mRNA_P-littoralis_Contig178.77.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig178.77.1
Unique NamemRNA_P-littoralis_Contig178.77.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KFX8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.130e-21
Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 3
Query:  201 TAQRIRREFGSAVAYNATVLASYSEEVEDVLRGLVSS-QPLINLCHAQAGTELVDLEVTTGR---TREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            T Q +RRE G + +Y+   +         V  G +S  +  +NL         +D     GR   +  D SM+ARTSL  F+ L +  DV    +  V YKLT    S+++V G G  +LCSCL+LLQHG PCRH FAV+   +    L  +  TF+A CVH RWR    + DE W+ S ++
Sbjct:   32 TNQDVRRELGGSQSYDVERIVDRQPAQHPVKVGQISDLRERLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVSLVL 211          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KAB1_9PHAE (SWIM-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.200e-21
Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 3
Query:  201 TAQRIRREFGSAVAYNATVLASYSEEVEDVLRGLVSS-QPLINLCHAQAGTELVDLEVTTGR---TREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWT 713
            T Q +RRE G + +Y+   +       + V  G +S+ +  +NL         +D     GR   +  D SM+ARTSL  F+ L +  DV    +  V YKLT    S+++V G G  +LCSCL+LLQHG PCRH FAV+   +    L  +  TF+A CVH RWR    + DE W+
Sbjct:  418 TNQDVRRELGGSQSYDVEPIVDRQPAQDPVKVGQISALRNRLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQASDVDDEPWS 592          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.350e-21
Identity = 65/178 (36.52%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  213 IRREFGSAVAYNATVLASYSEEVEDVLRGLVSS-QPLINLCHAQAGTELVDLEVTTGR---TREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            +RRE G + +Y+   +       + V  G +S  +  +NL         +D     GR   +  D SM+ARTSL  F+ L +  DV    +  V YKLT    S+++V G G  +LCSCL+LLQHG PCRH FAV+   +    L  +  TF+A CVH RWR    + DE W+ S ++
Sbjct:  399 VRRELGGSQSYDVERIVDRQPAQDPVKVGQISDFRERLNLLQPPPPATDLDEGCENGREGGSLVDTSMWARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGEKDLPGSGHTFNAACVHNRWRQAPDVDDEPWSVSLVL 574          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.990e-18
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  378 GRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            G    D +M+ARTSL AF+DL+E  D+ IE VV V YK TA   S++VV G    +LCSCLQLL+   PCRH FAV+  L G       ++   TF+  CVH RWR      D  WT S ++
Sbjct:  916 GEAAVDNTMWARTSLSAFLDLIE--DIPIELVVAVRYKWTANRPSHLVVFGPHNFHLCSCLQLLRRRLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREDGNDSSWTISSVL 1035          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.620e-18
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  378 GRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            G    D +M+ARTSL AF+DL+E  D+ IE  V V YK  A   S++VV G    +LCSCLQLL+ G PCRH FAV+  L G       ++   TF+  CVH RWR    + D  W+ S ++
Sbjct:  229 GEAAVDNTMWARTSLSAFLDLIE--DIPIELFVAVRYKRAANRPSHLVVFGLHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFTHTFNGACVHNRWRRREVVNDSPWSISSVL 348          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.810e-17
Identity = 68/207 (32.85%), Postives = 103/207 (49.76%), Query Frame = 3
Query:  129 IILETFFSVSLTTSSSRHDPCIFPTAQRIRREFGSA--VAYNATVLASYSEEVEDVLRGLVSSQPLINLCHAQAGTELVDLEVTTGRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            +I+ +  S + +     H  C    AQ    E  S+  V  N   L  +  ++  +     S +  +N+ H       ++ +   G    D +M+ART L AF+DL+E  D+ IE VV V YK TA   S++VV G    +LCSCLQLL+ G PCR  FAV+  L G       ++   TF+ +CVH RWR  +  +D  W+ S ++
Sbjct:  425 LIVRSMGSPATSQQDDCHKDCEVDEAQSYDAELVSSGRVEENGDPLPLHEHDLAKIR----SLRLKLNILHVAPPDTDLEGDQLAGEAAVDNTMWARTLLSAFLDLIE--DIPIELVVAVRYKWTANRPSHLVVFGHHNFHLCSCLQLLRCGLPCRDYFAVLVNLIGRTGESDEMAFTHTFNGSCVHNRWRRRKDGKDLPWSISSVL 625          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.810e-17
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  405 YARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVMQ--LQGPALLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            +ARTSL  F+ L +  DV    +  V YKLT    S+++V G G  +LCSCL+LLQHG PCRH FAV+   +    L  +  TF+A CVH RWR    + DE W+ S ++
Sbjct:  658 WARTSLEDFLSLTQ--DVPTSAIFAVRYKLTPNRPSHLMVFGPGDFHLCSCLRLLQHGLPCRHYFAVLLSFIGDKYLPGSGHTFNAACVHNRWRQAPDVDDEPWSVSLVL 765          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.860e-16
Identity = 53/122 (43.44%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  378 GRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            G    D +M+AR SL AF+DL+E  D+ I+ VV V Y   A   S++VV G    +LCSCLQLL+ G PCRH FAV+  L G       ++   TF   CVH RWR      D  W+ S L+
Sbjct: 1139 GEAAVDNTMWARASLSAFLDLIE--DIPIQLVVAVRYMRAANRPSHLVVFGPHNFHLCSCLQLLRRGLPCRHYFAVLVNLIGRTGESDEMAFIHTFKGACVHNRWRRREDGNDSPWSISSLL 1258          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KKN6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.990e-11
Identity = 57/139 (41.01%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  216 RREFGSAVAYNATVLASYS-EEVEDVL----RGLVSSQPL-INLCHAQAGTELVDLE--VTTGRTREDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM 608
            +R  G A +Y+A +++S   EE  D L      L   + L + L   Q      DLE     G    D +M+A TSL A +DL+E  D+ IE VV V YK T    S++VV G   ++LCSCLQLL+ G PCRH FAV+
Sbjct:  203 QRTEGEAQSYDAELVSSGRVEENGDPLPLYEHDLAKIRSLCLKLNILQVAPPDTDLEGDQLAGEAAVDNTMWAPTSLSASLDLIE--DIPIELVVAVRYKWTPNRPSHLVVFGPHNLHLCSCLQLLRRGLPCRHYFAVL 339          
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.320e-11
Identity = 49/118 (41.53%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  390 EDLSMYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLCSCLQLLQHGFPCRHVFAVM-QLQGPA----LLSTCCTFDANCVHPRWRNIRSLQDEKWTASELV 728
            ED +M+A TSL AF++L+ G    IE V  V YK +A   S++V  G    +L SCLQLL+ G PCRH FAV+  L G        S    FD +CVH RWR     +   W+ S ++
Sbjct:  535 EDNTMWACTSLLAFLELVAGFP--IELVAAVRYKYSANNPSHLVAFGPHNFHLRSCLQLLRRGLPCRHYFAVLANLIGRTGESDEWSFTHAFDGSCVHNRWRQSDDGKVLPWSVSFVL 650          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig178.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KFX8_9PHAE1.130e-2136.81SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAB1_9PHAE4.200e-2137.29SWIM-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JP13_9PHAE8.350e-2136.52SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KBY4_9PHAE2.990e-1845.90SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L372_9PHAE6.620e-1844.26SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KB76_9PHAE1.810e-1732.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG54_9PHAE5.810e-1744.55SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9T1_9PHAE2.860e-1643.44SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KKN6_9PHAE1.990e-1141.01SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KWM8_9PHAE2.320e-1141.53MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig178contigP-littoralis_Contig178:401632..402395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLF6
PFAMsMULE
Model size764
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.17e-10
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789855.536523-CDS-P-littoralis_Contig178:401631..4019941680789855.536523-CDS-P-littoralis_Contig178:401631..401994Pylaiella littoralis U1_48CDSP-littoralis_Contig178 401632..401994 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789855.550999-UTR-P-littoralis_Contig178:401994..4023951680789855.550999-UTR-P-littoralis_Contig178:401994..402395Pylaiella littoralis U1_48UTRP-littoralis_Contig178 401995..402395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig178.77.1prot_P-littoralis_Contig178.77.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig178 401632..401994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig178.77.1

>prot_P-littoralis_Contig178.77.1 ID=prot_P-littoralis_Contig178.77.1|Name=mRNA_P-littoralis_Contig178.77.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MYARTSLRAFVDLLEGSDVVIEHVVRVSYKLTATAASNVVVLGAGGVYLC
SCLQLLQHGFPCRHVFAVMQLQGPALLSTCCTFDANCVHPRWRNIRSLQD
EKWTASELVHDKHKWTAVGEG
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mRNA from alignment at P-littoralis_Contig178:401632..402395-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig178.77.1 ID=mRNA_P-littoralis_Contig178.77.1|Name=mRNA_P-littoralis_Contig178.77.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=764bp|location=Sequence derived from alignment at P-littoralis_Contig178:401632..402395- (Pylaiella littoralis U1_48)
CTATCGGGTCCCCGGTGTAGACGCGTCCATTGGATTGATTAGTTATTCAC TCGGTTTGCCAATAGTTCCTTGTAGTTCCTTTCCCGTCCCGTTTTTACAT ATTTGAAGTACATCGTGTGAGTTGAGACATTATTCTCGAGACATTTTTCT CGGTGTCGTTAACCACCTCTTCCTCCCGACATGATCCGTGCATCTTCCCA ACTGCGCAGCGTATCCGACGCGAGTTCGGATCCGCGGTGGCATACAATGC CACAGTCTTAGCGTCTTACAGCGAGGAAGTCGAGGACGTTCTACGTGGCC TGGTGTCATCGCAACCTCTCATTAATTTGTGCCACGCGCAAGCGGGCACA GAGCTGGTGGACCTAGAAGTTACCACGGGAAGGACTCGGGAGGACCTGAG CATGTATGCGAGGACATCGCTACGAGCTTTCGTCGACTTACTTGAGGGGT CTGATGTAGTAATCGAGCATGTGGTTCGCGTCTCTTACAAATTGACGGCA ACGGCGGCGAGCAACGTCGTTGTACTAGGGGCTGGGGGTGTTTACCTTTG CTCGTGTTTGCAGCTGCTGCAGCATGGGTTTCCATGCCGACATGTTTTCG CGGTGATGCAACTGCAGGGTCCAGCTTTGCTCAGCACTTGCTGCACCTTT GATGCGAATTGTGTGCACCCCCGGTGGCGAAATATAAGGAGCCTGCAGGA CGAAAAATGGACCGCTTCTGAGTTGGTTCATGATAAACACAAGTGGACTG CGGTTGGCGAGGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig178:401632..402395-

>mRNA_P-littoralis_Contig178.77.1 ID=mRNA_P-littoralis_Contig178.77.1|Name=mRNA_P-littoralis_Contig178.77.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig178:401632..402395- (Pylaiella littoralis U1_48)
ATGTATGCGAGGACATCGCTACGAGCTTTCGTCGACTTACTTGAGGGGTC
TGATGTAGTAATCGAGCATGTGGTTCGCGTCTCTTACAAATTGACGGCAA
CGGCGGCGAGCAACGTCGTTGTACTAGGGGCTGGGGGTGTTTACCTTTGC
TCGTGTTTGCAGCTGCTGCAGCATGGGTTTCCATGCCGACATGTTTTCGC
GGTGATGCAACTGCAGGGTCCAGCTTTGCTCAGCACTTGCTGCACCTTTG
ATGCGAATTGTGTGCACCCCCGGTGGCGAAATATAAGGAGCCTGCAGGAC
GAAAAATGGACCGCTTCTGAGTTGGTTCATGATAAACACAAGTGGACTGC
GGTTGGCGAGGGT
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