mRNA_P-littoralis_Contig18.189.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.189.2
Unique NamemRNA_P-littoralis_Contig18.189.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: D8LS01_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS01_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 1.090e-85
Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 2
Query:  371 MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRT 820
            MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYE+GSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLANDVAEMWKTNEAQAL+T
Sbjct:    1 MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYEHGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAEMWKTNEAQALQT 141          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A024GCI7_9STRA (UBC core domain-containing protein n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GCI7_9STRA)

HSP 1 Score: 263 bits (672), Expect = 1.470e-81
Identity = 130/161 (80.75%), Postives = 142/161 (88.20%), Query Frame = 2
Query:  365 LAMAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
            ++  ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYF VVI GP+ SPYENG FKLELFLP+DYPM+PPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLANDVAE WK++EA A+RTA +WT+R A
Sbjct:    1 MSTGASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFQVVIAGPQTSPYENGIFKLELFLPADYPMSPPKVRFLTRLYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAEHWKSDEAGAVRTAADWTRRFA 152          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: H3G9K8_PHYRM (UBC core domain-containing protein n=24 Tax=Oomycota TaxID=4762 RepID=H3G9K8_PHYRM)

HSP 1 Score: 257 bits (656), Expect = 3.130e-79
Identity = 130/157 (82.80%), Postives = 137/157 (87.26%), Query Frame = 2
Query:  377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
            AS LPRRIVKETQRLLAEPV GISATPYEDNLRYF VVI GP+ SPYENG FKLELFLPSDYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLANDVA+ WKT+EA A++ A EWT+R A
Sbjct:    2 ASALPRRIVKETQRLLAEPVAGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPSDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVADHWKTDEAGAVQMAAEWTRRYA 149          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A484ED03_BRELC (UBC core domain-containing protein n=13 Tax=Oomycota TaxID=4762 RepID=A0A484ED03_BRELC)

HSP 1 Score: 254 bits (650), Expect = 2.420e-78
Identity = 128/157 (81.53%), Postives = 135/157 (85.99%), Query Frame = 2
Query:  377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
            A+ LPRRIVKETQRLLAEPV GISATPYEDNLRYF VVI GP+ SPYENG FKLELFLP DYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLANDVA+ WKT+E  A+ TA EWT+R A
Sbjct:    2 ATTLPRRIVKETQRLLAEPVAGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPVDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVADHWKTDEVGAVHTAAEWTRRYA 149          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S3RBI3_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3RBI3_9SPIT)

HSP 1 Score: 251 bits (640), Expect = 1.030e-76
Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = 2
Query:  377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLARA 853
            AS LPRRIVKETQRLL+EP PGISATPY DNLRYFNV+I GP+ SPYE G FKLELFLP +YPMAPPKVRFLTK++HPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLANDVAE+WK NE +AL  A+ WTQ+ A A
Sbjct:    9 ASALPRRIVKETQRLLSEPAPGISATPYTDNLRYFNVIIQGPQGSPYEGGIFKLELFLPEEYPMAPPKVRFLTKMFHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAELWKRNEPKALEEAKTWTQQYATA 158          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S2FBQ7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBQ7_9STRA)

HSP 1 Score: 250 bits (638), Expect = 1.710e-76
Identity = 123/163 (75.46%), Postives = 138/163 (84.66%), Query Frame = 2
Query:  365 LAMAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLARA 853
            +A A   LPRRIVKETQRL+AEPVPGISATPYEDNLRYFN+ + GP  SP+E+G F+LELFLP+DYPMAPPKVRFLTKIYHPN+DKLGRICL+ILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPL N VA++WK +EA AL TA EWTQ+ A+A
Sbjct:    1 MAAADGGLPRRIVKETQRLMAEPVPGISATPYEDNLRYFNIALAGPADSPFESGVFRLELFLPADYPMAPPKVRFLTKIYHPNVDKLGRICLNILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLDNGVADVWKNDEATALATAAEWTQQYAQA 154          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A388KXK6_CHABU (UBC core domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KXK6_CHABU)

HSP 1 Score: 250 bits (638), Expect = 1.830e-76
Identity = 124/160 (77.50%), Postives = 135/160 (84.38%), Query Frame = 2
Query:  368 AMAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
            A   SNLPRRI+KETQRLL+EP PGISA+P E+NLRYFNV+I GP QSPYE G FKLELFLP DYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLA ++A+ WKTNE +A+ TAREWT+  A
Sbjct:    3 ASCNSNLPRRIIKETQRLLSEPAPGISASPSEENLRYFNVMILGPNQSPYEGGLFKLELFLPEDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLAENIAKHWKTNETEAVATAREWTRMYA 153          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A139B0U7_GONPJ (Ubiquitin-conjugating enzyme n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139B0U7_GONPJ)

HSP 1 Score: 249 bits (636), Expect = 2.960e-76
Identity = 123/156 (78.85%), Postives = 133/156 (85.26%), Query Frame = 2
Query:  383 NLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLAR 850
            NLP+RIVKET+RLLAEP PGISA P+EDNLRYF+VVI GP  SPY+ G FKLELFLP DYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLANDVA+ WK NE  AL+TAREWT + A+
Sbjct:    4 NLPKRIVKETERLLAEPAPGISAQPHEDNLRYFDVVIAGPTHSPYDGGMFKLELFLPDDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAQQWKENEKLALQTAREWTGKFAK 150          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S0LHS8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHS8_9EUKA)

HSP 1 Score: 249 bits (635), Expect = 8.170e-76
Identity = 122/158 (77.22%), Postives = 136/158 (86.08%), Query Frame = 2
Query:  377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLAR 850
            A  LPRRI+KETQRLL+EPV GISATPY+DNLR+FNV+I+GP  SPYE G FKLELFLP +YPMAPPKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPLANDVAE WK +E +A++TA+EWTQ  AR
Sbjct:   13 ADLLPRRIIKETQRLLSEPVTGISATPYQDNLRHFNVIISGPGSSPYEGGIFKLELFLPEEYPMAPPKVRFMTKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAEHWKRDEPEAIKTAKEWTQHYAR 161          
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S3LB23_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LB23_9STRA)

HSP 1 Score: 248 bits (634), Expect = 9.070e-76
Identity = 124/159 (77.99%), Postives = 136/159 (85.53%), Query Frame = 2
Query:  371 MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
            MA S LPRRIVKETQRL+AEPV GISATPY+DNLRYF V I GPE SPYE G F+LELFLP+DYPMAPPKVRFLTKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQA         LLSAPNPDDPL N+VAE+WK +EA+A+R A+E+TQ  A
Sbjct:    1 MATSQLPRRIVKETQRLIAEPVAGISATPYQDNLRYFAVAIEGPEDSPYERGVFQLELFLPADYPMAPPKVRFLTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLDNNVAEIWKKDEAEAIRRAKEFTQNFA 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS01_ECTSI1.090e-8592.67UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A024GCI7_9STRA1.470e-8180.75UBC core domain-containing protein n=3 Tax=Oomycot... [more]
H3G9K8_PHYRM3.130e-7982.80UBC core domain-containing protein n=24 Tax=Oomyco... [more]
A0A484ED03_BRELC2.420e-7881.53UBC core domain-containing protein n=13 Tax=Oomyco... [more]
A0A7S3RBI3_9SPIT1.030e-7678.62Hypothetical protein (Fragment) n=2 Tax=Choreotric... [more]
A0A7S2FBQ7_9STRA1.710e-7675.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A388KXK6_CHABU1.830e-7677.50UBC core domain-containing protein n=1 Tax=Chara b... [more]
A0A139B0U7_GONPJ2.960e-7678.85Ubiquitin-conjugating enzyme n=1 Tax=Gonapodya pro... [more]
A0A7S0LHS8_9EUKA8.170e-7677.22Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S3LB23_9STRA9.070e-7677.99Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:813111..821858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS01
Preferred nameUBE2N
PFAMsUQ_con
Model size1940
Max annot lvl2759|Eukaryota
KEGG koko:K10580
KEGG Pathwayko04120,ko04624,map04120,map04624
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0000902,GO:0000904,GO:0001650,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007412,GO:0007416,GO:0007528,GO:0007610,GO:0007625,GO:0007626,GO:0007629,GO:0007630,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008594,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009794,GO:0009888,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010015,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010053,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010992,GO:0010994,GO:0016043,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0021700,GO:0022008,GO:0022607,GO:0022622,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030522,GO:0030534,GO:0031056,GO:0031058,GO:0031098,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031624,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033182,GO:0033365,GO:0033554,GO:0033674,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034644,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0040007,GO:0040019,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042493,GO:0042592,GO:0042742,GO:0043085,GO:0043122,GO:0043123,GO:0043130,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0045739,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045935,GO:0045937,GO:0045977,GO:0045995,GO:0046328,GO:0046330,GO:0046483,GO:0046530,GO:0046686,GO:0048364,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050808,GO:0050851,GO:0050852,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051124,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051258,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051438,GO:0051443,GO:0051603,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060074,GO:0060255,GO:0060341,GO:0061057,GO:0061564,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070304,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0070914,GO:0071214,GO:0071310,GO:0071345,GO:0071347,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0072347,GO:0072665,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090558,GO:0090627,GO:0098542,GO:0099402,GO:0104004,GO:0120036,GO:0120039,GO:0120113,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902494,GO:1902531,GO:1902533,GO:1902914,GO:1902916,GO:1903320,GO:1903322,GO:1903506,GO:1903827,GO:1905269,GO:1905392,GO:1990234,GO:2000008,GO:2000026,GO:2000112,GO:2001020,GO:2001022,GO:2001141,GO:2001252
Exons7
Evalue6.55e-93
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-08_001540.1
EC2.3.2.23
Descriptionprotein modification by small protein conjugation
Cds size492
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.189.2prot_P-littoralis_Contig18.189.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 814382..820780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789868.0535238-UTR-P-littoralis_Contig18:813110..8131671680789868.0535238-UTR-P-littoralis_Contig18:813110..813167Pylaiella littoralis U1_48UTRP-littoralis_Contig18 813111..813167 +
1680789868.0730996-UTR-P-littoralis_Contig18:814068..8143811680789868.0730996-UTR-P-littoralis_Contig18:814068..814381Pylaiella littoralis U1_48UTRP-littoralis_Contig18 814069..814381 +
1680789868.1493304-UTR-P-littoralis_Contig18:820780..8218581680789868.1493304-UTR-P-littoralis_Contig18:820780..821858Pylaiella littoralis U1_48UTRP-littoralis_Contig18 820781..821858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789868.0827055-CDS-P-littoralis_Contig18:814381..8144451680789868.0827055-CDS-P-littoralis_Contig18:814381..814445Pylaiella littoralis U1_48CDSP-littoralis_Contig18 814382..814445 +
1680789868.0938582-CDS-P-littoralis_Contig18:815468..8155551680789868.0938582-CDS-P-littoralis_Contig18:815468..815555Pylaiella littoralis U1_48CDSP-littoralis_Contig18 815469..815555 +
1680789868.1049275-CDS-P-littoralis_Contig18:816131..8161901680789868.1049275-CDS-P-littoralis_Contig18:816131..816190Pylaiella littoralis U1_48CDSP-littoralis_Contig18 816132..816190 +
1680789868.1182702-CDS-P-littoralis_Contig18:816954..8171041680789868.1182702-CDS-P-littoralis_Contig18:816954..817104Pylaiella littoralis U1_48CDSP-littoralis_Contig18 816955..817104 +
1680789868.1301322-CDS-P-littoralis_Contig18:817625..8177161680789868.1301322-CDS-P-littoralis_Contig18:817625..817716Pylaiella littoralis U1_48CDSP-littoralis_Contig18 817626..817716 +
1680789868.1397932-CDS-P-littoralis_Contig18:820739..8207801680789868.1397932-CDS-P-littoralis_Contig18:820739..820780Pylaiella littoralis U1_48CDSP-littoralis_Contig18 820740..820780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.189.2

>prot_P-littoralis_Contig18.189.2 ID=prot_P-littoralis_Contig18.189.2|Name=mRNA_P-littoralis_Contig18.189.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYE
NGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPA
LQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRT
AREWTQRLARATA*
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mRNA from alignment at P-littoralis_Contig18:813111..821858+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.189.2 ID=mRNA_P-littoralis_Contig18.189.2|Name=mRNA_P-littoralis_Contig18.189.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8748bp|location=Sequence derived from alignment at P-littoralis_Contig18:813111..821858+ (Pylaiella littoralis U1_48)
CGCACCTCTCGAGCTTTGGCTGTCCCGTCGACCGTATTTCGCCGGCGGCA CTCAAAGGTAAATAAGAGCTCCGAATGCAAGCTTCAGCCCCGTAAAGCCC ATACATAAGAGTCAAGACGACCGTCGGACACGACCACCTCGGTTTCTGCT GTTTCTCTACTTGCATATCATAGCAGCAGTGCATCTACAGCGAGAACGGA GGGGCAGAAGGTCGAATTGTACGTGTCACTGATCATTCAGGAGACACAAT AGGGTAGATACAGCTAGCTTCCTTTTCTTCCCGCCGGCTATCGAGTGGCT GCGATTGTTGACAGGCCCCGACGCCCCCGACACGCGATAGAAAGGCCAAG TGTACGTATCATTTGACTGCTGCAGAGAAGCCGTCTCAAGGATGAAGTCG AACGTGTCGCCCTCAAAATAACTAAGAACAAGTTTGTATCCAGCATCCGC ATCGCATTTCAATCCTATTATATAATACTAATACTATAAAATCCATATGA TATGAAATCACTATTACAATACAGGCAGTGCCAGGGTTTCATCATCTTGT CAAGGACACACCATTACAGGTCGAAGCTTACGTCTCCCTTTCCTGCTCGT GTACCGCCTTGTCTGTCTGGTAGCCCCCAGAGACAAATCGTTTTGTGGCA CTTGTGACATGAAATCTTCTGCTCCCTCCAAAAGCTCACACACGAGGCGT GACACCTGATTTTCTTTCTCCAGCCTATTTCAATCGTCTTTCATATATGC AGCCCCACTTGGTATCATTCAATCGTCTATGCACTCCCACTTGGTGTCAT CTTCGTATTCAAATCATCGTGTACCCCCCGCTACCGCTACTGCTGTTGCT GTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACACTGCTGCCTGTTG CGTCGGCGGGCACACACACACACACATTGAAAACATCCTGCATCTCTGCT TCGAGAAGTCTTTATTCGGTACCATATAAGGCCATCTCCACCACCACCCA CGGCGTCAGCCCTAGCGTCTGCTGCTGCTTCACCACCTACGTTCAGCCAG AGACTACGAGAGGAGCACAGACAAGGGTACAGGAGTGCAGCACAGCAAAT AGCTAAATATCCAACACCCGAAGGGGGAGGTTGAGTGCCTGGGCAGCTGT CTGTCGGTCTGTTTGTCCGAGTCACACGTCGATACGGCAACAACTCCGAT CGCAACAACAGCAGCAGCATCAGCAGAGTCACTTTTTAGCAGCGGCCCGT TCCTGCTAGCGAAAGTTGGCGATGGCGGCTAGCAACCTGCCCCGACGGAT TGTCAAGGAAACCCAGAGGCTTCTCGCCGAACCAGGTGTGTCTGTCTGTC TGTCTGTCTGCCTGCCTGCCTGTCTGTCTTGGCTGTCTGTGTCTACTCTC ACGTCTGTGCGGCGTACATGATGCGTCTATTCTGTCTGGTTGGCCGTGCC GGTGTCTTGGGGTCTAGGCCTGGGTCTGGGTGTTTGTGCATCTTTTTTTC TATATTTTTCTGTATCTTTCGTCTGTCCCCACGCCTCGCTGGTCAATTTT TTTCTTTTTTTATGGAGCGCATGCGCATGTTCAAATTTCTTCACACTCGT CTCGTATCGTCAGCAGCAGCACGGCACGCTGGTCGCCCGCCCCTGTTTCC TCTCTCCTCGCGTATTCTTACGATACATATACACCTAACTCTTCAACTCG CTGTACAAACACAAGTTCGCTGGTTCCAGGCGGATCAATTGGCTCGCGAT CTTTTTGAACCGCACATCTGGCCACTCCTGTAGGTCCAGTTCGAAAAGGC CTCAAATTTCGACAGGTTCAAAATGCTCACTACCCCTACATGCCGTGTAC GTTATGAAACGTCGTGCGCGTGTGTGCGGCAATTACAGTGTACATAGCGT GGTCGTTGATTTCTCTCAACTGAGTGGCAGATATGCGGTCAAAGATCCCT GCATCAGTCGGCACAGGTCGAGGCAATCAGAGTGTGTACAGCATTGTCCC CGGTGGCCGTCCGCCCCGCTGGAAGCGGCGCTGTCGTACACCGCCGCGCA CATGGGATTGCGGACTGCTGTGCACGAGGCCTTCATTTCACAAAATTAGT ACTTCGTAGGAAATAAGTGAAAAGATGCTTGCTCCGTCTGCTTCACACAA AATAAATAAAAATAAAAAACGAGAAGAATATTAAATTTCGATCACCCTCC TTCTCCGCTGTTGGACTTGGCACATGTCGTCTGTCTTCGGCGGATTTCAC CTTGACCTGCACGTTTGGGGCCTTTATTTACCCGTTTTTTTTTACACCCG CCGCCGGCTCTGCTCGTGTGCGTTTTTGAAAAACAAAAACGACGCAACAA ACCAACAGTACCTGGCATAAGCGCCACTCCGTACGAGGATAACCTGCGCT ACTTCAACGTGGTCATCACTGGACCAGAGCAATCGCCGTACGAAAGTGAG GAGAGGAGGGGTTTCGTTCCGAGCCTGCGTCAGTAGATAGTCGGGGAGAG AGCCGGGGGGTGGGGAAGCTGCGGGACCCAATTGGTCCTTGCCTTGAATG TCTTTGATCGTTGACGACGCATCCAATGATGTCGAGATGGACCAACACTC AAGGCGCGCTGTAGCGTTTTCGCCAGTCTTGTGAAACACAGAAACCTCTT GCTGATACTAGAGACTTCTTTTGTTGGTGAAGTGGGGGGGGGGGTTAGCT CCTGTTGGTACGTATTCAGCCGTGTCCGACACGATGCTCAGCATCGCAAA TCATGAGGGGAGCAGAGGCAGCGGTTTCCTTTTTTGTTCTTCTCAAAAGC CACTCAACAAGGGAGATGGAGCGACGGGCTCTCTTACCTCCCCTTCCTCT CCCAGCGCTCACCTAGGTACACATCGCACTTGTCGAGAACCTCTCAACTC TTCTGAAAATCTCCCACGAGCCGGACTGAAGGGAcCCCCCCCCCCTTCCT TCCCGTACCTTTGAAACTGGCACCGCCCGTCACCGGCTCTTCGTGTCTTT GCGCGGGGAATCACCTCGCAGATGGATCGTTCAAGCTGGAGCTGTTCCTG CCATCTGACTACCCAATGGCACCCCCGAAGGTGTCAAAACAAATTTATCA AGCAAGACCAGGGTGACATGCGATGAGGCAGACAAGAAGTTTTCTCTACT CTCTTTCTTGCGGTTTGCTCTGACCGTTACCGTTACCGTTACCGGTCAGA GGTTGAATTTTACCTCGTCGCTTGGCTGCTGTAGCGTTTCCGTCTCAGAT TCCCCCCCGTCCCTTTTTTGCTGCTTGCTGCTTGCTGCTTGCTTCTGCTT TTGCCGCGGGTTCAGTCGTTCCTGTTCATCTTTATTCGTGGTTCATGTGT GTTCAAGCGATAGGCATACAAACAGTAGCCGACATACCAGCGAATCGTTA CTCCCCGACGTGATGACATCCAAAAAACACATCATAGCATGAGCACATGC AACCGCTGGTGTTTGCTGAAGTATTTATTTCCTCGCCTGCACCCATGTAT GCTCGCACGTGCATAAATACTGGTTGCAGGCACGAACATCAATTCCATGC TCGACGCCACACCGGACCCCGGGGTCGCTTTTTGTCCCATCGCTCTACCG CATCTCCTGGCAGTTCCTGGCTTTCATGCTTCGAAGTACTTTTGTATGAA GCGCTCGATAAAGTGTGTGTATCTGTGTGCATCCCCCACACTATCTTCGG TACAATCACCCCACATTTCCTTGTTCTCCTGATTGACAAAACAAATCAAG CCTATCATATGTACTATAATCATGAAAATTTGACCGTTCATTATTTGCGC GTTCGGGGACCGCACGGCCCTGCCGCCGTTGATGGTCAACACAGGTGCGC TTCCTGACGAAAATCTACCACCCGAACATCGACAAGCTGGGCCGCATCTG TCTCGATATCCTCAAGGACAAGTGGTCTCCCGCCCTCCAGATCAGGACAG TGCTTCTCAGCATCCAGGCAAGTACTTCGTTTATACAATGTACCGTGGTA TTTCGTCATATGTCGCTACATTTGTGTCGTACTTCGAGTAAAAATCGGGA GGTTCCTGAGTATCAACCCCAGGAACGGACGTCTTTTTTTTTAATATATG TATCTCGGATTATTTTTTTGGAAAAAACTTGCATGTATATTCGAATTTCG CGACCCCCCTAGTAGTTCACGAGGCTTGCGGGAGCTAGCGAAGAGAGACA AGTGACGTTCGATGGTACAGCTTCCTTGACATTTTTTATACCATCTCTGG TTCCAGGATTTCTGCGAAAGTCTTGTCCGTCGTTGAGATCCAAGTATTTG TGCTGTCCGTCGTCCGTCCAAACGCCTGTTTCTGTTTTGTCGTCGTCGTG CGCCCTGTTTTTTTTTTTTTGTTGTTTGTCTTTTTGTTATTTTGTTATTT TGTTATTTATTTGGGGGAAATTTCGGATTTTCAAAAATTCCCTATTTTCG TGATTTATTTGGATACTGGAAATTCGCGTGGGTGGGTGGGGGGGGGGGGG GGGTTGTTCCTGCAGGCACTGCTCTCGGCCCCCAATCCGGACGACCCGCT CGCGAACGACGTCGCAGAAATGTGGAAAACAAACGAGGCTCAGGCGCTGC GGACAGGTGTGCGTTGTTCTTCATGTGTGGAATGTAAAACATGTGCATGT ATCATATCATAGGCTGGATGTGTGTGTGCGTGTGTGCGCGGGCTGCATGG TGTGTTGCTTGTGTGGATGGGCGCGCCCGCAGGCCGCCTCCTACGCACGA CGCGGTAGTGTGCGCGTGACATCTCATCTTGCGCACGTAAGGTCACCGAA AAGACCCCCGCCGGCGGTCACATCGCCCAACCAGCGTCACACATGTGTAT GATAGAGGGAACAGCAGTCATTGGGTGGATCAAAGCACGTGGAAGTTTGA AAACCAGTCACAGCTCTCAGGAGTATGCTCTGGTCGTGGTGCGCTCGAAA CAAGCACCTCGTGTGGGGTGAGCCAAGCGCGCCCGTTGTCCGAGGTATAC GTGTACTGCCGCAAGCGTGAAGCCCAAGTTAGATTGACGCTTTGCGACTG GCGTGTTACACCAGAGAACGCCAACACCCTTGTACATTAGTTTAAGTTTT TCGACCGTCCATTCTGTGCGTCCGTACACGAGTTACCTGCAGGCGTAACG GACAGCAGTAGCGCCTTTTTCGTGGCGATCAGGTAGAAACAAAATACTTG CTCTCTGTGTGACCTTCCTGTCTGTCGTGACTACGACTGACGCGCACGCG TACACCGAAAAGTGTAGAATGGTGTCCTGAGTGGATGAGAGACAACACAC ACACAAATAACGCATACCAGCACCCACATTCGGTTGTATCGACGTATCAT ATGATGCATGCAGAGTGTTGAGTTCCCCTGGGTCTCAGTTTGTCCCTTTC ATGCCTGTCTGGAGTAACTCCTTTCCGAGTCTACGCAGCACGAACCTCCT CCCCCCCCCCCCCATCTCCTTCAGCCACCCACCCTTGCTCTCGTAGTAAT GTGTCGGAATGTTGCCCCCCCCACCGAAGCGTTTCTTTGGGATGCCGCGC GCGTTTTTCGTGCCTCCCGTCCAACTCACCAAACAAGCACCTCGAGACGC TTATGATAGCGCTCAGCGCGTACCAGGGACCGACCTGCCCGGCGAACGCG CGACGCCCTCCGCCCCCGGCGTAAAGTAGTGGCAGTACTCGAAGGGGTTC GAAGTTCTCTCGCATTACAACTGTATCGTATAGTTGTACAGAGTCCAATA GGGTTAAGCGCAAGCCTCTTACACGTACTTTGGCCGAGCTTTTATCAGTC AGCCTGCTACAGGCTAAAATGATGCTATATCTCCTACACGAATAGCTTCG ATACAACAGAAAACAGTACGAGTACGTGTTATATTATATATATCCGTGCC ACGATTGTGATCTTCCTGAAAAAAAGTAGTGTTCCAACCATTCTGCAAAT TTTTGTCAAAAAAAAAAAAGAGCCCAGAAGTAAAAAAATCGTCAAAATCA CTTGATTTTAGACGTAACCTTGGCCGCCACCATGACTTGACTCTTCACAC GTCGAGCACCCCTGTATATAGGTATATAGGTAGTACTCCGAAGTACGTGA GGAGCTGCGAACTCCAAATCCCTTCGGATTCACAAAAGGCGGTCAAAAAT CATGAAATCTCATACTTCGAAGTATATTTCACGTTATTCATCTCTTGAGA GCGCGGGTGCTGCCGTGCGTAAAAAAGTGAGTTGGCAGCCCCCTGTCTTG GGACTCCGAAGCACAAGAGGCTGACAACAACACTCCATACCCCAATACCC CACCTACCGCCGAGGAGGATATCCCCCCGAAAGTTGGCCGTTTTGCCCCA AAACCATCGAAATGCATTCTTCTGCCTGGCGGGCTAAAAAATGAAAACAA AAAAAATGGAGACTTTTGTCTCCTTTTTTTTTTTTTTACAAACAACAGGA CGCAGCGCAGCGTAAACGCTCTAGCGTGACATGAGGCCACTTCACGCGAC GCCTGCTGAAAAATGTCAAGCACACAGCAAGCATCCTCGTTTGTTGCATT CCCCAACGATGTACGTACGCGTCGGCGGAAGGGAGAGGGTGGGGTGCAAA AGGCTTGAAATCAGGCAACCTCTTAGTCCGTTTTCGTCATTAGTTTTTTT CTGTTGTGGTTTCAGCCATTGTTTCAGCTGTTGCTATACAAGAGAGACAC ATATGTGCACACCGCCATTCCGCCAGCACGCACGGACCAAGCCTTGAGCC AGTTGTGCCCACGCTCTTGATGTTGCGATCAGTCACTTCGGCCAAGAAGC AGACGGTTAAGCAAGTCGTAAATGCATGCAGCAATATAGTACAAATCGTG GTCCAAAGTACCCCAAAAGCCGAAAGCGACGAAAAAAGCTCGTTAAAACA CAGCTTCCCACACGCATATCGCTGTTTGTTTGGTCCTTGAGCGCTCGCTT TACGAATCCCACATCCAATAGCGCAAGGGACAGCAGCTCAGGACCTCTCT AGTTCACCGACGGCGGCGAACCTGGCGCTTCCTCTTCCTCATGTATCCCA GCAGGAGCATGTTTTCCGTCACTGAAGAGTTGAAAAGAGTTTGGTTTCAT GCAGCGGTTTAGTTTTCTCAGACTCAGAAAATTCCAACAGTACAGCAGTC GTATCCAATACCGCCCCTATGGCGCTGGTGAAACCAAGCACCGATGCAAC TGACACTCGTCGGACATGCTCGGCACGCCCTACTGGCGGTGCGCTCGTCG TATGTTTTGGATGCGGCACAAGAAGGCTTCAAGCGCCAGCCTTGTACTGT GTGTGTGCGTGACTGGCCGGGTACACACTCGCTCAGACAATTGTATTTGG GAACTCCTGAGACATGACAGGACCGATTGTCGAGATTCTGTTGCGCGATA GACGTTCCATCTAGAACGATTCCGGACGCCTGTCGAAAAAATTATTGCAC AAAAAATTACGATTGACCACCTACTGTTCCCTGTTACAACCTGTCACAAA GCAACTTTTATCTGTATATCCGTACTGCTGTGCTGCACTGCCGTGTACGG TTGTGCATGCCACTGATCCCCCCGCCCCCGCCCGTTTCTGCGTTGCCGTC AACCCCAAACGCCGCCCTCCGTTTGTCAGCGCGGGAATGGACCCAGCGGT TGGCGAGGGCCACCGCGTGATGACCGTTCGAAAAAACGTTCGAGAGAACG TTCTGGAGATCGCCCTGGCCCATGTTTGACGATGGTGATGGCAAGCAAGG CGTGGGGGGGGGCAAGACGCGGAAGGCGAGCAAAGCAAGACCCGCCATGG ACGGTGATAGACGGAAGGATTAGTCGATTTCGTTTTACGTCGCGTTTGCA GCGCGCGCATGCAACACCCGGACGGCTGCGGCGTTTTTTTGGAGGTGGAT GGAAATGGAAGAGGAGAGCGGTGGGCGGCACCGGGGAGGGGGCAGAGTGG GGGTGGGCGGTGGTCATGAAAGCTTTTTGGTCGTATCGTATGAACTGGTA TGGTCAGAGTTCTTAGGGGACCACGATATTTCATCCTCCTGTAATTGATG ATTGTCTTTCCAGAGAGATGAGGTGGGGGTGTGACGCCGCTCGCACGGTA ACGACGATAACGACGACGACGAAGAAGACGAAAAATGTGATGAGCGTTCC TGTTTTTCGTTCTTTTTTTTACCGTTGGGAAAAAAAAACGATAAAAACTT GAAACCTTTAGGATGACGTCCTCTGTGTTTTTGCGCCCGTGCGCCTTCGA CGATCGATGATTTGTTTTTCCGAACGAATTTTGTTTTTTGTGTGTTTTTT GTGTTTTTGTTTTTTTTGCCCTCGCGTACTGATGTCATCTGCTCACATGG GTATATTTTTTTCGTCTTCATCGACCGTAATCTTGTTGGGAGATGGAAGC TGTCAAGGCAAAGCACAACCAAAGGGGAGGAAAGGCGTCAGCGATTTGGT TTTGCTGATTATCGTGTGACATATACACTACGTTACAAATGGTGTGTCTT GTGGTGAGTGCAGTGTGAGAAAGGACGATTGTTTTTCGGAGATCCGCTGG CAGGGTCGTTGGTTCAATACAGCGCACGGGGCGGGGTTATGTGGGAGTGG CGATACTCGTTTGATCGCCACAGCAAGTGTGGTTTTATTCCGGCTCGCCT TGTTTCTCGTAAACTGCTGAAGTATTGTTGATTGGTTTCAGGTGTGTCTT AAAAAAACTCTGTTTTGAACGCCCCTATAAATTGCGACATGCCGAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:813111..821858+

>mRNA_P-littoralis_Contig18.189.2 ID=mRNA_P-littoralis_Contig18.189.2|Name=mRNA_P-littoralis_Contig18.189.2|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig18:813111..821858+ (Pylaiella littoralis U1_48)
ATGGCGGCTAGCAACCTGCCCCGACGGATTGTCAAGGAAACCCAGAGGCT
TCTCGCCGAACCAGTACCTGGCATAAGCGCCACTCCGTACGAGGATAACC
TGCGCTACTTCAACGTGGTCATCACTGGACCAGAGCAATCGCCGTACGAA
AATGGATCGTTCAAGCTGGAGCTGTTCCTGCCATCTGACTACCCAATGGC
ACCCCCGAAGGTGCGCTTCCTGACGAAAATCTACCACCCGAACATCGACA
AGCTGGGCCGCATCTGTCTCGATATCCTCAAGGACAAGTGGTCTCCCGCC
CTCCAGATCAGGACAGTGCTTCTCAGCATCCAGGCAAGTACTTCGTTTAT
ACAATGTACCGCACTGCTCTCGGCCCCCAATCCGGACGACCCGCTCGCGA
ACGACGTCGCAGAAATGTGGAAAACAAACGAGGCTCAGGCGCTGCGGACA
GCGCGGGAATGGACCCAGCGGTTGGCGAGGGCCACCGCGTGA
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