mRNA_P-littoralis_Contig179.83.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 275 bits (702), Expect = 4.220e-89 Identity = 130/191 (68.06%), Postives = 154/191 (80.63%), Query Frame = 2
Query: 227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKLVYSAPPAK 799
LQEEWR+KPVR NK I + ++TTAV V+PLGKES +HI+ ++ADLL+PLPG+ V YKFGLKLYSL QN+NFRARKG K R+CC R GW T P++EAYDEILQILVEKT+EAV+MF IP + D F+ H++SIL YKD VPEQRKLYERRRNKVLNN+AV VTDNL R+ WS KKRKLVY A P +
Sbjct: 83 LQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 276 bits (706), Expect = 2.310e-88 Identity = 132/191 (69.11%), Postives = 155/191 (81.15%), Query Frame = 2
Query: 227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKLVYSAPPAK 799
LQEEWR+KPVR NK + V A+TTAV V+PLGKES QHITS ++ADLL+PLPG+ V YKFGLKLYSL QN+NFRARKG K R+CC R GW T P++EAYDEILQILVEKT+EAV+MF IP + D F+ +++SIL +KD VPEQRKLYERRRNKVLNN+AV VTDNL R+ WS KKRKLVY A P +
Sbjct: 181 LQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 239 bits (609), Expect = 2.590e-75 Identity = 122/188 (64.89%), Postives = 137/188 (72.87%), Query Frame = 2
Query: 230 QEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKLVYSAPP 793
QEEWR+KPV NK I V ANTTAV VHPLGKES QH TS+FIADLL+PLPG+ V KFGLKLYSL QN+NFR RKG K R+CC R GW T P+EEAYDEILQILV+KT+EAV++ IL YKD PEQRKLYERRR +LNN+AV VTDN+ R+ WS KKRKLVY APP
Sbjct: 84 QEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 171 bits (432), Expect = 7.970e-46 Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = 2
Query: 227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKK 766
LQEEWR K RA+ S A+T ++V+PLG+ES QHIT E++ DLLK + V +KFGLKLYSL QNVNFR RK Y VR+ ++ W T K+EAYDEIL +LVEKT EAV M+ + ++ F +L+ +D VPE++KLYE+RRNK L+ +AV V LS+L W GK+
Sbjct: 86 LQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT-KDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKR 263
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 171 bits (434), Expect = 8.230e-45 Identity = 91/180 (50.56%), Postives = 120/180 (66.67%), Query Frame = 2
Query: 227 LQEEWRSKPVRANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKK 766
LQEEWR K RA+ S A+T ++V+PLG+ES QHIT E++ DLLK + V +KFGLKLYSL QNVNFR RK Y VR+ ++ W T K+EAYDEIL +LVEKT EAV M+ + ++ F +L+ +D PVPE++KLYE+ RNK L+ +AV V LS+L W GK+
Sbjct: 2214 LQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRT-KDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.590e-34 Identity = 75/133 (56.39%), Postives = 82/133 (61.65%), Query Frame = 2
Query: 347 EFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRARKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRL 745
EFIADLL L G+ V YKFG+KLY LEQNVNFRARKG K+V +G +P CHID FEK AESILD KD VPEQRKLYER RNKVLNN+AV+VTDNLSRL
Sbjct: 98 EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 9.900e-17 Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = 2
Query: 257 RANKSIVVNANTTAVVVHPLGKESFQHITSEFIADLLKPLPGLHVLYKFGLKLYSLEQNVNFRA--RKGYKKVRLCCGRNGWTTAPKEEAYDEILQILVEKTQEAVNMFTGKIPPCHIDPFEKHAESILDYKDCPVPEQRKLYERRRNKVLNNVAVHVTDNLSRLRSWSGKKRKL 775
RA K+ V T V+V+P+GKES HIT E I +LL G V+++FG KLY+LE+N+NF+ + G+ RL + W T K + +L+ L + +EAV + KIP ++ FE I D + E +Y + N +A ++ + L R+ +GKK KL
Sbjct: 121 RAEKTAV-----TLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig179.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig179.83.1 >prot_P-littoralis_Contig179.83.1 ID=prot_P-littoralis_Contig179.83.1|Name=mRNA_P-littoralis_Contig179.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp MALRHRNLRVKANPSCFDLSTVLEAVRTDLNLIYLGIWYHDGSVYVYAQSback to top mRNA from alignment at P-littoralis_Contig179:422672..423470+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig179.83.1 ID=mRNA_P-littoralis_Contig179.83.1|Name=mRNA_P-littoralis_Contig179.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=799bp|location=Sequence derived from alignment at P-littoralis_Contig179:422672..423470+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig179:422672..423470+ >mRNA_P-littoralis_Contig179.83.1 ID=mRNA_P-littoralis_Contig179.83.1|Name=mRNA_P-littoralis_Contig179.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig179:422672..423470+ (Pylaiella littoralis U1_48)back to top |