mRNA_P-littoralis_Contig18.123.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.123.3
Unique NamemRNA_P-littoralis_Contig18.123.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 9.280e-70
Identity = 124/254 (48.82%), Postives = 174/254 (68.50%), Query Frame = 2
Query:   89 PTAQNRVNLS*ADKTE--TQVSTDGGWRVTGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
            P ++N+++ + + +    T+   +GG       WP +EA+G+++W+  +SR +++   R VARHAH P +RH  A+ +I+ YL GT+DL + ++RG    L+VY D++YAD  D RRSVSG+A T+G   +S  S TQ IV+LS TEAEY+A  DGVKEALF +AV SF+VP  S + I+VL DN+GAI L  NPLSS RTKHIDVRFHF+R L  SG I+ ++VPT E+ AD+LTKAL  ++ + HR    NL
Sbjct:   10 PGSKNKIDPAASTRARGPTREDEEGG------EWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNL 256          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 3.070e-68
Identity = 122/227 (53.74%), Postives = 167/227 (73.57%), Query Frame = 2
Query:  170 TGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNLHG 847
            +G  WP +EA+G+++W+  +SR +I+   R VARHAH P ERH +A+++I+ YL  T+DL + +ERG    L+VY D++YAD A++RRSVSG+A T+G   IS  S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P  S + I+VL DN+GA+ L  NPLSSAR+KHIDVR+HF+R L  SG I+ ++V T E+ AD+LTKAL  S+ + HR  LMN  G
Sbjct:  284 SGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNFAG 509          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 1.110e-67
Identity = 122/225 (54.22%), Postives = 167/225 (74.22%), Query Frame = 2
Query:  170 TGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
            +G  WP +EA+G+++W+  +SR +I+   R VARHAH P ERH +A+++I+ YL  T+DL + +ERG    L+VY D++YAD A++RRSVSG+A T+G   IS  S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P  S + I+VL DN+GA+ L  NPLSSAR+KHIDVR+HF+R L  SG I+ ++V T E+ AD+LTKAL  S+ + HR  LMNL
Sbjct:  371 SGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNL 594          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 2.260e-66
Identity = 117/220 (53.18%), Postives = 162/220 (73.64%), Query Frame = 2
Query:  185 PFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
            P +EA+G+++W+  ++R +I    R VARHAH P ERH +A+++I+ YL  T+DL + ++RG    L VY D++YAD A++RRSVSG+A T+G   IS  S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P  S + I+VL DN+GA+ L  NPLSSAR+KHIDVR+HF+R L  SG+I+ ++V T E+ AD+LTKA   S+ + HR  LMNL
Sbjct:  161 PVREAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNL 379          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 3.660e-66
Identity = 121/241 (50.21%), Postives = 166/241 (68.88%), Query Frame = 2
Query:  122 ADKTETQVSTDGGWRVTGIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
            A+  E +V   G  R  G     +EA+G++LW+  +SR +++   R VARHAH P +RH  A+ +I+ YL GT+DL + ++RG    L+VY D++YAD  D +RSV+G+A T+G   +S  S TQ I++LS+TEAEY+A G+GVKEALF +AV SF+ P  S + IKVL DN+GAI L  NPLSS RTKHIDVR+HF+  L  SG I+ ++VPT E+ AD+LTKAL  +  + HR  LMNL
Sbjct:  150 AEGLEARVDRSGMTRREG-----REAIGSMLWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-KRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNL 384          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5L786_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L786_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 1.060e-65
Identity = 121/224 (54.02%), Postives = 161/224 (71.88%), Query Frame = 2
Query:  173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
            G  WP +EA+G+++W+  +SR +++   R VARHAH P +RH  A+ +I+ YL GT+DL + ++RG    L+VY D++YAD  D RRSVSG+A T+G   +S  S TQ IV+LS+T AEYVA G+GVKEALF +AV SF+ P  S + I+VL D+ GAI L  NPLSS RTKHIDVRFHF+R L  SG I+ ++VPT ER AD+LTKAL  ++ + HR  LMNL
Sbjct:  347 GGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSRTQSIVSLSSTGAEYVAAGEGVKEALFVRAVLSFVAPETSGSGIQVLEDSLGAIALLQNPLSSGRTKHIDVRFHFIRGLFGSGGISVKFVPTTERHADLLTKALSRASLQYHRRKLMNL 569          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.910e-65
Identity = 120/226 (53.10%), Postives = 162/226 (71.68%), Query Frame = 2
Query:  173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNLHG 847
            G+  P ++A+G L+W   ++R +IA     V R+AH PT R  +A++QI+ YL  T DL + + RG   DL VY D++YAD+   RRSV+G+AVT+G   +S  S TQ+IV+LST+EAEY+A G+GVKEALF +AV SF+ P  S   IKVL DN+GAI+L  NP SSAR+KHIDVRFHF+REL  SG+I+ EY+PT E+ AD+LTKAL  +  + HR+ LMN+ G
Sbjct: 1021 GVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIPG 1246          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 3.610e-65
Identity = 120/226 (53.10%), Postives = 162/226 (71.68%), Query Frame = 2
Query:  173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNLHG 847
            G+  P ++A+G L+W   ++R +IA     V R+AH PT R  +A++QI+ YL  T DL + + RG   DL VY D++YAD+   RRSV+G+AVT+G   +S  S TQ+IV+LST+EAEY+A G+GVKEALF +AV SF+ P  S   IKVL DN+GAI+L  NP SSAR+KHIDVRFHF+REL  SG+I+ EY+PT E+ AD+LTKAL  +  + HR+ LMN+ G
Sbjct: 1574 GVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIPG 1799          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KGN1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN1_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 3.620e-65
Identity = 120/224 (53.57%), Postives = 162/224 (72.32%), Query Frame = 2
Query:  173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
            G  WP +EA+G+++W+  +SR +++   R VARHAH P +RH  A+ +I+ YL GT+DL + ++RG    L+VY D++YAD  D RRSVSG+A T+G   +S  S TQ IV+LS+TEAEY+A G+GVKEALF +AV SF+ P  S + I+VL DN+GAI L  NPLSS RTKHIDVR+HF+R L  SG I+ ++VPT E+ AD+LTKAL   + + HR  LMNL
Sbjct:  630 GGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNL 852          
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Match: A0A6H5KCA5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA5_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 6.930e-65
Identity = 116/229 (50.66%), Postives = 159/229 (69.43%), Query Frame = 2
Query:  173 GIPWPFKEAVGALLWLVVWSRLEIANPTRVVARHAHDPTERHKQAVIQIIKYLLGTKDLSLVFERGVDFDLSVYTDSNYADKADERRSVSGVAVTLGNATISWMSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLVDNEGAINLASNPL-----SSARTKHIDVRFHFVRELVSSGKITAEYVPTVER-ADILTKALVGSAFKAHRDFLMNL 841
            G  WP +EA+G+++W+  +SR +++   R VARHAH P +RH  A+ +I+ YL GT+DL + ++RG    L+VY D++YAD  D RRSVSG+A T G   +S  S  Q IV+LS+TEAE++A G+GVKEALF +AV SF+ P    + I+VL DN+G + L  NPL     SS RTKHIDVRFHF+R L  SG IT ++VPT E+ AD+LT+AL  ++ + HR  LMNL
Sbjct:   30 GGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTGGGTVVSHGSKKQSIVSLSSTEAEHIAAGEGVKEALFMRAVLSFVAPETRGSSIQVLEDNQGGMALVQNPLVQNPLSSGRTKHIDVRFHFIRGLFRSGDITVKFVPTTEQHADLLTQALSRASLQYHRRKLMNL 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.123.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPN5_9PHAE9.280e-7048.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCG0_9PHAE3.070e-6853.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE1.110e-6754.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L589_9PHAE2.260e-6653.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGI0_9PHAE3.660e-6650.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L786_9PHAE1.060e-6554.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE2.910e-6553.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE3.610e-6553.10Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGN1_9PHAE3.620e-6553.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCA5_9PHAE6.930e-6550.66Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:586256..592067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo144685
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size961
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.29e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size369
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789865.6337378-UTR-P-littoralis_Contig18:586255..5863661680789865.6337378-UTR-P-littoralis_Contig18:586255..586366Pylaiella littoralis U1_48UTRP-littoralis_Contig18 586256..586366 -
1680789865.6549942-UTR-P-littoralis_Contig18:586735..5870651680789865.6549942-UTR-P-littoralis_Contig18:586735..587065Pylaiella littoralis U1_48UTRP-littoralis_Contig18 586736..587065 -
1680789865.6672072-UTR-P-littoralis_Contig18:591916..5920671680789865.6672072-UTR-P-littoralis_Contig18:591916..592067Pylaiella littoralis U1_48UTRP-littoralis_Contig18 591917..592067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789865.6451004-CDS-P-littoralis_Contig18:586366..5867351680789865.6451004-CDS-P-littoralis_Contig18:586366..586735Pylaiella littoralis U1_48CDSP-littoralis_Contig18 586367..586735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.123.3prot_P-littoralis_Contig18.123.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 586367..586735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.123.3

>prot_P-littoralis_Contig18.123.3 ID=prot_P-littoralis_Contig18.123.3|Name=mRNA_P-littoralis_Contig18.123.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MSSTQKIVTLSTTEAEYVALGDGVKEALFAKAVASFLVPALSQNIIKVLV
DNEGAINLASNPLSSARTKHIDVRFHFVRELVSSGKITAEYVPTVERADI
LTKALVGSAFKAHRDFLMNLHG*
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mRNA from alignment at P-littoralis_Contig18:586256..592067-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.123.3 ID=mRNA_P-littoralis_Contig18.123.3|Name=mRNA_P-littoralis_Contig18.123.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5812bp|location=Sequence derived from alignment at P-littoralis_Contig18:586256..592067- (Pylaiella littoralis U1_48)
TTCAATTCAATTCGTATGGATGATCACCTGGGGAACGTCAAGTAATGTAA ACTATCTTCGTTGGGTTCATATCTTTACCTCCTGACCGCCGACAGCACAA AACAGGGTCAACCTATCGTGAGCGGACAAGACAGAGACGCAAGTCTCCAC GGTGAGTCCGCTGTGATACAAGCTCGAAGGTCTTCCGCACCTTCGATAAA ACTGGCTACTCCGATCTTGAAGAACCGGAACAAGTGGCTGATTTTCGAAT CACGTGTTGAAGTGTATGCCAAGTATCATGGATTCGATGGTGTACTGACC ACTGAGGGTGGGGCCTACGTATTTTTTTTGGACTCGAACATCGAACATCG AACAAGCGGATAGTTCGATGTTCGACTTTTTGGGTCCTTTGTAATTTCGG AAAAGGGGAGTAAAAAAATCCCACAGGCACACACACACACACGAAAGTGC TCCCCAATAGACCGGGCTGTCATATATATCGGTACGCAGCTGCTGCTGCT GCTGCTGCTGCTGCTGTTGCTACGGCTGCTGTGTGGTTGCGACAGGAAGC CACGCCCGTGTGATTGCGTCTCACCTGGCCCCGCTTGCGCACGCGGGGCC CTGAGATCAGTCGAAACCTCGCTGTCGCTCGGCATAGACACTTGTTTTGC GCCTATGCTCTGCGGTCGTCTCTCTCTCGGTCGCCCGGTCGCCCTCTCTC TCTTGTCCTGAGAGGGAGCGATAGACGCGGGTCTTCTTTTTTTGTTACCA ATTAATTTATTTCGTCAATAGCCCACGGGACTGTAGGTTCGATGTTAGGT TTTCGAGTTTTTGTGAAAGATGTTAGAGTTTTAGGCGGAATCGCCCCTGG AAGATCCAGCGTAGAAAAACTCGAACACCCTAACATCTATTGTTTTATTT TATTTCCATGGCCAATCACATGATTACGCCGCTTGTTCGATGTTCGATGT TCGAGTCCAAAAAAATTACGTAGGCCCCACCCTGACCCATATATCGACGT AGGTCGGAAGAGTAAGGAAGAAATCCTTAACGACAACGTCCCTGAAGTGG TCTATGACAGACATCTGAAGTGTTGGGTGTTTCTCTCACAGGCTTTCGAG ATACCTGTAGATGTGGGGAGGTTCCGGAGGAGTTCTTCCCCAGGTAGATT CTGGAGGGAGACAGTTGAGTACTACTGTCCCCAAACCACCGGAAACAAAA TCCAATTTCAGAAGGATTTTAATGCGTTCTCAATCCCGAAGGGAGCTGAT CCAATCGAGAAGTATTTCCAATTAGAAGACCACGTAGCACGAATGCGGCT GGCTGGCATGGTTGTTGATGACCAAACGATGCTGGGCACGTTCGTTACTG CTCTTCCGCCCAAGTACGAGTTGGAAATCAGAGAGCTATGCCGGCAAAAG GAATTCAATCCAGATCACGTCCAGGACACGGTGAAGGCAGCGTACGATCT GCTACGCGACAAGAAGACGAAGAAACCACCGGTAACCCATGCGCTCGTCG CGGACGGACGTGATGGAGCTGGTGGACGTGGGCACCCTGGCGGAAGGCGA GGGGGTCGTGGAGGCGGGCGAGGCAACAACAGGAAGAAGAAGTCCAGCGA CGGAAAAGACGGCGCTGAGGACGACAAGCCATCGGCCAAGGGGCCGATGT GTTACAACTGCCGTGGCATAGGCCATTTCGCCCGCGACTGCACTGTGAAG ATCTGCAAGCGATGCCAAGGAAGAGGGCACAACGAAGACAAGTGCGGGTC TCCGGCTGATATGCGGACAAACCTGGCGGTGGAGCTGCCGGACTGCGACT CTGGATCGGTGACTTCGAGCGTAGAGGCCGCAGGGTTCATAGCAAAGGAG CTGGACCTAGCCGGGTGTGTGCATCTACAAGGCAAGTGCGATGATGGTGG TTCAATCGGTGGTGTAGGGGATTTCGCACTGCAGGCTGTTGGTTTAGAAC CCTGGCACGTTGACTCCGGGGCTTCAGGCACAGTGACGCGTAGCTCCAGG ATGATGACCAACTTCCGACCGTGCAACAAGCTAGTTGCAGGTCCAGACAA TGTCACTCACCAGATTAAAGGCAGAGGTGACATAGCTGTCGACCTCAAGT CTGATGTGGGGTCAATGCTTATGGCTGTCAAAAACGCAGCCTACGTGCCC ACGTTTGCCTACAATCTGCTCTCCATGTCCCAGTGCGTGCGACGAGGATA CAAATTCGAAACCGATTACCCCGGTATGCTCGTCACTAAAAAGTCGACCG GAGAACAACTACTGATGCGCCCCGACAATGACTTATATGTCTCATACGGC CGCAAAGTTGATGGTGAGGTAGAAACAGCCTGCGCCGTGCTTACCCCGGG ACGTTTGTCCACCACCGATGTGGACATTAACCACTATCATCGCACCACCG CGCACACCCATCCCCGTTTGCTGAGGTAGTCCGCCAAGCAGCAAGGAGTG AAGATGAAACCTGGGGTGCAGCTACTTCCGTGTGTTGGATGCTCGGCGGC GAAGGGGTGCATTGCCGCTGTCCAGAAGACCACTCTAGTTCGCGCAGATA AGAACCACGGGAGGGTGTTTGTTGACACCTCGGGGAAGAAGCCCGTACCC TCAATAGGCGGAAATCAGTATGGTTTTATCTTTCGGGATGATGCGTCGCG GATGTCGCGCGAATACTTCATCAAAAAGAAGTCTGACGCCCCGGACGCGC TAGAGCAATATCTAGCGGACACCAAGGAAATGGGCGTTCCCGAAATCATC CGTTCTGACGGTGCGCCTGAGCTCATGTATGGCAGGTTCGCCAAAATCTG TCGACCCCACGGCATAAAACGCGAATTCACGTCCGCAAACACGCCGCAAC TTAACGGGGTAGCAGAGCGTGGCCTGACCTTGATCGAAAAACTAGCGAAG GCGTCTATCTTCCAGGCGCAAGTCTTTTCGCGGCATGGGATTGCCGGCGA TGGGCCCGTTCTGGGCCGAGGCTCACAACTTTGCTTGTGACAATCTGAAC CGTACGGCTACTACATCCAACAAGAACATGCTGTCCCCGTACGAGATGTG GCACGGCAAGAAGCCGCCGCCGACTTTGCTGCAGTGGTTTCAACCCTGCT TCCACAAAGTAAAGCGCAAGCACAAGACTGGTGCGCAAGCGGAGCCTGGT TTCTGCCTTGGCCCTGCACTCAATCATCCTCGTGACACCCATCGCATTCT TTCGAAAGCGACTAACAAGATTTCCCTCACACGGAATGTCACCTGACGCC ATGTTCCGACCCCTGCTACCCTGTCTGCTCAGCAGACACTTCCCTCGCTC GGTGAAGGCGGGAAAGATAACGACGAGAACGCCGTTGGGGGCAGGGAGGG CAAAGGGGGCGAGGAGGGCGAGGAGGACACGCCACTTCCAGGTGGTGGTG GGGATGATGCTACGGATAGCGACAGCGATGACGACCTTGAAGTGATGTAC GAGATCAACACATGTGGGGCTGCTCGAGATGTCGACGTCGCCGCCGGAAG GAAGCCGGAGACGATAGAATCGACTGAATCTTCTCGTGGAGGTTCGTTCG GGGGTGGAGGAAGTATCACACCTGACAGCCCTGGCGGCAGCAGCAGAGGA AGCAGCAGTGGTAGCGACAGCAGTAGCAGCAGCGGTGGCAGCAGTGGCAG CAATAGTTCCGATGCCGAAGAAGACGACGGCGCTGGTGCCGGCGACGCTG GTGCCGGCGACGCTGGTGCTGGCGAGAGTACCGTGGGAAGCGGTTATGCT GACCAACCTGCCGAGCTCCCCAAAGCTGAAGCGAACAGGCTGAAGAGTTG GGCGCGGCACGGCAGTGTTACCACCTCGTCGAGGCAGCGGCGAGCACCCA ACCGCTACATGGACGCCGCCAAGGAACAAGGTCTGGATGGTACTACGCGT GCTTTGCTCGTTCAGATACTGGACGGAGAAGCGGAAGCGGCGGACACGTC GGGACCACAGACTGTACTTGGGGGTTACGACTGTGACGAGTTAACGGGGG AGCTCGGCGCGAGTTCGACGGTTCCTGACGCACACGAGTCCGCGATCAAC GTCCTCTTGAGCAACATGGTCGGCCCGTCCGACGAGTTCACCCTGGTCGC CATATCCACTGGGAAGTATGAGTTGGAGTCTGATTTCGAAATGCCTTCTG GTCCAGTGTCTGAGGCGGAGATACCTCCTGTGTCGGTAGCGGGTGTTGAG AAGTCCCGCTGGCGTGATGCATGCAAGTGGGCCATGAACAAAGAACTCGT GGGATTAATCGGTTCGAAAACAGGGAAGGTATTACCAGGTTTACCCAAGG GGGTCAAGGCAGTTAACGCTCGGTGGGCACTCTCACTGAAGACTGACAAG GATGGGAGTATCGTTACCCCTAAGGCTAGACTGGTAGCCAAAGGATTCAT GCAACGTGAAGGTGTGAATTACAACCAGACTGCCGCGCCGCAGCGTCCGT CAAGATAGTGTTGGCAGTTGCCAACCAGATGGGATACAGGGTATACCATC TCGATGTCAAACAGGCATTCACCCAGGCGAAGTTAGACTGCAGGGTAGTC ATGAAGCTTCCAGGTGAATGTGGCGAGCTGTCTGGCAAATACGTGGACCT CGAGAAGGCGCTGTATGGCCTTAAACAGAGCGGTTTGCTGTGGAACGACT TGCTGGTGGTGAAGCTAGTCAAGAAACACGGCATGGAGCAGTGCAAGACC GACCCTTGCGTATTTCGGTTGATCGTGAAGGGCGTGGTGATGCTGATCCT GACGGTTCATGTGGATGACATGGCTGTCGCGGGTCCTCGGGTTGAGGTTG ACAAGCTTCTTGTGACGCTCAACGAGGATTTCACCACGGTGGACCTGGGA GAATTGTCGTTCTTCACGGGGTGCGCCGTCATTCAGGACATCGACAATGG TGTGACAAAAACTGAATCAGAAAACATTCATGGTAACGCTCGCGAGACGT TTTGATGTGACAACGACTGCCCGTTCCCCTTCTACCCCCGGTGCAAACTT AGGACGGAGGATGGAGGGTTACCGGCATTCCGTGGCCATTCAAGGAGGCC GTCGGTGCGCTGTTATGGCTGGTTGTCTGGTCCAGGCTGGAAATCGCCAA CCCGACGCGTGTCGTCGCGCGACACGCACACGACCCGACCGAGAGGCACA AGCAGGCGGTGATTCAGATCATCAAGTATCTGCTCGGCACGAAGGACCTG AGTCTTGTGTTTGAACGGGGGGTGGATTTCGATCTTTCTGTGTATACGGA TTCCAACTATGCCGACAAGGCTGACGAGAGGCGTTCTGTGTCGGGAGTAG CGGTAACTCTCGGTAACGCGACTATTAGTTGGATGAGCAGCACGCAGAAG ATTGTGACGCTGTCAACTACCGAGGCTGAATACGTAGCGCTCGGGGATGG AGTCAAGGAAGCTCTGTTTGCAAAGGCAGTAGCGTCGTTCCTTGTGCCTG CTCTATCACAGAACATCATCAAGGTACTCGTAGACAATGAGGGAGCTATC AACCTAGCGTCGAACCCACTAAGCTCTGCGAGAACCAAGCACATTGATGT GCGGTTCCATTTCGTTCGGGAACTGGTTTCGTCTGGTAAGATTACAGCCG AGTACGTTCCGACGGTAGAACGTGCAGATATCCTGACGAAGGCGCTTGTA GGCTCTGCTTTCAAAGCGCACAGAGACTTTCTGATGAATCTGCATGGATG ATTCTGCTTATTATGTGATTCTGTTCTGGATCATGAATAGTAGTTTCTGT TTTTGGTTTAGCGCTGGGTGATACTATGTACTAGTCGAGCGGAGAAAGAC AATACCATCTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:586256..592067-

>mRNA_P-littoralis_Contig18.123.3 ID=mRNA_P-littoralis_Contig18.123.3|Name=mRNA_P-littoralis_Contig18.123.3|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig18:586256..592067- (Pylaiella littoralis U1_48)
ATGAGCAGCACGCAGAAGATTGTGACGCTGTCAACTACCGAGGCTGAATA
CGTAGCGCTCGGGGATGGAGTCAAGGAAGCTCTGTTTGCAAAGGCAGTAG
CGTCGTTCCTTGTGCCTGCTCTATCACAGAACATCATCAAGGTACTCGTA
GACAATGAGGGAGCTATCAACCTAGCGTCGAACCCACTAAGCTCTGCGAG
AACCAAGCACATTGATGTGCGGTTCCATTTCGTTCGGGAACTGGTTTCGT
CTGGTAAGATTACAGCCGAGTACGTTCCGACGGTAGAACGTGCAGATATC
CTGACGAAGGCGCTTGTAGGCTCTGCTTTCAAAGCGCACAGAGACTTTCT
GATGAATCTGCATGGATGA
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