mRNA_P-littoralis_Contig179.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig179.83.1
Unique NamemRNA_P-littoralis_Contig179.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 4.220e-89
Identity = 130/191 (68.06%), Postives = 154/191 (80.63%), Query Frame = 2
Query:  227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKLVYSAPPAK 799
            LQEEWR+KPVR NK I + ++TTAV V+PLGKES +HI+  ++ADLL+PLPG+ V YKFGLKLYSL QN+NFRARKG K  R+CC R GW T P++EAYDEILQILVEKT+EAV+MF   IP  + D F+ H++SIL YKD  VPEQRKLYERRRNKVLNN+AV VTDNL R+  WS KKRKLVY A P +
Sbjct:   83 LQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273          
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 276 bits (706), Expect = 2.310e-88
Identity = 132/191 (69.11%), Postives = 155/191 (81.15%), Query Frame = 2
Query:  227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKLVYSAPPAK 799
            LQEEWR+KPVR NK + V A+TTAV V+PLGKES QHITS ++ADLL+PLPG+ V YKFGLKLYSL QN+NFRARKG K  R+CC R GW T P++EAYDEILQILVEKT+EAV+MF   IP  + D F+ +++SIL +KD  VPEQRKLYERRRNKVLNN+AV VTDNL R+  WS KKRKLVY A P +
Sbjct:  181 LQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371          
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 2.590e-75
Identity = 122/188 (64.89%), Postives = 137/188 (72.87%), Query Frame = 2
Query:  230 QEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKLVYSAPP 793
            QEEWR+KPV  NK I V ANTTAV VHPLGKES QH TS+FIADLL+PLPG+ V  KFGLKLYSL QN+NFR RKG K  R+CC R GW T P+EEAYDEILQILV+KT+EAV++                   IL YKD   PEQRKLYERRR  +LNN+AV VTDN+ R+  WS KKRKLVY APP
Sbjct:   84 QEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250          
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 7.970e-46
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = 2
Query:  227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKK 766
            LQEEWR K  RA+ S    A+T  ++V+PLG+ES QHIT E++ DLLK    + V +KFGLKLYSL QNVNFR RK Y  VR+   ++ W T  K+EAYDEIL +LVEKT EAV M+   +    ++ F      +L+ +D  VPE++KLYE+RRNK L+ +AV V   LS+L  W GK+
Sbjct:   86 LQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT-KDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKR 263          
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 8.230e-45
Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = 2
Query:  227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKK 766
            LQEEWR K  RA+ S    A+T  ++V+PLG+ES QHIT E++ DLLK    + V +KFGLKLYSL QNVNFR RK Y  VR+   ++ W T  K+EAYDEIL +LVEKT EAV M+   +    ++ F      +L+ +D PVPE++KLYE+ RNK L+ +AV V   LS+L  W GK+
Sbjct: 2214 LQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT-KDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391          
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.590e-34
Identity = 75/133 (56.39%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  347 EFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRL 745
            EFIADLL  L G+ V YKFG+KLY LEQNVNFRARKG K+V                                    +G +P CHID FEK AESILD KD  VPEQRKLYER RNKVLNN+AV+VTDNLSRL
Sbjct:   98 EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194          
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.900e-17
Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  257 RANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRA--RKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKL 775
            RA K+ V     T V+V+P+GKES  HIT E I +LL    G  V+++FG KLY+LE+N+NF+   + G+   RL    + W T  K   +  +L+ L +  +EAV  +  KIP   ++ FE     I    D  + E   +Y +      N +A ++ + L R+   +GKK KL
Sbjct:  121 RAEKTAV-----TLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LP42_ECTSI4.220e-8968.06EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN59_ESV1K2.310e-8869.11EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K0V6_9PHAE2.590e-7564.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE7.970e-4650.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE8.230e-4550.56Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K135_9PHAE1.590e-3456.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA4_9PHAE9.900e-1734.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig179contigP-littoralis_Contig179:422672..423470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size799
Hectar predicted targeting categoryother localisation
Exons1
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.1379163-CDS-P-littoralis_Contig179:422671..4231961680789856.1379163-CDS-P-littoralis_Contig179:422671..423196Pylaiella littoralis U1_48CDSP-littoralis_Contig179 422672..423196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789856.147162-UTR-P-littoralis_Contig179:423196..4234701680789856.147162-UTR-P-littoralis_Contig179:423196..423470Pylaiella littoralis U1_48UTRP-littoralis_Contig179 423197..423470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig179.83.1prot_P-littoralis_Contig179.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig179 422672..423196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig179.83.1

>prot_P-littoralis_Contig179.83.1 ID=prot_P-littoralis_Contig179.83.1|Name=mRNA_P-littoralis_Contig179.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MALRHRNLRVKANPSCFDLSTVLEAVRTDLNLIYLGIWYHDGSVYVYAQS
AERMSDIMLTKALKDHMVMTNIAPLAARGVAIEACSCKQEHCRQRQHYRC
SRAPSGQGVFSTHHQRVHRGFAETPSWTPCLVQIWVKAVLVRAKRELPGT
QRVQEGQAVLWPQWMDNRSKGRGI*
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mRNA from alignment at P-littoralis_Contig179:422672..423470+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig179.83.1 ID=mRNA_P-littoralis_Contig179.83.1|Name=mRNA_P-littoralis_Contig179.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=799bp|location=Sequence derived from alignment at P-littoralis_Contig179:422672..423470+ (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAACCTCAGGGTGAAGGCGAACCCATCGTGCTT TGACTTGAGCACCGTGTTGGAAGCTGTCCGTACGGATCTGAATCTTATCT ACCTAGGTATATGGTATCATGACGGCAGTGTGTACGTGTACGCGCAAAGC GCGGAGCGCATGTCCGACATCATGCTTACCAAAGCATTGAAGGACCACAT GGTCATGACTAACATCGCCCCGTTAGCTGCAAGAGGAGTGGCGATCGAAG CCTGTTCGTGCAAACAAGAGCATTGTCGTCAACGCCAACACTACCGCTGT AGTCGTGCACCCTCTGGGCAAGGAGTCTTTTCAACACATCACCAGCGAGT TCATCGCGGATTTGCTGAAACCCCTTCCTGGACTCCATGTCTTGTACAAA TTTGGGTTAAAGCTGTACTCGTTAGAGCAAAACGTGAACTTCCGGGCACG CAAAGGGTACAAGAAGGTCAGGCTGTGTTGTGGCCGCAATGGATGGACAA CCGCTCCAAAGGAAGAGGCATATGACGAGATCCTGCAAATCCTAGTTGAG AAGACCCAAGAGGCTGTAAACATGTTCACCGGGAAAATCCCGCCTTGCCA CATCGATCCTTTCGAGAAGCACGCAGAGAGTATCCTTGACTACAAGGACT GCCCCGTTCCCGAGCAGAGGAAGTTGTATGAGAGAAGGAGGAATAAGGTG CTCAACAATGTCGCTGTTCACGTGACCGACAACTTGAGTCGGTTGAGGAG CTGGAGCGGCAAGAAGCGCAAGCTCGTCTACAGCGCGCCGCCCGCCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig179:422672..423470+

>mRNA_P-littoralis_Contig179.83.1 ID=mRNA_P-littoralis_Contig179.83.1|Name=mRNA_P-littoralis_Contig179.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig179:422672..423470+ (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAACCTCAGGGTGAAGGCGAACCCATCGTGCTT
TGACTTGAGCACCGTGTTGGAAGCTGTCCGTACGGATCTGAATCTTATCT
ACCTAGGTATATGGTATCATGACGGCAGTGTGTACGTGTACGCGCAAAGC
GCGGAGCGCATGTCCGACATCATGCTTACCAAAGCATTGAAGGACCACAT
GGTCATGACTAACATCGCCCCGTTAGCTGCAAGAGGAGTGGCGATCGAAG
CCTGTTCGTGCAAACAAGAGCATTGTCGTCAACGCCAACACTACCGCTGT
AGTCGTGCACCCTCTGGGCAAGGAGTCTTTTCAACACATCACCAGCGAGT
TCATCGCGGATTTGCTGAAACCCCTTCCTGGACTCCATGTCTTGTACAAA
TTTGGGTTAAAGCTGTACTCGTTAGAGCAAAACGTGAACTTCCGGGCACG
CAAAGGGTACAAGAAGGTCAGGCTGTGTTGTGGCCGCAATGGATGGACAA
CCGCTCCAAAGGAAGAGGCATATGA
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