mRNA_P-littoralis_Contig175.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig175.39.1
Unique NamemRNA_P-littoralis_Contig175.39.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: D7FVX7_ECTSI (Proliferating cell nuclear antigen n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX7_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 1.230e-165
Identity = 239/260 (91.92%), Postives = 251/260 (96.54%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
            MYEARL+Q SLLKKIIEAVRELVT+ANLDCSESGISMQAMDSSHVSLCALMIRSDGF HYRCDRS+SLGLS G+ISKILKCAGNDDTVTLKAEDTAD+LTIMFES  QDRISDFELKLMDID+EHLGIPKTEYNC+IQMPSAEFARIM+DL VIGDTCTIACDKDGVNFSV G++GKGNIMVRNNTSVDKEEDKVTVTMEEPVTL+FALRYL+LF KATPLGP VTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE
Sbjct:    1 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLSLFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 260          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A812RGX4_SYMMI (Proliferating cell nuclear antigen n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RGX4_SYMMI)

HSP 1 Score: 379 bits (974), Expect = 1.460e-126
Identity = 177/257 (68.87%), Postives = 223/257 (86.77%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 834
            M+EARL+QG++LKKIIEA+RELV +ANLDCS +GISMQAMDSSHVSLCAL++R++ FDHYRCD  +SLGL+  N+SKILKCAGNDD VTLK+ D +D+LT++FES  QDRISDF++KLM+I++EHLGIP TEY+C +++PS+EF RIM+DL V+GDTCTIAC K+GV FS  G+LG GNI++++N SVDK+ED V + M+EPV L FALRYL  FTKATPLGP VT+S++PD P++VEYP+   GYVRYYLAPKIDE
Sbjct:    2 MFEARLVQGAILKKIIEAIRELVIDANLDCSSTGISMQAMDSSHVSLCALLMRAEAFDHYRCDVDMSLGLNTPNLSKILKCAGNDDVVTLKSTDQSDTLTLVFESSKQDRISDFDMKLMEIESEHLGIPDTEYSCTVRLPSSEFQRIMRDLTVLGDTCTIACTKEGVRFSASGDLGTGNILLKHNASVDKDEDAVVIDMQEPVELLFALRYLNTFTKATPLGPTVTLSLSPDLPILVEYPVGDLGYVRYYLAPKIDE 258          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A835ZEE1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE1_9STRA)

HSP 1 Score: 374 bits (960), Expect = 1.900e-124
Identity = 179/260 (68.85%), Postives = 222/260 (85.38%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
            M+EA+L + SLLKKI+EA+RELVT+ANLDCSE+GI+MQAMDSSHVSLCAL +RSDGFDHYRCDR++SLGL++ N+SKILKCAGN+D  TL+ ED AD+LT+ FES  Q+RIS+FELKL+ +D EHLGIP T Y   ++MPSAEF RI++DL+VIGDTC+IA  KDGV F VEG+LG G+I V+ NT+ +KEE++V V MEEPV L FALRYL  F KATPLGP+V +SM+PD PVVVE+PI+T GY+R+YLAPKIDE +E
Sbjct:    1 MFEAKLNEASLLKKIVEAIRELVTDANLDCSEAGITMQAMDSSHVSLCALNLRSDGFDHYRCDRNLSLGLNLANLSKILKCAGNNDVCTLRTEDDADTLTVTFESPKQERISEFELKLIALDAEHLGIPDTNYKAQVRMPSAEFQRIIRDLSVIGDTCSIAVGKDGVRFGVEGDLGSGSISVKQNTAAEKEEERVEVHMEEPVELTFALRYLNFFAKATPLGPIVALSMSPDVPVVVEFPIETVGYLRFYLAPKIDEEEE 260          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7S2DHU7_9STRA (Proliferating cell nuclear antigen n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHU7_9STRA)

HSP 1 Score: 372 bits (954), Expect = 2.340e-123
Identity = 177/261 (67.82%), Postives = 221/261 (84.67%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNT-SVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
            M+EARLIQG+LLKKI+EAVR+LVT+AN+DC E G+S+QAMDSSHVSLCAL++RSDGFDHYRCDR ISLGL++GN+ KILKC+GNDD VTLK+ED  D LTIMFE+   DRISDFE+KLMDID E LGIP+ EY C I+MPS EF R+++DL VIGDTCTI   K+G+ FSV G++G GN+M+R    S +KEED+V + M+EP  L FA+RYL++FTKA+ LGP V +SM+PD P+VVEYPI+TFG+VR+YLAPK+DE D+
Sbjct:   11 MFEARLIQGNLLKKIVEAVRDLVTDANVDCKEQGLSLQAMDSSHVSLCALVLRSDGFDHYRCDRPISLGLNLGNLGKILKCSGNDDVVTLKSEDQGDLLTIMFENPAADRISDFEMKLMDIDAEQLGIPEQEYACNIRMPSGEFQRLIRDLMVIGDTCTIGVTKEGIKFSVSGDIGNGNVMLRATVGSTEKEEDQVVIEMDEPCELTFAMRYLSMFTKASGLGPTVNLSMSPDVPIVVEYPIETFGHVRFYLAPKLDEGDD 271          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7S2UVI1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVI1_9STRA)

HSP 1 Score: 369 bits (948), Expect = 1.330e-122
Identity = 173/261 (66.28%), Postives = 226/261 (86.59%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVD-KEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
            M+EARLI G L +KII+A+++LVTEAN+ C+E+GIS+QAMDSSHVSLC LM+R+D +DH+RCDR+++LGL+ GN++KILKCAGNDD +T+KAED  D L ++FESK+Q RISDFE+KLMDI +EHLGIP TEY C +QMP+AEF RI++DL+VIG+TCTI+C KDGV FSVEG+LG G+I +R+ +  D KEE++V +TM+EPV LQFALRYL+ FTKA+PLGP ++ISM+PD PVVVE+PI+  GY++YYLAPKID  +E
Sbjct:    1 MFEARLINGGLFRKIIDAIKDLVTEANIHCNENGISLQAMDSSHVSLCVLMLRNDMYDHFRCDRALALGLNTGNVAKILKCAGNDDIITMKAEDEPDVLQMVFESKDQSRISDFEMKLMDIQSEHLGIPDTEYKCTVQMPAAEFTRIVRDLSVIGETCTISCSKDGVKFSVEGDLGTGSITLRSTSDADTKEEERVVITMDEPVELQFALRYLSSFTKASPLGPTMSISMSPDVPVVVEFPIEGDGYIKYYLAPKIDGGEE 261          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A835YRT1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT1_9STRA)

HSP 1 Score: 368 bits (945), Expect = 3.510e-122
Identity = 176/260 (67.69%), Postives = 221/260 (85.00%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
            M+EA L + SLLKKI++++RELVT+ANLDCS++GI+MQAMDSSHVSLCAL +R+DGFDH+RCDR++SLG+++ N+SKILKCAGN D VTLK+ED AD+L + FES  QDRIS+FELKL+ +D EHLGIP T Y   I+MPS +F RI++DL VIGDTCTI+  K+GV FSVEG+LG GNI V+ N + +KEE+KV V +EEPV+L FALRYL  FTKATPLGP+V +SM+PD P+VVEYPIDT G+VR+YLAPKIDE +E
Sbjct:    1 MFEATLSEASLLKKIVDSIRELVTDANLDCSDAGINMQAMDSSHVSLCALSLRNDGFDHFRCDRNLSLGVNLANLSKILKCAGNTDLVTLKSEDDADTLGVKFESAKQDRISEFELKLIALDAEHLGIPDTNYKAQIRMPSTDFQRIIRDLQVIGDTCTISATKEGVRFSVEGDLGAGNIAVKQNPNAEKEEEKVEVHIEEPVSLTFALRYLNFFTKATPLGPIVALSMSPDVPIVVEYPIDTTGFVRFYLAPKIDEDEE 260          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: W7TJJ6_9STRA (Proliferating cell nuclear antigen n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJJ6_9STRA)

HSP 1 Score: 365 bits (937), Expect = 5.470e-121
Identity = 178/258 (68.99%), Postives = 213/258 (82.56%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEE-DKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 834
            M+EARL +GSLLKKIIEA+++LV EAN+DCSE G++MQAMD+SHVSLC+L +R  GFDHYRCDRSISLGL++ N+ KILKCAGNDD VTLKAED  D+LT+MFES NQ+RISDFELKLMDI+ EHLGIP  EY C I MPS EF RI++DLAVIG+TC I C K+GV FSV G+LG GN+ VR +++ D +E D+V + MEEPVTL FALRYL  FTKATPLG  V + M+PD P+VVEYPID  G + Y+LAPKIDE
Sbjct:    1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDE 258          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7R9WGG0_9STRA (Proliferating cell nuclear antigen n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WGG0_9STRA)

HSP 1 Score: 364 bits (935), Expect = 6.030e-120
Identity = 175/276 (63.41%), Postives = 220/276 (79.71%), Query Frame = 1
Query:   13 LTNNHPSTHLSTPQESIMYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEAD 840
            L NN P  H      + M+EARL QG + K +IE++++LV +ANL+CSE  IS+QAMDSSHVSL A+ +R+ GFDHYRCDR +SLG +  N+SKILKC+GNDD +TLKAED  DSLT+MFES +QDRI+DFELKLMDID+E LGIP TEY C I+MPS EF RI++D+ V+GDTC I+C K+GV FSV G+LG GN+++RNN + +KEED+V + MEEPV L FALRYL  FTKAT LGP V ISM+PD P+VVEYPI++ G ++YYLAPKIDE +
Sbjct:   37 LNNNRPRQHT----RATMFEARLTQGRIFKSLIESIKDLVQDANLECSEDEISIQAMDSSHVSLVAVALRASGFDHYRCDRPLSLGFNSANLSKILKCSGNDDKITLKAEDNGDSLTLMFESGSQDRIADFELKLMDIDSEQLGIPDTEYKCTIKMPSTEFQRIVRDMQVLGDTCVISCTKEGVRFSVSGDLGTGNVLIRNNANAEKEEDQVLIDMEEPVELTFALRYLNFFTKATALGPSVIISMSPDVPIVVEYPIESSGEIKYYLAPKIDENE 308          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: B8BWU2_THAPS (Proliferating cell nuclear antigen n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWU2_THAPS)

HSP 1 Score: 359 bits (921), Expect = 1.530e-118
Identity = 170/260 (65.38%), Postives = 214/260 (82.31%), Query Frame = 1
Query:   64 MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 843
            M+EARL QG + K++IEA+++LV EAN+DC++  IS+QAMD+SHVSL A+ +RS GFDH+RCDR ISLG +  N+ KILKCAGNDD +TL+AED  DSL ++FES  QDRI+DFELKLMDIDNE LGIP TEY C IQMPSAEF RI++DL V+GDTCTI+C K+GV FSV G+LG GN++VR N++ +K+E+KV + M+EPV L FALRYL  FTKAT LGP V +SM+P+ PVVVEYPI   G+++YYLAPKIDE +E
Sbjct:    1 MFEARLTQGKVFKQLIEALKDLVQEANIDCTDDEISIQAMDNSHVSLVAVSLRSGGFDHFRCDRPISLGFNAANMGKILKCAGNDDVITLRAEDEGDSLALVFESPGQDRIADFELKLMDIDNEQLGIPDTEYKCTIQMPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNVLVRQNSAAEKDEEKVMIEMDEPVELTFALRYLNFFTKATSLGPTVILSMSPEVPVVVEYPIGETGHIKYYLAPKIDEDEE 260          
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Match: A0A7S2EL74_TRICV (Proliferating cell nuclear antigen n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL74_TRICV)

HSP 1 Score: 360 bits (924), Expect = 3.620e-118
Identity = 173/274 (63.14%), Postives = 220/274 (80.29%), Query Frame = 1
Query:   25 HPSTHLSTPQESIMYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCALMIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDT--ADSLTIMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKDLAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEAD 840
            HPS  L   + + M+EAR+ QG + K++IE++++LV +AN+DC+E  +S+QAMDSSHVSL ++ +RS GFDHYRCDR ISLG +  N++KILKCAGNDD +TLKAED   AD+LT+MFES  QDRI+DFELKLMDID+E LGIP T Y C +QMPSAEF RI++DL  +GDTC I+C+K+GV FSV G+LG GN++VR+N S DK+E+KV + MEEPV L FALRYL  FTKAT LGP V ISM+PD P+VVEYPI+  G ++YYLAPKIDE +
Sbjct:   42 HPSLDLKLNKPTTMFEARINQGRIFKQLIESIKDLVQDANIDCTEDDVSIQAMDSSHVSLVSVTLRSSGFDHYRCDRPISLGFNSANMAKILKCAGNDDEITLKAEDADAADTLTLMFESPKQDRIADFELKLMDIDSEQLGIPDTSYKCTVQMPSAEFQRIIRDLGSLGDTCNISCNKEGVRFSVSGDLGTGNVLVRSNASADKDEEKVLIDMEEPVELTFALRYLNFFTKATALGPQVVISMSPDVPIVVEYPIEGVGDIKYYLAPKIDENE 315          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig175.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX7_ECTSI1.230e-16591.92Proliferating cell nuclear antigen n=2 Tax=Ectocar... [more]
A0A812RGX4_SYMMI1.460e-12668.87Proliferating cell nuclear antigen n=1 Tax=Symbiod... [more]
A0A835ZEE1_9STRA1.900e-12468.85Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A7S2DHU7_9STRA2.340e-12367.82Proliferating cell nuclear antigen n=1 Tax=Dictyoc... [more]
A0A7S2UVI1_9STRA1.330e-12266.28Proliferating cell nuclear antigen n=1 Tax=Fibroca... [more]
A0A835YRT1_9STRA3.510e-12267.69Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
W7TJJ6_9STRA5.470e-12168.99Proliferating cell nuclear antigen n=2 Tax=Monodop... [more]
A0A7R9WGG0_9STRA6.030e-12063.41Proliferating cell nuclear antigen n=2 Tax=Odontel... [more]
B8BWU2_THAPS1.530e-11865.38Proliferating cell nuclear antigen n=1 Tax=Thalass... [more]
A0A7S2EL74_TRICV3.620e-11863.14Proliferating cell nuclear antigen n=1 Tax=Trieres... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig175contigP-littoralis_Contig175:187494..192943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVX7
Preferred namePCNA
PFAMsPCNA_C,PCNA_N
Model size1617
Max annot lvl2759|Eukaryota
KEGG koko:K04802
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000302,GO:0000307,GO:0000700,GO:0000701,GO:0000723,GO:0000731,GO:0001101,GO:0001889,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006283,GO:0006284,GO:0006287,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006959,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007507,GO:0007584,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0014823,GO:0015630,GO:0016043,GO:0016070,GO:0016567,GO:0016604,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0019985,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022616,GO:0023052,GO:0030154,GO:0030234,GO:0030330,GO:0030331,GO:0030337,GO:0030703,GO:0030707,GO:0030855,GO:0030894,GO:0030971,GO:0030983,GO:0031099,GO:0031100,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031960,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032135,GO:0032139,GO:0032200,GO:0032201,GO:0032355,GO:0032404,GO:0032405,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0033993,GO:0034399,GO:0034599,GO:0034614,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035035,GO:0035257,GO:0035258,GO:0035556,GO:0035690,GO:0036211,GO:0042221,GO:0042276,GO:0042493,GO:0042542,GO:0042592,GO:0042698,GO:0042769,GO:0042770,GO:0042802,GO:0043085,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043596,GO:0043626,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044796,GO:0044819,GO:0044843,GO:0044849,GO:0044877,GO:0045005,GO:0045739,GO:0045740,GO:0045786,GO:0045787,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046686,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051336,GO:0051345,GO:0051384,GO:0051427,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060429,GO:0061008,GO:0061695,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070206,GO:0070207,GO:0070301,GO:0070557,GO:0070647,GO:0070887,GO:0070987,GO:0071156,GO:0071158,GO:0071214,GO:0071236,GO:0071466,GO:0071478,GO:0071482,GO:0071548,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090304,GO:0090305,GO:0097159,GO:0097237,GO:0097327,GO:0097421,GO:0098772,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901698,GO:1901700,GO:1901701,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902065,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902554,GO:1902679,GO:1902806,GO:1902807,GO:1902850,GO:1902911,GO:1902990,GO:1903047,GO:1903506,GO:1903507,GO:1990234,GO:1990782,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001020,GO:2001022,GO:2001141
Exons4
Evalue4.06e-171
EggNOG OGsCOG0592@1|root,KOG1636@2759|Eukaryota
Ec32 ortholog descriptionPCNA
Ec32 orthologEc-01_002530.1
DescriptionDNA polymerase processivity factor activity
Cds size783
COG categoryL
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig175.39.1prot_P-littoralis_Contig175.39.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig175 188265..192880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789843.0248015-UTR-P-littoralis_Contig175:187493..1882641680789843.0248015-UTR-P-littoralis_Contig175:187493..188264Pylaiella littoralis U1_48UTRP-littoralis_Contig175 187494..188264 -
1680789843.0817091-UTR-P-littoralis_Contig175:192880..1929431680789843.0817091-UTR-P-littoralis_Contig175:192880..192943Pylaiella littoralis U1_48UTRP-littoralis_Contig175 192881..192943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789843.036778-CDS-P-littoralis_Contig175:188264..1884711680789843.036778-CDS-P-littoralis_Contig175:188264..188471Pylaiella littoralis U1_48CDSP-littoralis_Contig175 188265..188471 -
1680789843.048381-CDS-P-littoralis_Contig175:189339..1895011680789843.048381-CDS-P-littoralis_Contig175:189339..189501Pylaiella littoralis U1_48CDSP-littoralis_Contig175 189340..189501 -
1680789843.0583575-CDS-P-littoralis_Contig175:190629..1907241680789843.0583575-CDS-P-littoralis_Contig175:190629..190724Pylaiella littoralis U1_48CDSP-littoralis_Contig175 190630..190724 -
1680789843.0712914-CDS-P-littoralis_Contig175:192561..1928801680789843.0712914-CDS-P-littoralis_Contig175:192561..192880Pylaiella littoralis U1_48CDSP-littoralis_Contig175 192562..192880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig175.39.1

>prot_P-littoralis_Contig175.39.1 ID=prot_P-littoralis_Contig175.39.1|Name=mRNA_P-littoralis_Contig175.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=261bp
MYEARLIQGSLLKKIIEAVRELVTEANLDCSESGISMQAMDSSHVSLCAL
MIRSDGFDHYRCDRSISLGLSMGNISKILKCAGNDDTVTLKAEDTADSLT
IMFESKNQDRISDFELKLMDIDNEHLGIPKTEYNCMIQMPSAEFARIMKD
LAVIGDTCTIACDKDGVNFSVEGELGKGNIMVRNNTSVDKEEDKVTVTME
EPVTLQFALRYLTLFTKATPLGPVVTISMTPDNPVVVEYPIDTFGYVRYY
LAPKIDEADE*
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mRNA from alignment at P-littoralis_Contig175:187494..192943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig175.39.1 ID=mRNA_P-littoralis_Contig175.39.1|Name=mRNA_P-littoralis_Contig175.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5450bp|location=Sequence derived from alignment at P-littoralis_Contig175:187494..192943- (Pylaiella littoralis U1_48)
AGCCCTCCCAACCTCACCAACAATCACCCATCTACCCATCTATCTACACC TCAAGAATCAATCATGTACGAAGCAAGGTTGATCCAGGGGTCACTCCTCA AGAAGATCATCGAGGCCGTGCGGGAGCTGGTGACTGAAGCGAACTTGGAC TGCTCCGAGTCGGGCATCTCGATGCAGGCGATGGACTCCAGCCACGTCTC CCTGTGCGCATTGATGATCCGTAGCGATGGGTTCGACCACTACCGATGCG ACCGCAGTATCTCGCTCGGCCTGTCGATGGGTAACATCTCCAAGATTCTT AAGTGCGCCGGCAACGACGACACGGTCACCCTCAAGGCGGAGGACACCGC GGATTCCCTCACCATTATGTTCGAGAGCAAAAGTAAGAAGGGAGATGGAC CAGCCCATGGGCAAACACAGCAGAAGACAAGAGAAAGAGAGGGAGAGAGA GCTCCGTTGACGTGGACGTCCCCAAGCAAGAAAACAGAGAGTGGGCAGGG GGGATGTGTAGTATATAGAGCAAGGTAGGTTTGCTGTTTTTATGCCCTTT GCCGTTGGGCTTGGTTTGGCGGTCCTAGCGCACTCTGTATCAATTTACCA CACTTTTTGAATTTATCGCAATCGATTCGAACTCATTATCTCCAACAGTA CAGCTCTATACTACCCAGCTGTACGAGCTGGTGCACACAACAACTCAATT CGGTCGTTTTTTGGCGCCCACCCACCAGAAAGGCATGATTCGTTTGTGCC AACCACGCTTGCTTGCTGTAACAGCGCACGGTAGGTAGAGGAACCACCAT CGTCGTTCCACATTTCTGCTGCTTGTCGGTCGCGTGGAACAGCCGGGTGC ATGCGGGACATTCGATCCGGGTGGGGCTGTGGGTCGAAAAAACTCCCGAA ATTCAAATGTTGGCTGTCGTAGCTCTTCGTCCACCTTGAGACAGCCACAA ACAGACCCAACAGAACCTGCAGCAGTAGCAGCTGCGCTGCTGCCCGGGGG CTACCCTGCTGCCCGGGGGTGCCTTCAATGTTGTGCTTTCGTGTCACCAG CTTTGGCTTTCGGTCAAGTGTATGTTTGATTGGCCGTCTGTCTCTCTTGA TGCCTGGAAGGCTACTACTCTATCCCCGATGACCCAATCGAATACCAGGT ATATAATATAATACCGTAATCATGCGAGTCATCGCACCCCCGTGTTAGCT TTTTTGCATTCCGTATTGCTCCACAACCAGGAGAGTACCACTGCCGAAAA GGGTGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTATGACGGGTCGTTT GGTGTTCGCACTCTCCTGGTTATGGAGCAATACGGAATGCAAAAAAGCTA ACACGGGGGTTCGATGACTCGCATGATTACGGTACTCGAGTACCAGGCAT GGTGCATGACTCGTCTGATACTCACAGAAAGAAGGCAGCAGCATTGTTCT GTGCTTCGAGTTTATCATCAATACCAGGCATCTTTTCATCAGGAGCCTGG CCGTTAATTTTACACCTGGTACGACTTGCCTCTCGTTGTGCACAGTCACC GCTCTCTTCAGCGAGCCCGTTGGCGAAAGCCCCCTCATCCATCTGTCGTA GATGCACAGCAGTCGACAGCAGTAGCCGAAAGTTGGTTTGGTATGGCTGC CCCACCTCTAAGCGAGCAAAATCTCTTGACGTCAAACCGCCTCAACAAGA AAGAAGAGTGTGCCTTTTGAAACACTCTGGATTTTTTCAACATTTGTTTC GTGTTCTGCTCTACTACCCATATCTGTGCAACAAGCATGTTTGTCGAAAT CTAGCCCCGATAAGCTGATGCAAGCTTCATTTACAGCAGCCCTCACAGAA GTTTGTAGTTTAGGGTTGCCTCACAGAACAACTCCTCCGCCGTCCATCTT GCTCGAGAAATCCATCACTGCTGCAAAATTTCAAAATTTTAAATTTTAAA TTTTAAATTTTAAACTTTTTGGGCCCATTTGGGCCCGCATTTGGCACCCC TTGGGGTGTCTTCACCTTCTGCACTGTGAAGCGCTGCCGCTTCACAAAAG AACCACCGCCTGTTGTTTTTTTGTACGACTCCGAGCATGTTGCCTGTGTG TGATAGAGCAGTACGTCAGCGTTGACTCCGGTTTCCGTTGAACAGAGAGC AGAGAGGCCGGCGTTCTTGCTGACACGTTTGTATGCTTTGTTGCCCCCAA CTTCCCCGCCTCGTCGCAGACCAAGACCGTATCTCTGACTTTGAGCTTAA GTTGATGGATATCGACAACGAACACCTCGGGATCCCAAAGACGGAGTACA ACTGCATGATCCAGGTGAGACGGAACGAAAGTCAACGTTTACAGCAGCTG TGCATCACGAGGGTACAAATTACGACTCGTGTTGCCCCATGCATCTTTCG GAAGACAACACACCCACCTACGTCTGTAAGGCAGTACTTCGAAGTATCAT GTACGTGTACCCTCGGCGCCCCCGGACGGGGGGCTTGCACAAACATGCCG CAGGGCCCTCCCCTCAGGGTGTTGAGACGGTTTCAACCATACATTGATTT TGGCTGCAACGATGAGGCGATCGCTGTCCCTGCTTGCTCGGTATGCACGT ACACATGCGTATCATACGCATACTACTTGGAATATGGAATATGATGATGC GGGAGATGTAAACAGCAGTATGGCAGCACGTCCCTGGGCGGCTCGCCAAA GCTCGAATTCTCGACGGCAAAAACATCTGCACTGCCGGAATGAGGCAGCG CCGTTTCGAATGTCTCGTGTGTGAGAGCTTTCCGGAAACGTTTCGTTCTG ATTGGTGCTGGCATCCTCTTGCGTTACCCAGCCATCAATCGAGCTTTGGG AATCAACCCACGGGGTATGTTATCTCCCGTATGTCGCATGCGCTTAGTAC TGCGTCGTACTGCGTCGTACTTGTCTAATTTAAAGACCAAGGGTATGCAT CGTTTTTCATGATGCGAAACGATTTCATCTTTTTTGCGTTAGGGTGCTTG AAGTCAACACGCGAGCAATTTGTCGTTGCTCTCTGCACAAGATGCTTTTA CTATGTACGTAGATTGACCAAGCTAGAGTGAGGGACACGGAGCTACACGA AGCTGGAACACATCATCGTATCCAACACATTTACGTCACCCCCAGTGACC CCGTAGATCGATATCTGCGCCAGGTACGATGCCTCCAAAACATTATTTTT CTATGATTTGTTCCCATGTAGTGAGGCAGCCGCAGCGGTGAAAAGAGAAG AATGGAAGTCGATTCGTGTTGTGAAAAGCGCGCGGCTTAAGACGTCGGCC TGCAAAGGTACCTGGCACGTATCAACATGCGTGGACTTCAGCACAGCAAG TACAATGTACAGGCCAAAGTTGCACTCCTGTTGTCTCTCCTTTTTTATTT GTCATTCCTCCCCTCTATTTGTTATCTAATGTCATTCCACAGATGCCTTC GGCGGAGTTCGCACGGATCATGAAGGACTTGGCGGTAATCGGGGATACTT GCACCATCGCGTGCGATAAGGACGGGGTAAACTTTTCCGTGGAGGGGGAA CTCGGGAAGGGCAACATCATGGTCCGAAACAACACCTCCGTCGATAAGGA AGAGGTCAGTCATTCAAATGGAAACCAATGAATCCACACGAGCACTGCTG TCTGAATGACGAGGAGAAATCAGTCAGATCAAATCACGGGACGGCATGAT GGTAGTTTGTGTTTTTGAAAATATTTTGAACATGGTCGTGTGTACTCCAA CACATGATGTACCGTGTGTCACGCAAGGCGACCGCCAAATTCTCTTGTTG AGCCTGATGACTTCAGGGGAGCTGGAACGGTGCTTCATCTCCGATGAGTC ACAAACAAATATATGCATTTATCTGTGTTCGTTGCTAGTCGGCTGTAGAT CCTCGTCTAAAGAGGACGAACACATTGATTTGTTCGTGAACAGATTTCAA AGGAAACGTGACTCCAGAGGATTTGTCTTGGAACCCCTGACAAGAGAGAG TTTCCATGCAGTCCGCCTGGGGAGTGATGAAAGCGATTGAGGCGGAGAAT TAGTCTGCTCTCACCCTCGGAGTTCCCGCCGTCTCTGCTAAGTGAAACCC GGAATTTTGACGTACTTGAAAGAAATATCGCCGCAAAACAACTACAGACT GGGGCACCGTTGCCCTAGATATAGAAGGAAAATTTCATGGTGACCTCAGA GTGACGAGTGCCCGACTTCCGACTCTGCCGCCTCACTTTCACTCATTCAA GGAATACCCACAGTTTGAACGCGTTTTGCTGATTTGTTTCGCGCAATCAC AACACACCCGTCACGCAACCAATTCCCTCAGTGCACGTATATCTGCTTTG CTCGCGCAATCATAACACACAGCCGACAGTTTTTTGCACTTATTTTACGC ATTGTTCACTCAGTCACACTTACCTGTGCAACAACCACGTTTGTCGGGTG TTTTTCATTTTTTTTTCTGTAGGACAAGGTAACGGTTACAATGGAGGAGC CCGTCACGCTCCAGTTCGCCCTGCGGTACCTTACTCTCTTCACAAAGGCG ACCCCGTTAGGTCCCGTGGTGACCATCTCCATGACCCCAGACAACCCTGT GGTGGTGGAGTACCCTATCGACACCTTCGGCTACGTACGATACTACCTGG CACCCAAGATCGACGAGGCTGACGAATAGAGAAACCCTTTGTGTTGTAAT TTTGACGAAAAAGTAGGAGAACCAAAAAACATCCGGTAGTTGTATATCAC TTCGAAGAATTTCACAAATTATCAAAATAGTCCATCGTGTAGAAAACAAG AGTTTCACAGCAACGGAGGAGCGAAAATGAGACGTCTGGTGCGAACGAGG CTGTGGCGCGAGCAGAGGCGTCGCGATGTTGGTGCGCTTTATCCTACCGC ACCGTGGGACAGCTTGCTTGTCGACAAAGGCGTTGTAAAGTATTTGACTG GTCGTCTTTTTTTTTATTGATGAATGTGATTGTAGATACGATGTCTTTCT CTTGTCTTTTTATCGTCATGACTTTGTATCAAATCATTCAAAAAATATTT CGAAGAATATTTTTCTGTTCTTTTAGGTCCCCCGCGGTAAAAATGTGTGC GACACGATTGGTATGTGACCTTCAGGAGCAGCTACTCACCATGCACCAGC ATTGATTCCGTCCGACAATTTGTGTCTTTGCCATGGGTATGCGTGTGTTG CTTAACTTCGTACTTCGAAGTATTTGTTATGCCAAACCGGAGTATTTTCT CGGAGTGTGGCTGGCACTCGGACGTGTTGTACCTGGTTTACTTTTAGTAC AGTATTGAGTTGGGAGATACGGCCGAAGGACGAAGCAAAAACACGAATAT TAATACCTATTTATGAGCACACCGGTCCCTCCGGTGGTTCTGTTGGTAAC CCGCGCAACCTTTTCACGTTCACGCGTGAGTTCGAACCTCCAGTGCAGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig175:187494..192943-

>mRNA_P-littoralis_Contig175.39.1 ID=mRNA_P-littoralis_Contig175.39.1|Name=mRNA_P-littoralis_Contig175.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=783bp|location=Sequence derived from alignment at P-littoralis_Contig175:187494..192943- (Pylaiella littoralis U1_48)
ATGTACGAAGCAAGGTTGATCCAGGGGTCACTCCTCAAGAAGATCATCGA
GGCCGTGCGGGAGCTGGTGACTGAAGCGAACTTGGACTGCTCCGAGTCGG
GCATCTCGATGCAGGCGATGGACTCCAGCCACGTCTCCCTGTGCGCATTG
ATGATCCGTAGCGATGGGTTCGACCACTACCGATGCGACCGCAGTATCTC
GCTCGGCCTGTCGATGGGTAACATCTCCAAGATTCTTAAGTGCGCCGGCA
ACGACGACACGGTCACCCTCAAGGCGGAGGACACCGCGGATTCCCTCACC
ATTATGTTCGAGAGCAAAAACCAAGACCGTATCTCTGACTTTGAGCTTAA
GTTGATGGATATCGACAACGAACACCTCGGGATCCCAAAGACGGAGTACA
ACTGCATGATCCAGATGCCTTCGGCGGAGTTCGCACGGATCATGAAGGAC
TTGGCGGTAATCGGGGATACTTGCACCATCGCGTGCGATAAGGACGGGGT
AAACTTTTCCGTGGAGGGGGAACTCGGGAAGGGCAACATCATGGTCCGAA
ACAACACCTCCGTCGATAAGGAAGAGGACAAGGTAACGGTTACAATGGAG
GAGCCCGTCACGCTCCAGTTCGCCCTGCGGTACCTTACTCTCTTCACAAA
GGCGACCCCGTTAGGTCCCGTGGTGACCATCTCCATGACCCCAGACAACC
CTGTGGTGGTGGAGTACCCTATCGACACCTTCGGCTACGTACGATACTAC
CTGGCACCCAAGATCGACGAGGCTGACGAATAG
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