mRNA_P-littoralis_Contig178.97.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.97.1
Unique NamemRNA_P-littoralis_Contig178.97.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: D7FIX8_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX8_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 3.310e-47
Identity = 90/154 (58.44%), Postives = 110/154 (71.43%), Query Frame = 3
Query:  432 LLEAQIELAAAGDKVAASADALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWAGTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            L EA IEL+ A  +  A A ALAAVYGPDVA G+++ VVELSVRG  M TL STL+ CP S LA +F+ED+WPA  KDVD +GRR+IDC PSVF+K+LDVLRM KR  WA      G +E   V IKAGDR +FE+FV+  F G  +SF+M+ V
Sbjct:    7 LQEAGIELSPAKARTTACATALAAVYGPDVANGQEEDVVELSVRGTEMMTLRSTLRICPSSALAARFDEDKWPAAKKDVDSNGRRVIDCKPSVFSKVLDVLRMAKRVRWADDEKLEGMNETPRVTIKAGDRFAFEEFVDMYFKG-CESFIMEHV 159          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 9.150e-47
Identity = 97/154 (62.99%), Postives = 111/154 (72.08%), Query Frame = 3
Query:  432 LLEAQIELAAAGDKVAASADALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWAGTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            L +A+ EL  A  K AAS DALAAVYGP+VA G  D VVELSVRG RMTTL STLQAC ES LA  FNED+WP TDKDVDE GRRLI+CSP+VF K+LDVLRMRKRAAWA +       EL  V + A DR +F+ FV   FPG  ++F+ D V
Sbjct:  399 LHQAEAELEQAHSKAAASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLQACRESALAALFNEDKWPPTDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDR-----ELAHVRVDAADRPAFDSFVNMYFPG-FENFITDMV 546          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.940e-44
Identity = 94/154 (61.04%), Postives = 109/154 (70.78%), Query Frame = 3
Query:  432 LLEAQIELAAAGDKVAASADALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWAGTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            L +A+ EL  A  K A S  ALAAVYGP+VA G  D VVELSVRG RMTTL STL+AC ES LA  FNED+WPATDKDVDE GRRLI+CSP+VF K+LDVLRMRKRAAWA +       E   V + A DR +F+ FV   FPG  ++F+ D V
Sbjct:  377 LYQAEAELEHAHSKAAVSGRALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLRACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDR-----ESAHVRVDAADRPAFDSFVNMFFPG-FENFITDMV 524          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: A0A6H5JCR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR8_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 6.460e-43
Identity = 97/159 (61.01%), Postives = 111/159 (69.81%), Query Frame = 3
Query:  432 LLEAQIELAAAGDKVAASADALAAVYGPDVAAGKDDLVVELSVRG----RRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLI-DCSPSVFAKILDVLRMRKRAAWAGTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            L  AQ EL  A    AAS +ALAAVYGP++AAG +D VVELSVRG     RMTTLLSTLQACPES LA +F+E +WP TDK+ D HGRR+I DCSP VFAK+LDVLRM+KR AWA    +      V V IKA DR  FEKFV   FP   +SF+MD V
Sbjct:  367 LHTAQRELVKANTIAAASVEALAAVYGPNIAAGVEDRVVELSVRGPRKTERMTTLLSTLQACPESALAARFDEAKWPVTDKEKDAHGRRVIKDCSPLVFAKVLDVLRMKKREAWADDDKKVRA--AVLVAIKAADRAPFEKFVNMYFPA-CESFIMDSV 522          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.050e-42
Identity = 96/159 (60.38%), Postives = 110/159 (69.18%), Query Frame = 3
Query:  432 LLEAQIELAAAGDKVAASADALAAVYGPDVAAGKDDLVVELSVRG----RRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLI-DCSPSVFAKILDVLRMRKRAAWAGTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            L  AQ EL  A    AAS  ALAAVYGP  AAG  D +VELSVRG     RMTTLLSTLQACPES LA +F+E +WP T+KD D HGRR++ DCSPSVF+K+LDVLRM+KR AWAG   + G    V V IK  DR  FE+FV   FPG  +SF+MD V
Sbjct:  375 LHTAQRELVQANTMAAASLKALAAVYGPHTAAGVKDPIVELSVRGSRTTERMTTLLSTLQACPESALAARFDEAKWPVTEKDKDAHGRRVMKDCSPSVFSKVLDVLRMKKREAWAGDDGKMGA--AVLVAIKDADRAPFEEFVNMYFPG-CESFIMDSV 530          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 6.760e-41
Identity = 88/151 (58.28%), Postives = 109/151 (72.19%), Query Frame = 3
Query:  432 LLEAQIELAAAGDKVAASADALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWAGTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMM 884
            L +A IELA A  +  A A ALAAVYGPDVA+G+ + VVELSVRG  MTTL STL+ CP+S LA +F+E +WPA  KD+D  GRR+IDC P+VF+K+LDVLR+ KRAAWAG     G  E   V IK GDR +FE+FV+  F G  +SF+M
Sbjct:  419 LQDAGIELALAKARTTACATALAAVYGPDVASGQQEDVVELSVRGTAMTTLRSTLRVCPDSALAARFDEGKWPAAKKDLDSDGRRMIDCRPAVFSKVLDVLRIAKRAAWAGGENLQGMKE-TRVTIKPGDRVAFEEFVDMYFKG-CESFIM 567          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.320e-39
Identity = 87/158 (55.06%), Postives = 112/158 (70.89%), Query Frame = 3
Query:  432 LLEAQIELAAAGDKVAASADALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWAGTALQPGCDEL----VCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            L EA  EL+ A  +  A A A+AAVYGP+VA G +D VVEL+VRG RMTTL STL+ CP+S LA  FNE++WP  +KD+D +GRR+IDC PSVF+K+LDVLR+ KRAAWA +   P  +E       V IKAGD  +FE+FV+  FP   ++FMM+ V
Sbjct:  362 LQEAANELSLAKARTMACATAVAAVYGPEVATGTEDDVVELNVRGTRMTTLRSTLRICPDSALAAWFNEEQWPVAEKDLDSNGRRIIDCKPSVFSKVLDVLRIAKRAAWARSEEGPVRNEKRRVKPRVTIKAGDCAAFEEFVDMYFPC-CETFMMEHV 518          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: A0A6H5JQU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU4_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 6.740e-37
Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  486 ADALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWAGTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            A ALAAVY PD+A G +   +ELSVRG RMTTL STL+ CP+S LAT+F+ED+WPA  KD+D +GRR+IDC P+VF+K+LDVLRM  RA+WAG+      +E   V +K GDR +FE+FV   FPG  +S ++D V
Sbjct:  274 ATALAAVYCPDMAMGLEVDFMELSVRGTRMTTLRSTLRVCPDSALATRFDEDKWPAAKKDLDSNGRRVIDCKPAVFSKVLDVLRMATRASWAGSEKSQQVNEKPRVTMKVGDRVAFEEFVGMNFPG-CESCILDFV 408          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: D7FSV1_ECTSI (Potassium channel tetramerisation domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV1_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.810e-34
Identity = 76/146 (52.05%), Postives = 96/146 (65.75%), Query Frame = 3
Query:  480 ASADALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWA--------GTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            A+ +AL  VYGPD+A+GK D VVELSVRG RMTTL STL ACP+S   T FN + W  T+KD+D+HGRR++DC P+VFAK+LDVLRM+K A WA        G   +P     V V ++  DR   E+   K FPG  + F+MD V
Sbjct:  178 AALEALTNVYGPDIASGKKDEVVELSVRGVRMTTLRSTLTACPDSVFTTWFNGN-WKPTEKDLDKHGRRMLDCKPAVFAKVLDVLRMKKWAGWAPSEDAGGGGVVAKP-----VPVAVRPADRACLEELGNKYFPG-CERFIMDLV 316          
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Match: A0A6H5JLT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT7_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.830e-33
Identity = 82/171 (47.95%), Postives = 107/171 (62.57%), Query Frame = 3
Query:  408 AHGRAHGTLLEAQIELAAAGDKVAASA-DALAAVYGPDVAAGKDDLVVELSVRGRRMTTLLSTLQACPESFLATKFNEDRWPATDKDVDEHGRRLIDCSPSVFAKILDVLRMRKRAAWA--------GTALQPGCDELVCVIIKAGDRDSFEKFVEKRFPGDLQSFMMDCV 893
            AH RA+   +   + LA A  KVA++A +AL  VYGPD+ +GK D VVELSVRG RMTTL STL  CP+S   T FN + W  T+KD+D+HG  ++DC P+VFAK+LDVLRM+KRA WA        G  ++P     V V ++   R   E+FV K   G  + F+MD V
Sbjct:  173 AHDRAYLENVSHALGLARAKAKVASAALEALTNVYGPDIVSGKKDEVVELSVRGVRMTTLRSTLTVCPDSVFTTWFNGN-WKPTEKDLDKHGGGMLDCKPTVFAKVLDVLRMKKRAGWAPSEDAGGGGVVVKP-----VPVAVRPAGRACLEEFVNKYLSG-CERFIMDLV 336          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FIX8_ECTSI3.310e-4758.44BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G2H5_ECTSI9.150e-4762.99TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L232_9PHAE1.940e-4461.04TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JCR8_9PHAE6.460e-4361.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV0_ECTSI2.050e-4260.38TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LAP0_9PHAE6.760e-4158.28TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX7_ECTSI2.320e-3955.06BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQU4_9PHAE6.740e-3756.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSV1_ECTSI4.810e-3452.05Potassium channel tetramerisation domain containin... [more]
A0A6H5JLT7_9PHAE5.830e-3347.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:444273..445165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size893
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789855.8655636-CDS-P-littoralis_Contig178:444272..4447941680789855.8655636-CDS-P-littoralis_Contig178:444272..444794Pylaiella littoralis U1_48CDSP-littoralis_Contig178 444273..444794 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789855.8763626-UTR-P-littoralis_Contig178:444794..4451651680789855.8763626-UTR-P-littoralis_Contig178:444794..445165Pylaiella littoralis U1_48UTRP-littoralis_Contig178 444795..445165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.97.1prot_P-littoralis_Contig178.97.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 444273..444794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.97.1

>prot_P-littoralis_Contig178.97.1 ID=prot_P-littoralis_Contig178.97.1|Name=mRNA_P-littoralis_Contig178.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
MLKDGNVSRPTPFQPAKWGIFSEKGSTAVYRGSCHGPCFGGGHDFHVNLT
PPHHTLTVRKSSYDIEAPILMLNGRSVVEIETFTVSSTAATALPLPAEPA
CSTTTAIADPTRFRSTPPLEQHANDIDTFGKAIAGSLMEERMALCLKPKS
SLLQQVTRSQPPPTPWPPCTARM*
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mRNA from alignment at P-littoralis_Contig178:444273..445165+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.97.1 ID=mRNA_P-littoralis_Contig178.97.1|Name=mRNA_P-littoralis_Contig178.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=893bp|location=Sequence derived from alignment at P-littoralis_Contig178:444273..445165+ (Pylaiella littoralis U1_48)
ATGCTCAAGGACGGCAATGTAAGCAGGCCGACCCCCTTCCAACCCGCGAA ATGGGGAATCTTCAGTGAAAAGGGCAGCACCGCCGTTTACCGTGGTTCAT GCCATGGTCCCTGCTTTGGTGGAGGCCATGACTTTCATGTCAATCTAACT CCTCCTCATCACACCCTAACGGTGAGGAAGAGCTCTTACGACATAGAGGC GCCCATTTTGATGCTAAACGGGCGGTCCGTGGTGGAGATCGAGACGTTCA CGGTGTCTTCCACGGCAGCTACCGCTCTACCGCTGCCAGCCGAGCCGGCA TGCAGCACGACGACCGCCATTGCTGACCCAACACGGTTTCGATCTACTCC GCCGTTGGAGCAACACGCTAACGACATCGACACGTTCGGCAAGGCAATCG CGGGCTCGCTCATGGAAGAGCGCATGGCACTCTGCTTGAAGCCCAAATCG AGCTTGCTGCAGCAGGTGACAAGGTCGCAGCCTCCGCCGACGCCTTGGCC GCCGTGTACGGCCCGGATGTAGCCGCTGGCAAAGATGACCTCGTGGTCGA GCTAAGCGTGCGTGGGAGAAGGATGACCACTCTACTCTCCACTCTGCAGG CTTGCCCGGAATCGTTCTTGGCGACGAAGTTCAATGAAGACAGGTGGCCG GCCACCGACAAGGATGTGGACGAGCACGGGCGTCGGTTGATCGACTGCAG CCCTTCCGTTTTCGCCAAGATTTTGGATGTGCTGAGAATGAGGAAGCGCG CAGCATGGGCGGGAACCGCACTGCAACCGGGATGCGATGAGCTAGTTTGT GTCATCATCAAGGCGGGTGACCGTGACTCTTTCGAGAAGTTCGTTGAGAA GCGCTTCCCAGGCGACCTCCAGAGCTTCATGATGGACTGCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:444273..445165+

>mRNA_P-littoralis_Contig178.97.1 ID=mRNA_P-littoralis_Contig178.97.1|Name=mRNA_P-littoralis_Contig178.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig178:444273..445165+ (Pylaiella littoralis U1_48)
ATGCTCAAGGACGGCAATGTAAGCAGGCCGACCCCCTTCCAACCCGCGAA
ATGGGGAATCTTCAGTGAAAAGGGCAGCACCGCCGTTTACCGTGGTTCAT
GCCATGGTCCCTGCTTTGGTGGAGGCCATGACTTTCATGTCAATCTAACT
CCTCCTCATCACACCCTAACGGTGAGGAAGAGCTCTTACGACATAGAGGC
GCCCATTTTGATGCTAAACGGGCGGTCCGTGGTGGAGATCGAGACGTTCA
CGGTGTCTTCCACGGCAGCTACCGCTCTACCGCTGCCAGCCGAGCCGGCA
TGCAGCACGACGACCGCCATTGCTGACCCAACACGGTTTCGATCTACTCC
GCCGTTGGAGCAACACGCTAACGACATCGACACGTTCGGCAAGGCAATCG
CGGGCTCGCTCATGGAAGAGCGCATGGCACTCTGCTTGAAGCCCAAATCG
AGCTTGCTGCAGCAGGTGACAAGGTCGCAGCCTCCGCCGACGCCTTGGCC
GCCGTGTACGGCCCGGATGTAG
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