mRNA_P-littoralis_Contig175.39.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: D7FVX7_ECTSI (Proliferating cell nuclear antigen n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX7_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 1.230e-165 Identity = 239/260 (91.92%), Postives = 251/260 (96.54%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
MYEARL+Q SLLKKIIEAVRELVT+ANLDCSESGISMQAMDSSHVSLCALMIRSDGF HYRCDRS+SLGLS G+ISKILKCAGNDDTVTLKAEDTAD+LTIMFES QDRISDFELKLMDID+EHLGIPKTEYNC+IQMPSAEFARIM+DL VIGDTCTIACDKDGVNFSV G++GKGNIMVRNNTSVDKEEDKVTVTMEEPVTL+FALRYL+LF KATPLGP VTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE
Sbjct: 1 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLSLFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 260
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A812RGX4_SYMMI (Proliferating cell nuclear antigen n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RGX4_SYMMI) HSP 1 Score: 379 bits (974), Expect = 1.460e-126 Identity = 177/257 (68.87%), Postives = 223/257 (86.77%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 834
M+EARL+QG++LKKIIEA+RELV +ANLDCS +GISMQAMDSSHVSLCAL++R++ FDHYRCD +SLGL+ N+SKILKCAGNDD VTLK+ D +D+LT++FES QDRISDF++KLM+I++EHLGIP TEY+C +++PS+EF RIM+DL V+GDTCTIAC K+GV FS G+LG GNI++++N SVDK+ED V + M+EPV L FALRYL FTKATPLGP VT+S++PD P++VEYP+ GYVRYYLAPKIDE
Sbjct: 2 MFEARLVQGAILKKIIEAIRELVIDANLDCSSTGISMQAMDSSHVSLCALLMRAEAFDHYRCDVDMSLGLNTPNLSKILKCAGNDDVVTLKSTDQSDTLTLVFESSKQDRISDFDMKLMEIESEHLGIPDTEYSCTVRLPSSEFQRIMRDLTVLGDTCTIACTKEGVRFSASGDLGTGNILLKHNASVDKDEDAVVIDMQEPVELLFALRYLNTFTKATPLGPTVTLSLSPDLPILVEYPVGDLGYVRYYLAPKIDE 258
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A835ZEE1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE1_9STRA) HSP 1 Score: 374 bits (960), Expect = 1.900e-124 Identity = 179/260 (68.85%), Postives = 222/260 (85.38%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
M+EA+L + SLLKKI+EA+RELVT+ANLDCSE+GI+MQAMDSSHVSLCAL +RSDGFDHYRCDR++SLGL++ N+SKILKCAGN+D TL+ ED AD+LT+ FES Q+RIS+FELKL+ +D EHLGIP T Y ++MPSAEF RI++DL+VIGDTC+IA KDGV F VEG+LG G+I V+ NT+ +KEE++V V MEEPV L FALRYL F KATPLGP+V +SM+PD PVVVE+PI+T GY+R+YLAPKIDE +E
Sbjct: 1 MFEAKLNEASLLKKIVEAIRELVTDANLDCSEAGITMQAMDSSHVSLCALNLRSDGFDHYRCDRNLSLGLNLANLSKILKCAGNNDVCTLRTEDDADTLTVTFESPKQERISEFELKLIALDAEHLGIPDTNYKAQVRMPSAEFQRIIRDLSVIGDTCSIAVGKDGVRFGVEGDLGSGSISVKQNTAAEKEEERVEVHMEEPVELTFALRYLNFFAKATPLGPIVALSMSPDVPVVVEFPIETVGYLRFYLAPKIDEEEE 260
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7S2DHU7_9STRA (Proliferating cell nuclear antigen n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHU7_9STRA) HSP 1 Score: 372 bits (954), Expect = 2.340e-123 Identity = 177/261 (67.82%), Postives = 221/261 (84.67%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNT-SVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
M+EARLIQG+LLKKI+EAVR+LVT+AN+DC E G+S+QAMDSSHVSLCAL++RSDGFDHYRCDR ISLGL++GN+ KILKC+GNDD VTLK+ED D LTIMFE+ DRISDFE+KLMDID E LGIP+ EY C I+MPS EF R+++DL VIGDTCTI K+G+ FSV G++G GN+M+R S +KEED+V + M+EP L FA+RYL++FTKA+ LGP V +SM+PD P+VVEYPI+TFG+VR+YLAPK+DE D+
Sbjct: 11 MFEARLIQGNLLKKIVEAVRDLVTDANVDCKEQGLSLQAMDSSHVSLCALVLRSDGFDHYRCDRPISLGLNLGNLGKILKCSGNDDVVTLKSEDQGDLLTIMFENPAADRISDFEMKLMDIDAEQLGIPEQEYACNIRMPSGEFQRLIRDLMVIGDTCTIGVTKEGIKFSVSGDIGNGNVMLRATVGSTEKEEDQVVIEMDEPCELTFAMRYLSMFTKASGLGPTVNLSMSPDVPIVVEYPIETFGHVRFYLAPKLDEGDD 271
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7S2UVI1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVI1_9STRA) HSP 1 Score: 369 bits (948), Expect = 1.330e-122 Identity = 173/261 (66.28%), Postives = 226/261 (86.59%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVD-KEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
M+EARLI G L +KII+A+++LVTEAN+ C+E+GIS+QAMDSSHVSLC LM+R+D +DH+RCDR+++LGL+ GN++KILKCAGNDD +T+KAED D L ++FESK+Q RISDFE+KLMDI +EHLGIP TEY C +QMP+AEF RI++DL+VIG+TCTI+C KDGV FSVEG+LG G+I +R+ + D KEE++V +TM+EPV LQFALRYL+ FTKA+PLGP ++ISM+PD PVVVE+PI+ GY++YYLAPKID +E
Sbjct: 1 MFEARLINGGLFRKIIDAIKDLVTEANIHCNENGISLQAMDSSHVSLCVLMLRNDMYDHFRCDRALALGLNTGNVAKILKCAGNDDIITMKAEDEPDVLQMVFESKDQSRISDFEMKLMDIQSEHLGIPDTEYKCTVQMPAAEFTRIVRDLSVIGETCTISCSKDGVKFSVEGDLGTGSITLRSTSDADTKEEERVVITMDEPVELQFALRYLSSFTKASPLGPTMSISMSPDVPVVVEFPIEGDGYIKYYLAPKIDGGEE 261
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A835YRT1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT1_9STRA) HSP 1 Score: 368 bits (945), Expect = 3.510e-122 Identity = 176/260 (67.69%), Postives = 221/260 (85.00%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
M+EA L + SLLKKI++++RELVT+ANLDCS++GI+MQAMDSSHVSLCAL +R+DGFDH+RCDR++SLG+++ N+SKILKCAGN D VTLK+ED AD+L + FES QDRIS+FELKL+ +D EHLGIP T Y I+MPS +F RI++DL VIGDTCTI+ K+GV FSVEG+LG GNI V+ N + +KEE+KV V +EEPV+L FALRYL FTKATPLGP+V +SM+PD P+VVEYPIDT G+VR+YLAPKIDE +E
Sbjct: 1 MFEATLSEASLLKKIVDSIRELVTDANLDCSDAGINMQAMDSSHVSLCALSLRNDGFDHFRCDRNLSLGVNLANLSKILKCAGNTDLVTLKSEDDADTLGVKFESAKQDRISEFELKLIALDAEHLGIPDTNYKAQIRMPSTDFQRIIRDLQVIGDTCTISATKEGVRFSVEGDLGAGNIAVKQNPNAEKEEEKVEVHIEEPVSLTFALRYLNFFTKATPLGPIVALSMSPDVPIVVEYPIDTTGFVRFYLAPKIDEDEE 260
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: W7TJJ6_9STRA (Proliferating cell nuclear antigen n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJJ6_9STRA) HSP 1 Score: 365 bits (937), Expect = 5.470e-121 Identity = 178/258 (68.99%), Postives = 213/258 (82.56%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEE-DKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 834
M+EARL +GSLLKKIIEA+++LV EAN+DCSE G++MQAMD+SHVSLC+L +R GFDHYRCDRSISLGL++ N+ KILKCAGNDD VTLKAED D+LT+MFES NQ+RISDFELKLMDI+ EHLGIP EY C I MPS EF RI++DLAVIG+TC I C K+GV FSV G+LG GN+ VR +++ D +E D+V + MEEPVTL FALRYL FTKATPLG V + M+PD P+VVEYPID G + Y+LAPKIDE
Sbjct: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDE 258
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7R9WGG0_9STRA (Proliferating cell nuclear antigen n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WGG0_9STRA) HSP 1 Score: 364 bits (935), Expect = 6.030e-120 Identity = 175/276 (63.41%), Postives = 220/276 (79.71%), Query Frame = 1
Query: 13 LTNNHPSTHLSTPQESIMYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEAD 840
L NN P H + M+EARL QG + K +IE++++LV +ANL+CSE IS+QAMDSSHVSL A+ +R+ GFDHYRCDR +SLG + N+SKILKC+GNDD +TLKAED DSLT+MFES +QDRI+DFELKLMDID+E LGIP TEY C I+MPS EF RI++D+ V+GDTC I+C K+GV FSV G+LG GN+++RNN + +KEED+V + MEEPV L FALRYL FTKAT LGP V ISM+PD P+VVEYPI++ G ++YYLAPKIDE +
Sbjct: 37 LNNNRPRQHT----RATMFEARLTQGRIFKSLIESIKDLVQDANLECSEDEISIQAMDSSHVSLVAVALRASGFDHYRCDRPLSLGFNSANLSKILKCSGNDDKITLKAEDNGDSLTLMFESGSQDRIADFELKLMDIDSEQLGIPDTEYKCTIKMPSTEFQRIVRDMQVLGDTCVISCTKEGVRFSVSGDLGTGNVLIRNNANAEKEEDQVLIDMEEPVELTFALRYLNFFTKATALGPSVIISMSPDVPIVVEYPIESSGEIKYYLAPKIDENE 308
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: B8BWU2_THAPS (Proliferating cell nuclear antigen n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWU2_THAPS) HSP 1 Score: 359 bits (921), Expect = 1.530e-118 Identity = 170/260 (65.38%), Postives = 214/260 (82.31%), Query Frame = 1
Query: 64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
M+EARL QG + K++IEA+++LV EAN+DC++ IS+QAMD+SHVSL A+ +RS GFDH+RCDR ISLG + N+ KILKCAGNDD +TL+AED DSL ++FES QDRI+DFELKLMDIDNE LGIP TEY C IQMPSAEF RI++DL V+GDTCTI+C K+GV FSV G+LG GN++VR N++ +K+E+KV + M+EPV L FALRYL FTKAT LGP V +SM+P+ PVVVEYPI G+++YYLAPKIDE +E
Sbjct: 1 MFEARLTQGKVFKQLIEALKDLVQEANIDCTDDEISIQAMDNSHVSLVAVSLRSGGFDHFRCDRPISLGFNAANMGKILKCAGNDDVITLRAEDEGDSLALVFESPGQDRIADFELKLMDIDNEQLGIPDTEYKCTIQMPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNVLVRQNSAAEKDEEKVMIEMDEPVELTFALRYLNFFTKATSLGPTVILSMSPEVPVVVEYPIGETGHIKYYLAPKIDEDEE 260
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7S2EL74_TRICV (Proliferating cell nuclear antigen n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL74_TRICV) HSP 1 Score: 360 bits (924), Expect = 3.620e-118 Identity = 173/274 (63.14%), Postives = 220/274 (80.29%), Query Frame = 1
Query: 25 HPSTHLSTPQESIMYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDT--ADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEAD 840
HPS L + + M+EAR+ QG + K++IE++++LV +AN+DC+E +S+QAMDSSHVSL ++ +RS GFDHYRCDR ISLG + N++KILKCAGNDD +TLKAED AD+LT+MFES QDRI+DFELKLMDID+E LGIP T Y C +QMPSAEF RI++DL +GDTC I+C+K+GV FSV G+LG GN++VR+N S DK+E+KV + MEEPV L FALRYL FTKAT LGP V ISM+PD P+VVEYPI+ G ++YYLAPKIDE +
Sbjct: 42 HPSLDLKLNKPTTMFEARINQGRIFKQLIESIKDLVQDANIDCTEDDVSIQAMDSSHVSLVSVTLRSSGFDHYRCDRPISLGFNSANMAKILKCAGNDDEITLKAEDADAADTLTLMFESPKQDRIADFELKLMDIDSEQLGIPDTSYKCTVQMPSAEFQRIIRDLGSLGDTCNISCNKEGVRFSVSGDLGTGNVLVRSNASADKDEEKVLIDMEEPVELTFALRYLNFFTKATALGPQVVISMSPDVPIVVEYPIEGVGDIKYYLAPKIDENE 315 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig175.39.1 >prot_P-littoralis_Contig175.39.1 ID=prot_P-littoralis_Contig175.39.1|Name=mRNA_P-littoralis_Contig175.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=261bp MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALback to top mRNA from alignment at P-littoralis_Contig175:187494..192943- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig175.39.1 ID=mRNA_P-littoralis_Contig175.39.1|Name=mRNA_P-littoralis_Contig175.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5450bp|location=Sequence derived from alignment at P-littoralis_Contig175:187494..192943- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig175:187494..192943- >mRNA_P-littoralis_Contig175.39.1 ID=mRNA_P-littoralis_Contig175.39.1|Name=mRNA_P-littoralis_Contig175.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig175:187494..192943- (Pylaiella littoralis U1_48)back to top |