mRNA_P-littoralis_Contig176.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig176.59.1
Unique NamemRNA_P-littoralis_Contig176.59.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.200e-31
Identity = 68/166 (40.96%), Postives = 99/166 (59.64%), Query Frame = 1
Query:    1 SKKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 423
            ++K R+T+VLAV  DG+KV PRII++G PF+  T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R +YT++
Sbjct:  345 NEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.220e-31
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    7 KLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 423
            K R+T+VLAV  DG+KV PRII+KG PF+                               +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V+++ GGLTP+ QPLDR +NK+ KR +R +YT++
Sbjct:  152 KERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.620e-31
Identity = 68/164 (41.46%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    7 KLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 423
            K R+T+VLAV  DG+KV PRII+KG PF   T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + G LTP+ QPLDR +NK+ KR +R +YT++
Sbjct:  152 KERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 9.050e-31
Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = 1
Query:    7 KLRYTVVLAVRGDGQKVRPRIIYKGNPFVG------------------------GTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 423
            K R+T+ LAV GD +KV  R I+KG P +                           +  GYP GG+S GVQ+ SWCD  +   W+   +  RP + S   QRP +LVLDDF+CH+++ F  +L   A T+V+ + GGLTP+ QPLDR +NK  KR +R  YT++
Sbjct:   90 KERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.150e-30
Identity = 65/164 (39.63%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    7 KLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 423
            K R+T+VLAV  DG+KV PRII+KG PF+  T +                          +PA G+S GVQ  SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+++ + GG+T + QPLDR +NK+ KR +R +YT++
Sbjct:   13 KERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTAY 176          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.430e-30
Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    7 KLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 423
            K R+T+VLAV  DG+KV  RII+ G PF+  T +                         G+PA G+S GVQ+ SW D  + + W +  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R++YT++
Sbjct:   86 KERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 8.650e-29
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   13 RYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 426
            R+T+ LAV  DG KV  +II+KG PF+                             FGYP  G+S GVQ+ +WCD  +   W+++ +             S+LVLDDFRCHR E F + L     T+V+++ GGLTP+ QPLDR +NKE KR +R RYT ++
Sbjct:  311 RFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPVSGMSFGVQEKNWCDARECILWLSESW-------------SILVLDDFRCHRSESFIEDLRRRTNTIVILIPGGLTPLFQPLDRMLNKEMKRLMRGRYTQYM 459          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.680e-28
Identity = 67/162 (41.36%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   13 RYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 420
            R+T+ LAV  DG+KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  274 RFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 434          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 2.240e-28
Identity = 68/164 (41.46%), Postives = 90/164 (54.88%), Query Frame = 1
Query:    7 KLRYTVVLAVRGDGQKVRPRIIYKGNPFV------------------------GGTNNFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 420
            K R+T+ LAV  DG KV  RII+KG PFV                           +  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V+ + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  265 KERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427          
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.300e-28
Identity = 63/162 (38.89%), Postives = 91/162 (56.17%), Query Frame = 1
Query:   13 RYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNN------------------------FGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 423
            R+ +VLAV  DG+KV PRI +KG PF   T +                         G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+ H++E F   L   A T+V+ + GGLTP+ QPLD  +NK+ KR +R +Y ++
Sbjct:   35 RFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKYIAY 196          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig176.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHT8_9PHAE2.200e-3140.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE2.220e-3140.24DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE5.620e-3141.46DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FXD3_ECTSI9.050e-3139.63DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE1.150e-3039.63DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE5.430e-3040.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE8.650e-2938.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE1.680e-2841.36DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE2.240e-2841.46DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE3.300e-2838.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig176contigP-littoralis_Contig176:174188..174682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size426
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.48e-31
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size426
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789847.231552-CDS-P-littoralis_Contig176:174187..1745061680789847.231552-CDS-P-littoralis_Contig176:174187..174506Pylaiella littoralis U1_48CDSP-littoralis_Contig176 174188..174506 -
1680789847.24269-CDS-P-littoralis_Contig176:174575..1746821680789847.24269-CDS-P-littoralis_Contig176:174575..174682Pylaiella littoralis U1_48CDSP-littoralis_Contig176 174576..174682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig176.59.1prot_P-littoralis_Contig176.59.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig176 174188..174682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig176.59.1

>prot_P-littoralis_Contig176.59.1 ID=prot_P-littoralis_Contig176.59.1|Name=mRNA_P-littoralis_Contig176.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=142bp
SKKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNNFGYPAGGISLGVQK
SSWCDGTQSDEWVTQDFMRRPGSTSRDQRPSVLVLDDFRCHREERFQKKL
MDLAKTLVVMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI
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mRNA from alignment at P-littoralis_Contig176:174188..174682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig176.59.1 ID=mRNA_P-littoralis_Contig176.59.1|Name=mRNA_P-littoralis_Contig176.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=495bp|location=Sequence derived from alignment at P-littoralis_Contig176:174188..174682- (Pylaiella littoralis U1_48)
TCAAAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACA GAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGTA CCAACAAGTCAGGCTCACCCAAGAAGCCTGGCAAGAACAGCCTGTCGTAC GAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGGCAT CAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCGACG AGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGAGAT CAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGAAGA GAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACGCTGGTGGTGATGC TTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAAC AAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCAGCTGGATC
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Coding sequence (CDS) from alignment at P-littoralis_Contig176:174188..174682-

>mRNA_P-littoralis_Contig176.59.1 ID=mRNA_P-littoralis_Contig176.59.1|Name=mRNA_P-littoralis_Contig176.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig176:174188..174682- (Pylaiella littoralis U1_48)
TCAAAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACA
GAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGGGTA
CCAACAACTTCGGCTACCCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAG
TCGTCGTGGTGCGACGGCACCCAGTCCGACGAGTGGGTAACCCAGGACTT
CATGCGCCGCCCAGGGTCTACCTCCAGAGATCAGCGTCCCAGCGTTCTCG
TGCTCGACGACTTCAGGTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTA
ATGGACCTGGCCAAGACGCTGGTGGTGATGCTTGGTGGAGGGCTGACCCC
GGTGTGCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGTG
TTCGGGCCAGGTACACCAGCTGGATC
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