mRNA_P-littoralis_Contig180.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig180.28.1
Unique NamemRNA_P-littoralis_Contig180.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5LD01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD01_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.300e-26
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELS 267
            G LV+LGLGWFGGV++RR+H GSR   D+RV LH   ST  MK+ LESYSTD DAA+GAWVLLEV+ +E   R+ RRVTTPNVR T L+
Sbjct:   25 GSLVQLGLGWFGGVISRRSHPGSRQENDYRVILHCTESTRSMKMPLESYSTDEDAAIGAWVLLEVDPKERSGRR-RRVTTPNVRLTGLA 112          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW0_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.700e-24
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHS-DGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELS 267
            GVLVKLGL WFGGV++RR+H  SR  YD+RV LH  D ST  MK+ LES STD DAA+GAWVLLEV  +E G  + +RVTTP VR TEL+
Sbjct:   25 GVLVKLGLYWFGGVISRRSHPASRQEYDYRVILHCCDESTRSMKMPLESCSTDEDAAIGAWVLLEVNPKE-GSGRRKRVTTPTVRLTELA 113          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.570e-23
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEE 207
            GVLVKLGLGWFGGV++RRAH  SRD YD+RV LHSDGST  MKL LESYSTD DA VG+WVLLEVEQEE
Sbjct: 1904 GVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWVLLEVEQEE 1972          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5K105_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K105_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.960e-16
Identity = 46/76 (60.53%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   46 TRRAHHGSRDNYDHRVTLHSDGSTS--IMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELS 267
            T  +H  SR  YD+RV LH D ST    MK+ LESYSTD D A+GAWVLLEV+ +E G R+ +RVTTPNVR TEL+
Sbjct:   18 TSSSHPASRQEYDYRVILHCDESTRKFSMKMPLESYSTDEDVAIGAWVLLEVDPKE-GSRRRKRVTTPNVRLTELA 92          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5KHL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.590e-13
Identity = 37/64 (57.81%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLE 192
            G+LV+LG+GWFGG++TR++   +R  YD+RV L  D ST  MKLQLE Y  D DA VG+W+LLE
Sbjct:   46 GLLVRLGMGWFGGLITRQSQERTRHLYDYRVHLDLDQSTRGMKLQLEMYKGDPDAVVGSWILLE 109          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5KA94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA94_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.070e-13
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
            GVLV+LG+GWFGG++T++    +R  YD+ V L  D ST  MKL L+ YS D DAAVG+WVLLE       V +S RV   NV
Sbjct:   61 GVLVRLGMGWFGGLITQQYQKDTRHLYDYCVQLELDQSTRKMKLPLDKYSGDSDAAVGSWVLLE------SVSRSGRVRRTNV 137          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5KHD5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
            GVLV+LG+GWFGG++ +++    R  YD+ V L  D ST  MKL L++YS D DAAVG+WVLLE       V ++ RV TPNV
Sbjct:   54 GVLVRLGMGWFGGLIIQQSPQ--RHLYDYCVQLEVDHSTRNMKLPLDTYSGDPDAAVGSWVLLE------SVSRAGRVRTPNV 128          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JUW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.190e-12
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLE 192
            GVLV LG+GWFGGV+TR++   +R  YD+ + L  D ST  MKL LE Y  D DA VG+W+LLE
Sbjct:   34 GVLVGLGMGWFGGVITRQSQERTRHLYDYHMHLDLDQSTRSMKLPLEMYREDPDAVVGSWILLE 97          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5K1A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.530e-12
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
            GVLV+LG+GW+GG++ +++   +R  YD+ V L  D ST  MKL L+ Y+ D+DAAVG+WVLLE      GV +S RV   NV
Sbjct:  240 GVLVRLGMGWYGGLIIQQSQQDTRHLYDYCVQLELDQSTRKMKLSLDMYTGDLDAAVGSWVLLE------GVSRSGRVRRTNV 316          
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Match: A0A6H5JRS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS4_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.040e-12
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GVLVKLGLGWFGGVLTRRAHHGSRDNYDHRVTLHSDGSTSIMKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNV 249
            GVLV+LG+GWFGG++T+++   +R  YD+ V L  D ST  MKL L+  S D+DAAVG+WVL       E + +S RV   NV
Sbjct:   37 GVLVRLGMGWFGGLITQQSQKDTRHLYDYCVQLELDQSTRKMKLPLDKCSGDLDAAVGSWVL------RESISRSGRVRRTNV 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig180.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD01_9PHAE9.300e-2665.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAW0_9PHAE9.700e-2464.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE1.570e-2381.16Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K105_9PHAE4.960e-1660.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHL7_9PHAE1.590e-1357.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA94_9PHAE3.070e-1351.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHD5_9PHAE1.200e-1251.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUW4_9PHAE2.190e-1256.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1A2_9PHAE4.530e-1249.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRS4_9PHAE5.040e-1248.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig180contigP-littoralis_Contig180:90195..91339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1145
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789869.4524024-UTR-P-littoralis_Contig180:90194..903171680789869.4524024-UTR-P-littoralis_Contig180:90194..90317Pylaiella littoralis U1_48UTRP-littoralis_Contig180 90195..90317 +
1680789869.4817746-UTR-P-littoralis_Contig180:90641..913391680789869.4817746-UTR-P-littoralis_Contig180:90641..91339Pylaiella littoralis U1_48UTRP-littoralis_Contig180 90642..91339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789869.4660988-CDS-P-littoralis_Contig180:90317..906411680789869.4660988-CDS-P-littoralis_Contig180:90317..90641Pylaiella littoralis U1_48CDSP-littoralis_Contig180 90318..90641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig180.28.1prot_P-littoralis_Contig180.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig180 90318..90641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig180.28.1

>prot_P-littoralis_Contig180.28.1 ID=prot_P-littoralis_Contig180.28.1|Name=mRNA_P-littoralis_Contig180.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MKLQLESYSTDVDAAVGAWVLLEVEQEEEGVRKSRRVTTPNVRHTELSLI
SGWATVTFDVSANTAGQGLECGASPSFLFQFLRVGYTAHSTVQGWLVASA
VETCAAV*
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mRNA from alignment at P-littoralis_Contig180:90195..91339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig180.28.1 ID=mRNA_P-littoralis_Contig180.28.1|Name=mRNA_P-littoralis_Contig180.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1145bp|location=Sequence derived from alignment at P-littoralis_Contig180:90195..91339+ (Pylaiella littoralis U1_48)
GGGGTGCTTGTGAAACTCGGACTGGGGTGGTTCGGCGGGGTTCTAACTCG CAGAGCTCACCACGGATCGAGGGACAACTACGACCACCGCGTCACGCTGC ATTCTGACGGAAGCACGAGCATCATGAAGTTGCAGTTGGAGTCGTATAGC ACGGATGTGGATGCCGCAGTTGGGGCGTGGGTGCTGCTAGAGGTAGAGCA AGAAGAAGAGGGGGTGAGAAAGTCCAGAAGGGTGACGACCCCCAATGTTC GCCACACGGAGCTTTCGCTTATTAGTGGGTGGGCGACGGTTACTTTTGAT GTCTCAGCAAATACGGCCGGTCAGGGTTTGGAGTGCGGTGCCTCGCCCTC TTTTTTATTTCAGTTCTTACGAGTGGGGTATACTGCACACAGTACTGTAC AAGGTTGGCTGGTTGCGAGCGCCGTTGAAACCTGCGCGGCTGTTTAGGCC TTTGTCGGTTGTCGAGTTGTACGGCTGAAATGTCGTCAAGAGCTTGTAGA AAACAGGGAACATCAACTTAAAATATGAACGTGGGTGACGAAGCACAAAA AAATAAGGAAACAATGTTTCAAAAAAATCAGCCCAATCTCATCAGCCCGA AAAAATAAGAAAAATTATTTCAAGAAAATCAGCCCAATCTGTCGGCCCGA AAAAATGAGAAAAATCGGTTTAAGAGAAAAATAATTGAAGCTGGTGTTTG CGCCCAAAATAGGAAAATAGGAGTTTGAGCCTCGACCCGAAATTGACGTT TCTTAATTCCGGGCGCCAACTGTACTTGTACCGTTGCAGGTAGCACTCCA GACAACAACTTACTGCTGTAGTCTGCAGCTACCTACTGACTTTTTGTTTG AGTGGAGCGGGAGGAGACTGAACACGATGTTGTAGTCAAATGAACGACGC TGGAAGTACGTTTGCTGTTGGTACTACTGCTGTGACTGTTGTAGTTCGGT GATGCACACGGCGTAGGAAGGTGTATCTTCTTCGGTCTTTCTTGGGTATT CCCTTGTAGTTTATTTCTGTTCATTTTTATATCTTCCTAGGGCTCAGGCG GTTTCTTGTAGGAGGAATGGCCAAAAAAGGGTATACCCGACGGTTTTCCG GCCACTATCGGGTACCTTGCTTGGCCAGCGTCACAAATGGTCTCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig180:90195..91339+

>mRNA_P-littoralis_Contig180.28.1 ID=mRNA_P-littoralis_Contig180.28.1|Name=mRNA_P-littoralis_Contig180.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig180:90195..91339+ (Pylaiella littoralis U1_48)
ATGAAGTTGCAGTTGGAGTCGTATAGCACGGATGTGGATGCCGCAGTTGG
GGCGTGGGTGCTGCTAGAGGTAGAGCAAGAAGAAGAGGGGGTGAGAAAGT
CCAGAAGGGTGACGACCCCCAATGTTCGCCACACGGAGCTTTCGCTTATT
AGTGGGTGGGCGACGGTTACTTTTGATGTCTCAGCAAATACGGCCGGTCA
GGGTTTGGAGTGCGGTGCCTCGCCCTCTTTTTTATTTCAGTTCTTACGAG
TGGGGTATACTGCACACAGTACTGTACAAGGTTGGCTGGTTGCGAGCGCC
GTTGAAACCTGCGCGGCTGTTTAG
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