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|
Homology
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: D8LS01_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS01_ECTSI) HSP 1 Score: 275 bits (702), Expect = 1.090e-85 Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 2
Query: 371 MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRT 820
MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYE+GSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLANDVAEMWKTNEAQAL+T
Sbjct: 1 MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYEHGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAEMWKTNEAQALQT 141
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A024GCI7_9STRA (UBC core domain-containing protein n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GCI7_9STRA) HSP 1 Score: 263 bits (672), Expect = 1.470e-81 Identity = 130/161 (80.75%), Postives = 142/161 (88.20%), Query Frame = 2
Query: 365 LAMAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
++ ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYF VVI GP+ SPYENG FKLELFLP+DYPM+PPKVRFLT++YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLANDVAE WK++EA A+RTA +WT+R A
Sbjct: 1 MSTGASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFQVVIAGPQTSPYENGIFKLELFLPADYPMSPPKVRFLTRLYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAEHWKSDEAGAVRTAADWTRRFA 152
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: H3G9K8_PHYRM (UBC core domain-containing protein n=24 Tax=Oomycota TaxID=4762 RepID=H3G9K8_PHYRM) HSP 1 Score: 257 bits (656), Expect = 3.130e-79 Identity = 130/157 (82.80%), Postives = 137/157 (87.26%), Query Frame = 2
Query: 377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
AS LPRRIVKETQRLLAEPV GISATPYEDNLRYF VVI GP+ SPYENG FKLELFLPSDYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLANDVA+ WKT+EA A++ A EWT+R A
Sbjct: 2 ASALPRRIVKETQRLLAEPVAGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPSDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVADHWKTDEAGAVQMAAEWTRRYA 149
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A484ED03_BRELC (UBC core domain-containing protein n=13 Tax=Oomycota TaxID=4762 RepID=A0A484ED03_BRELC) HSP 1 Score: 254 bits (650), Expect = 2.420e-78 Identity = 128/157 (81.53%), Postives = 135/157 (85.99%), Query Frame = 2
Query: 377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
A+ LPRRIVKETQRLLAEPV GISATPYEDNLRYF VVI GP+ SPYENG FKLELFLP DYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLANDVA+ WKT+E A+ TA EWT+R A
Sbjct: 2 ATTLPRRIVKETQRLLAEPVAGISATPYEDNLRYFQVVIAGPQSSPYENGIFKLELFLPVDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVADHWKTDEVGAVHTAAEWTRRYA 149
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S3RBI3_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3RBI3_9SPIT) HSP 1 Score: 251 bits (640), Expect = 1.030e-76 Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = 2
Query: 377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLARA 853
AS LPRRIVKETQRLL+EP PGISATPY DNLRYFNV+I GP+ SPYE G FKLELFLP +YPMAPPKVRFLTK++HPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLANDVAE+WK NE +AL A+ WTQ+ A A
Sbjct: 9 ASALPRRIVKETQRLLSEPAPGISATPYTDNLRYFNVIIQGPQGSPYEGGIFKLELFLPEEYPMAPPKVRFLTKMFHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAELWKRNEPKALEEAKTWTQQYATA 158
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S2FBQ7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBQ7_9STRA) HSP 1 Score: 250 bits (638), Expect = 1.710e-76 Identity = 123/163 (75.46%), Postives = 138/163 (84.66%), Query Frame = 2
Query: 365 LAMAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLARA 853
+A A LPRRIVKETQRL+AEPVPGISATPYEDNLRYFN+ + GP SP+E+G F+LELFLP+DYPMAPPKVRFLTKIYHPN+DKLGRICL+ILKDKWSPALQIRTVLLSIQA LLSAPNPDDPL N VA++WK +EA AL TA EWTQ+ A+A
Sbjct: 1 MAAADGGLPRRIVKETQRLMAEPVPGISATPYEDNLRYFNIALAGPADSPFESGVFRLELFLPADYPMAPPKVRFLTKIYHPNVDKLGRICLNILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLDNGVADVWKNDEATALATAAEWTQQYAQA 154
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A388KXK6_CHABU (UBC core domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KXK6_CHABU) HSP 1 Score: 250 bits (638), Expect = 1.830e-76 Identity = 124/160 (77.50%), Postives = 135/160 (84.38%), Query Frame = 2
Query: 368 AMAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
A SNLPRRI+KETQRLL+EP PGISA+P E+NLRYFNV+I GP QSPYE G FKLELFLP DYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLA ++A+ WKTNE +A+ TAREWT+ A
Sbjct: 3 ASCNSNLPRRIIKETQRLLSEPAPGISASPSEENLRYFNVMILGPNQSPYEGGLFKLELFLPEDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLAENIAKHWKTNETEAVATAREWTRMYA 153
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A139B0U7_GONPJ (Ubiquitin-conjugating enzyme n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139B0U7_GONPJ) HSP 1 Score: 249 bits (636), Expect = 2.960e-76 Identity = 123/156 (78.85%), Postives = 133/156 (85.26%), Query Frame = 2
Query: 383 NLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLAR 850
NLP+RIVKET+RLLAEP PGISA P+EDNLRYF+VVI GP SPY+ G FKLELFLP DYPMAPPKVRFLT+IYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLANDVA+ WK NE AL+TAREWT + A+
Sbjct: 4 NLPKRIVKETERLLAEPAPGISAQPHEDNLRYFDVVIAGPTHSPYDGGMFKLELFLPDDYPMAPPKVRFLTRIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAQQWKENEKLALQTAREWTGKFAK 150
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S0LHS8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHS8_9EUKA) HSP 1 Score: 249 bits (635), Expect = 8.170e-76 Identity = 122/158 (77.22%), Postives = 136/158 (86.08%), Query Frame = 2
Query: 377 ASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLAR 850
A LPRRI+KETQRLL+EPV GISATPY+DNLR+FNV+I+GP SPYE G FKLELFLP +YPMAPPKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPLANDVAE WK +E +A++TA+EWTQ AR
Sbjct: 13 ADLLPRRIIKETQRLLSEPVTGISATPYQDNLRHFNVIISGPGSSPYEGGIFKLELFLPEEYPMAPPKVRFMTKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLANDVAEHWKRDEPEAIKTAKEWTQHYAR 161
BLAST of mRNA_P-littoralis_Contig18.189.2 vs. uniprot
Match: A0A7S3LB23_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LB23_9STRA) HSP 1 Score: 248 bits (634), Expect = 9.070e-76 Identity = 124/159 (77.99%), Postives = 136/159 (85.53%), Query Frame = 2
Query: 371 MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYENGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRTAREWTQRLA 847
MA S LPRRIVKETQRL+AEPV GISATPY+DNLRYF V I GPE SPYE G F+LELFLP+DYPMAPPKVRFLTKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQA LLSAPNPDDPL N+VAE+WK +EA+A+R A+E+TQ A
Sbjct: 1 MATSQLPRRIVKETQRLIAEPVAGISATPYQDNLRYFAVAIEGPEDSPYERGVFQLELFLPADYPMAPPKVRFLTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQA---------LLSAPNPDDPLDNNVAEIWKKDEAEAIRRAKEFTQNFA 150
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D8LS01 |
| Preferred name | UBE2N |
| PFAMs | UQ_con |
| Model size | 1940 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K10580 |
| KEGG Pathway | ko04120,ko04624,map04120,map04624 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000724,GO:0000725,GO:0000726,GO:0000729,GO:0000902,GO:0000904,GO:0001650,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007412,GO:0007416,GO:0007528,GO:0007610,GO:0007625,GO:0007626,GO:0007629,GO:0007630,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008594,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009794,GO:0009888,GO:0009889,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010015,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010053,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010638,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010992,GO:0010994,GO:0016043,GO:0016310,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0021700,GO:0022008,GO:0022607,GO:0022622,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030154,GO:0030163,GO:0030182,GO:0030522,GO:0030534,GO:0031056,GO:0031058,GO:0031098,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031624,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032182,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032872,GO:0032874,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033182,GO:0033365,GO:0033554,GO:0033674,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0034644,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0040007,GO:0040019,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042493,GO:0042592,GO:0042742,GO:0043085,GO:0043122,GO:0043123,GO:0043130,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0045739,GO:0045787,GO:0045859,GO:0045860,GO:0045931,GO:0045935,GO:0045937,GO:0045977,GO:0045995,GO:0046328,GO:0046330,GO:0046483,GO:0046530,GO:0046686,GO:0048364,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050808,GO:0050851,GO:0050852,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051124,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051258,GO:0051276,GO:0051338,GO:0051347,GO:0051403,GO:0051438,GO:0051443,GO:0051603,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060074,GO:0060255,GO:0060341,GO:0061057,GO:0061564,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070302,GO:0070304,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070727,GO:0070887,GO:0070914,GO:0071214,GO:0071310,GO:0071345,GO:0071347,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0072347,GO:0072665,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090558,GO:0090627,GO:0098542,GO:0099402,GO:0104004,GO:0120036,GO:0120039,GO:0120113,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902494,GO:1902531,GO:1902533,GO:1902914,GO:1902916,GO:1903320,GO:1903322,GO:1903506,GO:1903827,GO:1905269,GO:1905392,GO:1990234,GO:2000008,GO:2000026,GO:2000112,GO:2001020,GO:2001022,GO:2001141,GO:2001252 |
| Exons | 7 |
| Evalue | 6.55e-93 |
| EggNOG OGs | COG5078@1|root,KOG0417@2759|Eukaryota |
| Ec32 ortholog description | Ubiquitin-conjugating enzyme/RWD-like |
| Ec32 ortholog | Ec-08_001540.1 |
| EC | 2.3.2.23 |
| Description | protein modification by small protein conjugation |
| Cds size | 492 |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko03400,ko04121 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789868.0535238-UTR-P-littoralis_Contig18:813110..813167 | 1680789868.0535238-UTR-P-littoralis_Contig18:813110..813167 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig18 813111..813167 + |
| 1680789868.0730996-UTR-P-littoralis_Contig18:814068..814381 | 1680789868.0730996-UTR-P-littoralis_Contig18:814068..814381 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig18 814069..814381 + |
| 1680789868.1493304-UTR-P-littoralis_Contig18:820780..821858 | 1680789868.1493304-UTR-P-littoralis_Contig18:820780..821858 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig18 820781..821858 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789868.0827055-CDS-P-littoralis_Contig18:814381..814445 | 1680789868.0827055-CDS-P-littoralis_Contig18:814381..814445 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig18 814382..814445 + |
| 1680789868.0938582-CDS-P-littoralis_Contig18:815468..815555 | 1680789868.0938582-CDS-P-littoralis_Contig18:815468..815555 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig18 815469..815555 + |
| 1680789868.1049275-CDS-P-littoralis_Contig18:816131..816190 | 1680789868.1049275-CDS-P-littoralis_Contig18:816131..816190 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig18 816132..816190 + |
| 1680789868.1182702-CDS-P-littoralis_Contig18:816954..817104 | 1680789868.1182702-CDS-P-littoralis_Contig18:816954..817104 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig18 816955..817104 + |
| 1680789868.1301322-CDS-P-littoralis_Contig18:817625..817716 | 1680789868.1301322-CDS-P-littoralis_Contig18:817625..817716 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig18 817626..817716 + |
| 1680789868.1397932-CDS-P-littoralis_Contig18:820739..820780 | 1680789868.1397932-CDS-P-littoralis_Contig18:820739..820780 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig18 820740..820780 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig18.189.2 >prot_P-littoralis_Contig18.189.2 ID=prot_P-littoralis_Contig18.189.2|Name=mRNA_P-littoralis_Contig18.189.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
MAASNLPRRIVKETQRLLAEPVPGISATPYEDNLRYFNVVITGPEQSPYE NGSFKLELFLPSDYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPA LQIRTVLLSIQASTSFIQCTALLSAPNPDDPLANDVAEMWKTNEAQALRT AREWTQRLARATA* back to topmRNA from alignment at P-littoralis_Contig18:813111..821858+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig18.189.2 ID=mRNA_P-littoralis_Contig18.189.2|Name=mRNA_P-littoralis_Contig18.189.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=8748bp|location=Sequence derived from alignment at P-littoralis_Contig18:813111..821858+ (Pylaiella littoralis U1_48) CGCACCTCTCGAGCTTTGGCTGTCCCGTCGACCGTATTTCGCCGGCGGCA
CTCAAAGGTAAATAAGAGCTCCGAATGCAAGCTTCAGCCCCGTAAAGCCC
ATACATAAGAGTCAAGACGACCGTCGGACACGACCACCTCGGTTTCTGCT
GTTTCTCTACTTGCATATCATAGCAGCAGTGCATCTACAGCGAGAACGGA
GGGGCAGAAGGTCGAATTGTACGTGTCACTGATCATTCAGGAGACACAAT
AGGGTAGATACAGCTAGCTTCCTTTTCTTCCCGCCGGCTATCGAGTGGCT
GCGATTGTTGACAGGCCCCGACGCCCCCGACACGCGATAGAAAGGCCAAG
TGTACGTATCATTTGACTGCTGCAGAGAAGCCGTCTCAAGGATGAAGTCG
AACGTGTCGCCCTCAAAATAACTAAGAACAAGTTTGTATCCAGCATCCGC
ATCGCATTTCAATCCTATTATATAATACTAATACTATAAAATCCATATGA
TATGAAATCACTATTACAATACAGGCAGTGCCAGGGTTTCATCATCTTGT
CAAGGACACACCATTACAGGTCGAAGCTTACGTCTCCCTTTCCTGCTCGT
GTACCGCCTTGTCTGTCTGGTAGCCCCCAGAGACAAATCGTTTTGTGGCA
CTTGTGACATGAAATCTTCTGCTCCCTCCAAAAGCTCACACACGAGGCGT
GACACCTGATTTTCTTTCTCCAGCCTATTTCAATCGTCTTTCATATATGC
AGCCCCACTTGGTATCATTCAATCGTCTATGCACTCCCACTTGGTGTCAT
CTTCGTATTCAAATCATCGTGTACCCCCCGCTACCGCTACTGCTGTTGCT
GTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGACACTGCTGCCTGTTG
CGTCGGCGGGCACACACACACACACATTGAAAACATCCTGCATCTCTGCT
TCGAGAAGTCTTTATTCGGTACCATATAAGGCCATCTCCACCACCACCCA
CGGCGTCAGCCCTAGCGTCTGCTGCTGCTTCACCACCTACGTTCAGCCAG
AGACTACGAGAGGAGCACAGACAAGGGTACAGGAGTGCAGCACAGCAAAT
AGCTAAATATCCAACACCCGAAGGGGGAGGTTGAGTGCCTGGGCAGCTGT
CTGTCGGTCTGTTTGTCCGAGTCACACGTCGATACGGCAACAACTCCGAT
CGCAACAACAGCAGCAGCATCAGCAGAGTCACTTTTTAGCAGCGGCCCGT
TCCTGCTAGCGAAAGTTGGCGATGGCGGCTAGCAACCTGCCCCGACGGAT
TGTCAAGGAAACCCAGAGGCTTCTCGCCGAACCAGGTGTGTCTGTCTGTC
TGTCTGTCTGCCTGCCTGCCTGTCTGTCTTGGCTGTCTGTGTCTACTCTC
ACGTCTGTGCGGCGTACATGATGCGTCTATTCTGTCTGGTTGGCCGTGCC
GGTGTCTTGGGGTCTAGGCCTGGGTCTGGGTGTTTGTGCATCTTTTTTTC
TATATTTTTCTGTATCTTTCGTCTGTCCCCACGCCTCGCTGGTCAATTTT
TTTCTTTTTTTATGGAGCGCATGCGCATGTTCAAATTTCTTCACACTCGT
CTCGTATCGTCAGCAGCAGCACGGCACGCTGGTCGCCCGCCCCTGTTTCC
TCTCTCCTCGCGTATTCTTACGATACATATACACCTAACTCTTCAACTCG
CTGTACAAACACAAGTTCGCTGGTTCCAGGCGGATCAATTGGCTCGCGAT
CTTTTTGAACCGCACATCTGGCCACTCCTGTAGGTCCAGTTCGAAAAGGC
CTCAAATTTCGACAGGTTCAAAATGCTCACTACCCCTACATGCCGTGTAC
GTTATGAAACGTCGTGCGCGTGTGTGCGGCAATTACAGTGTACATAGCGT
GGTCGTTGATTTCTCTCAACTGAGTGGCAGATATGCGGTCAAAGATCCCT
GCATCAGTCGGCACAGGTCGAGGCAATCAGAGTGTGTACAGCATTGTCCC
CGGTGGCCGTCCGCCCCGCTGGAAGCGGCGCTGTCGTACACCGCCGCGCA
CATGGGATTGCGGACTGCTGTGCACGAGGCCTTCATTTCACAAAATTAGT
ACTTCGTAGGAAATAAGTGAAAAGATGCTTGCTCCGTCTGCTTCACACAA
AATAAATAAAAATAAAAAACGAGAAGAATATTAAATTTCGATCACCCTCC
TTCTCCGCTGTTGGACTTGGCACATGTCGTCTGTCTTCGGCGGATTTCAC
CTTGACCTGCACGTTTGGGGCCTTTATTTACCCGTTTTTTTTTACACCCG
CCGCCGGCTCTGCTCGTGTGCGTTTTTGAAAAACAAAAACGACGCAACAA
ACCAACAGTACCTGGCATAAGCGCCACTCCGTACGAGGATAACCTGCGCT
ACTTCAACGTGGTCATCACTGGACCAGAGCAATCGCCGTACGAAAGTGAG
GAGAGGAGGGGTTTCGTTCCGAGCCTGCGTCAGTAGATAGTCGGGGAGAG
AGCCGGGGGGTGGGGAAGCTGCGGGACCCAATTGGTCCTTGCCTTGAATG
TCTTTGATCGTTGACGACGCATCCAATGATGTCGAGATGGACCAACACTC
AAGGCGCGCTGTAGCGTTTTCGCCAGTCTTGTGAAACACAGAAACCTCTT
GCTGATACTAGAGACTTCTTTTGTTGGTGAAGTGGGGGGGGGGGTTAGCT
CCTGTTGGTACGTATTCAGCCGTGTCCGACACGATGCTCAGCATCGCAAA
TCATGAGGGGAGCAGAGGCAGCGGTTTCCTTTTTTGTTCTTCTCAAAAGC
CACTCAACAAGGGAGATGGAGCGACGGGCTCTCTTACCTCCCCTTCCTCT
CCCAGCGCTCACCTAGGTACACATCGCACTTGTCGAGAACCTCTCAACTC
TTCTGAAAATCTCCCACGAGCCGGACTGAAGGGAcCCCCCCCCCCTTCCT
TCCCGTACCTTTGAAACTGGCACCGCCCGTCACCGGCTCTTCGTGTCTTT
GCGCGGGGAATCACCTCGCAGATGGATCGTTCAAGCTGGAGCTGTTCCTG
CCATCTGACTACCCAATGGCACCCCCGAAGGTGTCAAAACAAATTTATCA
AGCAAGACCAGGGTGACATGCGATGAGGCAGACAAGAAGTTTTCTCTACT
CTCTTTCTTGCGGTTTGCTCTGACCGTTACCGTTACCGTTACCGGTCAGA
GGTTGAATTTTACCTCGTCGCTTGGCTGCTGTAGCGTTTCCGTCTCAGAT
TCCCCCCCGTCCCTTTTTTGCTGCTTGCTGCTTGCTGCTTGCTTCTGCTT
TTGCCGCGGGTTCAGTCGTTCCTGTTCATCTTTATTCGTGGTTCATGTGT
GTTCAAGCGATAGGCATACAAACAGTAGCCGACATACCAGCGAATCGTTA
CTCCCCGACGTGATGACATCCAAAAAACACATCATAGCATGAGCACATGC
AACCGCTGGTGTTTGCTGAAGTATTTATTTCCTCGCCTGCACCCATGTAT
GCTCGCACGTGCATAAATACTGGTTGCAGGCACGAACATCAATTCCATGC
TCGACGCCACACCGGACCCCGGGGTCGCTTTTTGTCCCATCGCTCTACCG
CATCTCCTGGCAGTTCCTGGCTTTCATGCTTCGAAGTACTTTTGTATGAA
GCGCTCGATAAAGTGTGTGTATCTGTGTGCATCCCCCACACTATCTTCGG
TACAATCACCCCACATTTCCTTGTTCTCCTGATTGACAAAACAAATCAAG
CCTATCATATGTACTATAATCATGAAAATTTGACCGTTCATTATTTGCGC
GTTCGGGGACCGCACGGCCCTGCCGCCGTTGATGGTCAACACAGGTGCGC
TTCCTGACGAAAATCTACCACCCGAACATCGACAAGCTGGGCCGCATCTG
TCTCGATATCCTCAAGGACAAGTGGTCTCCCGCCCTCCAGATCAGGACAG
TGCTTCTCAGCATCCAGGCAAGTACTTCGTTTATACAATGTACCGTGGTA
TTTCGTCATATGTCGCTACATTTGTGTCGTACTTCGAGTAAAAATCGGGA
GGTTCCTGAGTATCAACCCCAGGAACGGACGTCTTTTTTTTTAATATATG
TATCTCGGATTATTTTTTTGGAAAAAACTTGCATGTATATTCGAATTTCG
CGACCCCCCTAGTAGTTCACGAGGCTTGCGGGAGCTAGCGAAGAGAGACA
AGTGACGTTCGATGGTACAGCTTCCTTGACATTTTTTATACCATCTCTGG
TTCCAGGATTTCTGCGAAAGTCTTGTCCGTCGTTGAGATCCAAGTATTTG
TGCTGTCCGTCGTCCGTCCAAACGCCTGTTTCTGTTTTGTCGTCGTCGTG
CGCCCTGTTTTTTTTTTTTTGTTGTTTGTCTTTTTGTTATTTTGTTATTT
TGTTATTTATTTGGGGGAAATTTCGGATTTTCAAAAATTCCCTATTTTCG
TGATTTATTTGGATACTGGAAATTCGCGTGGGTGGGTGGGGGGGGGGGGG
GGGTTGTTCCTGCAGGCACTGCTCTCGGCCCCCAATCCGGACGACCCGCT
CGCGAACGACGTCGCAGAAATGTGGAAAACAAACGAGGCTCAGGCGCTGC
GGACAGGTGTGCGTTGTTCTTCATGTGTGGAATGTAAAACATGTGCATGT
ATCATATCATAGGCTGGATGTGTGTGTGCGTGTGTGCGCGGGCTGCATGG
TGTGTTGCTTGTGTGGATGGGCGCGCCCGCAGGCCGCCTCCTACGCACGA
CGCGGTAGTGTGCGCGTGACATCTCATCTTGCGCACGTAAGGTCACCGAA
AAGACCCCCGCCGGCGGTCACATCGCCCAACCAGCGTCACACATGTGTAT
GATAGAGGGAACAGCAGTCATTGGGTGGATCAAAGCACGTGGAAGTTTGA
AAACCAGTCACAGCTCTCAGGAGTATGCTCTGGTCGTGGTGCGCTCGAAA
CAAGCACCTCGTGTGGGGTGAGCCAAGCGCGCCCGTTGTCCGAGGTATAC
GTGTACTGCCGCAAGCGTGAAGCCCAAGTTAGATTGACGCTTTGCGACTG
GCGTGTTACACCAGAGAACGCCAACACCCTTGTACATTAGTTTAAGTTTT
TCGACCGTCCATTCTGTGCGTCCGTACACGAGTTACCTGCAGGCGTAACG
GACAGCAGTAGCGCCTTTTTCGTGGCGATCAGGTAGAAACAAAATACTTG
CTCTCTGTGTGACCTTCCTGTCTGTCGTGACTACGACTGACGCGCACGCG
TACACCGAAAAGTGTAGAATGGTGTCCTGAGTGGATGAGAGACAACACAC
ACACAAATAACGCATACCAGCACCCACATTCGGTTGTATCGACGTATCAT
ATGATGCATGCAGAGTGTTGAGTTCCCCTGGGTCTCAGTTTGTCCCTTTC
ATGCCTGTCTGGAGTAACTCCTTTCCGAGTCTACGCAGCACGAACCTCCT
CCCCCCCCCCCCCATCTCCTTCAGCCACCCACCCTTGCTCTCGTAGTAAT
GTGTCGGAATGTTGCCCCCCCCACCGAAGCGTTTCTTTGGGATGCCGCGC
GCGTTTTTCGTGCCTCCCGTCCAACTCACCAAACAAGCACCTCGAGACGC
TTATGATAGCGCTCAGCGCGTACCAGGGACCGACCTGCCCGGCGAACGCG
CGACGCCCTCCGCCCCCGGCGTAAAGTAGTGGCAGTACTCGAAGGGGTTC
GAAGTTCTCTCGCATTACAACTGTATCGTATAGTTGTACAGAGTCCAATA
GGGTTAAGCGCAAGCCTCTTACACGTACTTTGGCCGAGCTTTTATCAGTC
AGCCTGCTACAGGCTAAAATGATGCTATATCTCCTACACGAATAGCTTCG
ATACAACAGAAAACAGTACGAGTACGTGTTATATTATATATATCCGTGCC
ACGATTGTGATCTTCCTGAAAAAAAGTAGTGTTCCAACCATTCTGCAAAT
TTTTGTCAAAAAAAAAAAAGAGCCCAGAAGTAAAAAAATCGTCAAAATCA
CTTGATTTTAGACGTAACCTTGGCCGCCACCATGACTTGACTCTTCACAC
GTCGAGCACCCCTGTATATAGGTATATAGGTAGTACTCCGAAGTACGTGA
GGAGCTGCGAACTCCAAATCCCTTCGGATTCACAAAAGGCGGTCAAAAAT
CATGAAATCTCATACTTCGAAGTATATTTCACGTTATTCATCTCTTGAGA
GCGCGGGTGCTGCCGTGCGTAAAAAAGTGAGTTGGCAGCCCCCTGTCTTG
GGACTCCGAAGCACAAGAGGCTGACAACAACACTCCATACCCCAATACCC
CACCTACCGCCGAGGAGGATATCCCCCCGAAAGTTGGCCGTTTTGCCCCA
AAACCATCGAAATGCATTCTTCTGCCTGGCGGGCTAAAAAATGAAAACAA
AAAAAATGGAGACTTTTGTCTCCTTTTTTTTTTTTTTACAAACAACAGGA
CGCAGCGCAGCGTAAACGCTCTAGCGTGACATGAGGCCACTTCACGCGAC
GCCTGCTGAAAAATGTCAAGCACACAGCAAGCATCCTCGTTTGTTGCATT
CCCCAACGATGTACGTACGCGTCGGCGGAAGGGAGAGGGTGGGGTGCAAA
AGGCTTGAAATCAGGCAACCTCTTAGTCCGTTTTCGTCATTAGTTTTTTT
CTGTTGTGGTTTCAGCCATTGTTTCAGCTGTTGCTATACAAGAGAGACAC
ATATGTGCACACCGCCATTCCGCCAGCACGCACGGACCAAGCCTTGAGCC
AGTTGTGCCCACGCTCTTGATGTTGCGATCAGTCACTTCGGCCAAGAAGC
AGACGGTTAAGCAAGTCGTAAATGCATGCAGCAATATAGTACAAATCGTG
GTCCAAAGTACCCCAAAAGCCGAAAGCGACGAAAAAAGCTCGTTAAAACA
CAGCTTCCCACACGCATATCGCTGTTTGTTTGGTCCTTGAGCGCTCGCTT
TACGAATCCCACATCCAATAGCGCAAGGGACAGCAGCTCAGGACCTCTCT
AGTTCACCGACGGCGGCGAACCTGGCGCTTCCTCTTCCTCATGTATCCCA
GCAGGAGCATGTTTTCCGTCACTGAAGAGTTGAAAAGAGTTTGGTTTCAT
GCAGCGGTTTAGTTTTCTCAGACTCAGAAAATTCCAACAGTACAGCAGTC
GTATCCAATACCGCCCCTATGGCGCTGGTGAAACCAAGCACCGATGCAAC
TGACACTCGTCGGACATGCTCGGCACGCCCTACTGGCGGTGCGCTCGTCG
TATGTTTTGGATGCGGCACAAGAAGGCTTCAAGCGCCAGCCTTGTACTGT
GTGTGTGCGTGACTGGCCGGGTACACACTCGCTCAGACAATTGTATTTGG
GAACTCCTGAGACATGACAGGACCGATTGTCGAGATTCTGTTGCGCGATA
GACGTTCCATCTAGAACGATTCCGGACGCCTGTCGAAAAAATTATTGCAC
AAAAAATTACGATTGACCACCTACTGTTCCCTGTTACAACCTGTCACAAA
GCAACTTTTATCTGTATATCCGTACTGCTGTGCTGCACTGCCGTGTACGG
TTGTGCATGCCACTGATCCCCCCGCCCCCGCCCGTTTCTGCGTTGCCGTC
AACCCCAAACGCCGCCCTCCGTTTGTCAGCGCGGGAATGGACCCAGCGGT
TGGCGAGGGCCACCGCGTGATGACCGTTCGAAAAAACGTTCGAGAGAACG
TTCTGGAGATCGCCCTGGCCCATGTTTGACGATGGTGATGGCAAGCAAGG
CGTGGGGGGGGGCAAGACGCGGAAGGCGAGCAAAGCAAGACCCGCCATGG
ACGGTGATAGACGGAAGGATTAGTCGATTTCGTTTTACGTCGCGTTTGCA
GCGCGCGCATGCAACACCCGGACGGCTGCGGCGTTTTTTTGGAGGTGGAT
GGAAATGGAAGAGGAGAGCGGTGGGCGGCACCGGGGAGGGGGCAGAGTGG
GGGTGGGCGGTGGTCATGAAAGCTTTTTGGTCGTATCGTATGAACTGGTA
TGGTCAGAGTTCTTAGGGGACCACGATATTTCATCCTCCTGTAATTGATG
ATTGTCTTTCCAGAGAGATGAGGTGGGGGTGTGACGCCGCTCGCACGGTA
ACGACGATAACGACGACGACGAAGAAGACGAAAAATGTGATGAGCGTTCC
TGTTTTTCGTTCTTTTTTTTACCGTTGGGAAAAAAAAACGATAAAAACTT
GAAACCTTTAGGATGACGTCCTCTGTGTTTTTGCGCCCGTGCGCCTTCGA
CGATCGATGATTTGTTTTTCCGAACGAATTTTGTTTTTTGTGTGTTTTTT
GTGTTTTTGTTTTTTTTGCCCTCGCGTACTGATGTCATCTGCTCACATGG
GTATATTTTTTTCGTCTTCATCGACCGTAATCTTGTTGGGAGATGGAAGC
TGTCAAGGCAAAGCACAACCAAAGGGGAGGAAAGGCGTCAGCGATTTGGT
TTTGCTGATTATCGTGTGACATATACACTACGTTACAAATGGTGTGTCTT
GTGGTGAGTGCAGTGTGAGAAAGGACGATTGTTTTTCGGAGATCCGCTGG
CAGGGTCGTTGGTTCAATACAGCGCACGGGGCGGGGTTATGTGGGAGTGG
CGATACTCGTTTGATCGCCACAGCAAGTGTGGTTTTATTCCGGCTCGCCT
TGTTTCTCGTAAACTGCTGAAGTATTGTTGATTGGTTTCAGGTGTGTCTT
AAAAAAACTCTGTTTTGAACGCCCCTATAAATTGCGACATGCCGAGCG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig18:813111..821858+ >mRNA_P-littoralis_Contig18.189.2 ID=mRNA_P-littoralis_Contig18.189.2|Name=mRNA_P-littoralis_Contig18.189.2|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig18:813111..821858+ (Pylaiella littoralis U1_48) ATGGCGGCTAGCAACCTGCCCCGACGGATTGTCAAGGAAACCCAGAGGCT TCTCGCCGAACCAGTACCTGGCATAAGCGCCACTCCGTACGAGGATAACC TGCGCTACTTCAACGTGGTCATCACTGGACCAGAGCAATCGCCGTACGAA AATGGATCGTTCAAGCTGGAGCTGTTCCTGCCATCTGACTACCCAATGGC ACCCCCGAAGGTGCGCTTCCTGACGAAAATCTACCACCCGAACATCGACA AGCTGGGCCGCATCTGTCTCGATATCCTCAAGGACAAGTGGTCTCCCGCC CTCCAGATCAGGACAGTGCTTCTCAGCATCCAGGCAAGTACTTCGTTTAT ACAATGTACCGCACTGCTCTCGGCCCCCAATCCGGACGACCCGCTCGCGA ACGACGTCGCAGAAATGTGGAAAACAAACGAGGCTCAGGCGCTGCGGACA GCGCGGGAATGGACCCAGCGGTTGGCGAGGGCCACCGCGTGA back to top
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