mRNA_P-littoralis_Contig18.43.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig18.43.1
Unique NamemRNA_P-littoralis_Contig18.43.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig18.43.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 7.380e-52
Identity = 97/114 (85.09%), Postives = 99/114 (86.84%), Query Frame = 1 
Query:    1 MSRHCVSVLLLVCNAQACLAFVPSWTATFRSSRLQPPASTPAAATFSLSQLSGAICPVFGPCGAYGAAHMFYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQ 342
            MSR+CVSVLLLV  AQACLAFVPSWTATFRSSR QPPASTPAAATFSLSQ SG ICPVFG C   GA   FYPV G+TSLSAMSEG EEEGGGDH AREAADGSPAADEIRAVQ
Sbjct:    1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGA-QFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQ 113
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BLAST of mRNA_P-littoralis_Contig18.43.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.460e-20
Identity = 51/70 (72.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  208 MFYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXEETAEVVKKID 417
            MFYPVRG+T LSAMSEGDEEEGGGDH AREAAD  PAADEIRAVQ              EETAEVVKKID
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKID 70
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BLAST of mRNA_P-littoralis_Contig18.43.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.760e-15
Identity = 46/63 (73.02%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:  229 ITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXEETAEVVKKID 417
            +TSLSAMSEGDEEEGGGDHDAREAAD  PAADEIRAVQ         X    +ETAEVVKKID
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKID 63
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BLAST of mRNA_P-littoralis_Contig18.43.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.070e-14
Identity = 61/70 (87.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:  229 ITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXX-------EETAEVVKKID 417
            +TS SAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXX       EETAEVVKKID
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKID 70
[Close]
BLAST of mRNA_P-littoralis_Contig18.43.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.100e-14
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:  208 MFYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQ 342
            M YPVRGITSLSA+SEG+EE+GGGDHD REAA GSPAADEIRAVQ
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQ 45
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig18.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI7.380e-5285.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI2.460e-2072.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI5.760e-1573.02Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI1.070e-1487.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI1.100e-1486.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig18contigP-littoralis_Contig18:212195..213003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size656
Hectar predicted targeting categorychloroplast
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789862.002373-CDS-P-littoralis_Contig18:212194..2126621680789862.002373-CDS-P-littoralis_Contig18:212194..212662Pylaiella littoralis U1_48CDSP-littoralis_Contig18 212195..212662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789862.0113244-UTR-P-littoralis_Contig18:212662..2127941680789862.0113244-UTR-P-littoralis_Contig18:212662..212794Pylaiella littoralis U1_48UTRP-littoralis_Contig18 212663..212794 +
1680789862.0221827-UTR-P-littoralis_Contig18:212947..2130031680789862.0221827-UTR-P-littoralis_Contig18:212947..213003Pylaiella littoralis U1_48UTRP-littoralis_Contig18 212948..213003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig18.43.1prot_P-littoralis_Contig18.43.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig18 212195..212662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig18.43.1

>prot_P-littoralis_Contig18.43.1 ID=prot_P-littoralis_Contig18.43.1|Name=mRNA_P-littoralis_Contig18.43.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MSRHCVSVLLLVCNAQACLAFVPSWTATFRSSRLQPPASTPAAATFSLSQ
LSGAICPVFGPCGAYGAAHMFYPVRGITSLSAMSEGDEEEGGGDHDAREA
ADGSPAADEIRAVQDEIRGVERKIEGAEEETAEVVKKIDGTVLRLLLLGA
PGTSE*
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mRNA from alignment at P-littoralis_Contig18:212195..213003+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig18.43.1 ID=mRNA_P-littoralis_Contig18.43.1|Name=mRNA_P-littoralis_Contig18.43.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=809bp|location=Sequence derived from alignment at P-littoralis_Contig18:212195..213003+ (Pylaiella littoralis U1_48)
ATGTCAAGGCATTGTGTGTCGGTTCTTCTCCTGGTTTGTAACGCACAAGC
CTGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCACGCT
TGCAGCCCCCTGCTTCCACGCCTGCGGCGGCGACGTTTTCGCTCTCGCAG
CTCTCTGGTGCGATCTGCCCTGTGTTCGGGCCGTGTGGCGCTTATGGGGC
GGCGCACATGTTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGATGA
GCGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCT
GCCGATGGCAGTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGAT
CCGTGGTGTAGAGCGCAAGATCGAGGGTGCAGAGGAGGAGACGGCAGAGG
TTGTCAAGAAGATTGATGGTACAGTATTGAGGCTGCTATTGCTGGGGGCT
CCAGGTACCTCGGAATGACCGACCCCGAAGCCCTGTTGAAGCAACTAGAC
AGGAAGGAGGACGAGAAGGAGAAACTTCGCAGGAAGGAGGAGCAGCTCCG
CGAGCTCCTTTTGAAGGAGAAGGACCGGCTCTCCAGGATTGAGCAGCTCC
GTGCCAGCAACGCCCCCGCAGGTATAGAAGCGTCCCATGATGTGTGAAAA
TCCACAGCAGTGTACAGATTAGGAAAGGCATGCAGGTCGCCCACAATAAA
AGCAGACCATTTGAAACAATTCTAGGAGTTCCTTGTGGCCGGTACAGTGG
TAGTGCTGTCGTTTTGCACGGGCAATTCGCCTCCTCTTCAAAGCAATCTG
TGGACGTTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig18:212195..213003+

>mRNA_P-littoralis_Contig18.43.1 ID=mRNA_P-littoralis_Contig18.43.1|Name=mRNA_P-littoralis_Contig18.43.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig18:212195..213003+ (Pylaiella littoralis U1_48)
ATGTCAAGGCATTGTGTGTCGGTTCTTCTCCTGGTTTGTAACGCACAAGC
CTGCTTGGCCTTCGTCCCGAGCTGGACTGCGACGTTCAGGTCGTCACGCT
TGCAGCCCCCTGCTTCCACGCCTGCGGCGGCGACGTTTTCGCTCTCGCAG
CTCTCTGGTGCGATCTGCCCTGTGTTCGGGCCGTGTGGCGCTTATGGGGC
GGCGCACATGTTTTACCCGGTGCGAGGGATCACGAGCTTGAGCGCGATGA
GCGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATGATGCGCGAGAAGCT
GCCGATGGCAGTCCGGCGGCGGACGAGATCCGTGCGGTCCAGGATGAGAT
CCGTGGTGTAGAGCGCAAGATCGAGGGTGCAGAGGAGGAGACGGCAGAGG
TTGTCAAGAAGATTGATGGTACAGTATTGAGGCTGCTATTGCTGGGGGCT
CCAGGTACCTCGGAATGA
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