LG+GWFGG++T+++ +R YD+ V L D ST MKL L+ S D+DAAVG+WVL E + +S RV NV
Sbjct: 37 GVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKCSGDLDAAVGSWVL------RESISRSGRVRRTNV 113 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig180.28.1 >prot_P-littoralis_Contig180.28.1 ID=prot_P-littoralis_Contig180.28.1|Name=mRNA_P-littoralis_Contig180.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp MKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELSLIback to top mRNA from alignment at P-littoralis_Contig180:90195..91339+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig180.28.1 ID=mRNA_P-littoralis_Contig180.28.1|Name=mRNA_P-littoralis_Contig180.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1145bp|location=Sequence derived from alignment at P-littoralis_Contig180:90195..91339+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig180:90195..91339+ >mRNA_P-littoralis_Contig180.28.1 ID=mRNA_P-littoralis_Contig180.28.1|Name=mRNA_P-littoralis_Contig180.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig180:90195..91339+ (Pylaiella littoralis U1_48)back to top |