mRNA_P-littoralis_Contig18.123.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE) HSP 1 Score: 226 bits (577), Expect = 9.280e-70 Identity = 124/254 (48.82%), Postives = 174/254 (68.50%), Query Frame = 2
Query: 89 PTAQNRVNLS*ADKTE--TQVSTDGGWRVTGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
P ++N+++ + + + T+ +GG WP +EA+G+++W+ +SR +++ R VARHAH P +RH A+ +I+ YL GT+DL + ++RG L+VY D++YAD D RRSVSG+A T+G +S S TQ IV+LS TEAEY+A DGVKEALF +AV SF+VP S + I+VL DN+GAI L NPLSS RTKHIDVRFHF+R L SG I+ ++VPT E+ AD+LTKAL ++ + HR NL
Sbjct: 10 PGSKNKIDPAASTRARGPTREDEEGG------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNL 256
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 231 bits (590), Expect = 3.070e-68 Identity = 122/227 (53.74%), Postives = 167/227 (73.57%), Query Frame = 2
Query: 170 TGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNLHG 847
+G WP +EA+G+++W+ +SR +I+ R VARHAH P ERH +A+++I+ YL T+DL + +ERG L+VY D++YAD A++RRSVSG+A T+G IS S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P S + I+VL DN+GA+ L NPLSSAR+KHIDVR+HF+R L SG I+ ++V T E+ AD+LTKAL S+ + HR LMN G
Sbjct: 284 SGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFAG 509
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 231 bits (589), Expect = 1.110e-67 Identity = 122/225 (54.22%), Postives = 167/225 (74.22%), Query Frame = 2
Query: 170 TGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
+G WP +EA+G+++W+ +SR +I+ R VARHAH P ERH +A+++I+ YL T+DL + +ERG L+VY D++YAD A++RRSVSG+A T+G IS S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P S + I+VL DN+GA+ L NPLSSAR+KHIDVR+HF+R L SG I+ ++V T E+ AD+LTKAL S+ + HR LMNL
Sbjct: 371 SGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 594
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE) HSP 1 Score: 222 bits (565), Expect = 2.260e-66 Identity = 117/220 (53.18%), Postives = 162/220 (73.64%), Query Frame = 2
Query: 185 PFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
P +EA+G+++W+ ++R +I R VARHAH P ERH +A+++I+ YL T+DL + ++RG L VY D++YAD A++RRSVSG+A T+G IS S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P S + I+VL DN+GA+ L NPLSSAR+KHIDVR+HF+R L SG+I+ ++V T E+ AD+LTKA S+ + HR LMNL
Sbjct: 161 PVREAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNL 379
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE) HSP 1 Score: 221 bits (564), Expect = 3.660e-66 Identity = 121/241 (50.21%), Postives = 166/241 (68.88%), Query Frame = 2
Query: 122 ADKTETQVSTDGGWRVTGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
A+ E +V G R G +EA+G++LW+ +SR +++ R VARHAH P +RH A+ +I+ YL GT+DL + ++RG L+VY D++YAD D +RSV+G+A T+G +S S TQ I++LS+TEAEY+A G+GVKEALF +AV SF+ P S + IKVL DN+GAI L NPLSS RTKHIDVR+HF+ L SG I+ ++VPT E+ AD+LTKAL + + HR LMNL
Sbjct: 150 AEGLEARVDRSGMTRREG-----REAIGSMLWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-KRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNL 384
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5L786_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L786_9PHAE) HSP 1 Score: 225 bits (574), Expect = 1.060e-65 Identity = 121/224 (54.02%), Postives = 161/224 (71.88%), Query Frame = 2
Query: 173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
G WP +EA+G+++W+ +SR +++ R VARHAH P +RH A+ +I+ YL GT+DL + ++RG L+VY D++YAD D RRSVSG+A T+G +S S TQ IV+LS+T AEYVA G+GVKEALF +AV SF+ P S + I+VL D+ GAI L NPLSS RTKHIDVRFHF+R L SG I+ ++VPT ER AD+LTKAL ++ + HR LMNL
Sbjct: 347 GGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSRTQSIVSLSSTGAEYVAAGEGVKEALFVRAVLSFVAPETSGSGIQVLEDSLGAIALLQNPLSSGRTKHIDVRFHFIRGLFGSGGISVKFVPTTERHADLLTKALSRASLQYHRRKLMNL 569
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 232 bits (592), Expect = 2.910e-65 Identity = 120/226 (53.10%), Postives = 162/226 (71.68%), Query Frame = 2
Query: 173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNLHG 847
G+ P ++A+G L+W ++R +IA V R+AH PT R +A++QI+ YL T DL + + RG DL VY D++YAD+ RRSV+G+AVT+G +S S TQ+IV+LST+EAEY+A G+GVKEALF +AV SF+ P S IKVL DN+GAI+L NP SSAR+KHIDVRFHF+REL SG+I+ EY+PT E+ AD+LTKAL + + HR+ LMN+ G
Sbjct: 1021 GVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIPG 1246
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 232 bits (592), Expect = 3.610e-65 Identity = 120/226 (53.10%), Postives = 162/226 (71.68%), Query Frame = 2
Query: 173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNLHG 847
G+ P ++A+G L+W ++R +IA V R+AH PT R +A++QI+ YL T DL + + RG DL VY D++YAD+ RRSV+G+AVT+G +S S TQ+IV+LST+EAEY+A G+GVKEALF +AV SF+ P S IKVL DN+GAI+L NP SSAR+KHIDVRFHF+REL SG+I+ EY+PT E+ AD+LTKAL + + HR+ LMN+ G
Sbjct: 1574 GVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIPG 1799
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE) HSP 1 Score: 229 bits (584), Expect = 3.620e-65 Identity = 120/224 (53.57%), Postives = 162/224 (72.32%), Query Frame = 2
Query: 173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
G WP +EA+G+++W+ +SR +++ R VARHAH P +RH A+ +I+ YL GT+DL + ++RG L+VY D++YAD D RRSVSG+A T+G +S S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P S + I+VL DN+GAI L NPLSS RTKHIDVR+HF+R L SG I+ ++VPT E+ AD+LTKAL + + HR LMNL
Sbjct: 630 GGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNL 852
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE) HSP 1 Score: 214 bits (545), Expect = 6.930e-65 Identity = 116/229 (50.66%), Postives = 159/229 (69.43%), Query Frame = 2
Query: 173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPL-----SSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
G WP +EA+G+++W+ +SR +++ R VARHAH P +RH A+ +I+ YL GT+DL + ++RG L+VY D++YAD D RRSVSG+A T G +S S Q IV+LS+TEAE++A G+GVKEALF +AV SF+ P + I+VL DN+G + L NPL SS RTKHIDVRFHF+R L SG IT ++VPT E+ AD+LT+AL ++ + HR LMNL
Sbjct: 30 GGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYHRRKLMNL 257 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig18.123.3 >prot_P-littoralis_Contig18.123.3 ID=prot_P-littoralis_Contig18.123.3|Name=mRNA_P-littoralis_Contig18.123.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp MSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVback to top mRNA from alignment at P-littoralis_Contig18:586256..592067- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig18.123.3 ID=mRNA_P-littoralis_Contig18.123.3|Name=mRNA_P-littoralis_Contig18.123.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5812bp|location=Sequence derived from alignment at P-littoralis_Contig18:586256..592067- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig18:586256..592067- >mRNA_P-littoralis_Contig18.123.3 ID=mRNA_P-littoralis_Contig18.123.3|Name=mRNA_P-littoralis_Contig18.123.3|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig18:586256..592067- (Pylaiella littoralis U1_48)back to top |