mRNA_P-littoralis_Contig174.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig174.64.1
Unique NamemRNA_P-littoralis_Contig174.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 5.440e-80
Identity = 130/154 (84.42%), Postives = 137/154 (88.96%), Query Frame = 1
Query:  106 TMNAV*HTEE*YFPCSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 567
            T++    T E    C  +V  G + +WRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGIL+MRFRILKLAMTYQKQ RLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQ+TSGHNLDSSSVGTKDLNDKPQVEAAHA LKRKLTT
Sbjct:  281 TVHKKDGTTETLKGCYLIVDNG-YHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQNTSGHNLDSSSVGTKDLNDKPQVEAAHAELKRKLTT 433          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.320e-53
Identity = 90/130 (69.23%), Postives = 102/130 (78.46%), Query Frame = 1
Query:  184 WRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 567
            W++LIEPSKYPLSE DLLF KRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTCCILHNMLHT DGM  L E+ NW+ SA +  T  +    D  SVGTKD+ND+PQ+E  H V KR+LTT
Sbjct:   18 WQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWISSAGVGATLATEPEADCGSVGTKDVNDQPQLEIGHTVRKRQLTT 147          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.230e-53
Identity = 97/142 (68.31%), Postives = 109/142 (76.76%), Query Frame = 1
Query:  148 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTS--GHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 567
            C  LV  G + +W++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ R RIL LAM +Q Q R+D VFFTCCILHNMLHT DGM  L E+ NWV SA +  TS      DS SVGTKD+N +PQVEA HAV KR+LTT
Sbjct:  126 CYVLVDNG-YHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGTKDVNGRPQVEAGHAVRKRQLTT 266          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 7.010e-52
Identity = 91/133 (68.42%), Postives = 104/133 (78.20%), Query Frame = 1
Query:  175 FMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 567
            + +W++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTCCILHNMLHT DGM  L E+ NWV SA +  T  +    D  S GTKD+ND+PQ+E  H V KR+LTT
Sbjct:  179 YHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGTKDVNDQPQLEIGHTVRKRQLTT 311          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 7.450e-50
Identity = 95/142 (66.90%), Postives = 108/142 (76.06%), Query Frame = 1
Query:  148 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHT--SGHNLDSSSVGTKDLNDKPQVEAAHAVLKRKLTT 567
            C  LV  G + +W++LIEPSKYPLSE DLLFSKRLESVRKDVECFFGIL+ RFRILKLAM YQ Q R+D VFFTC ILHNMLHT DGM  L E+ NWV SA +  T  +    D  SVGTKD+ND+PQ+E  H V KR+LTT
Sbjct:  281 CYLLVDNG-YHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGATLTTEPEADCGSVGTKDVNDQPQLEIEHTVRKRQLTT 421          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 7.910e-42
Identity = 76/117 (64.96%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  196 IEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQH--TSGHNLDSSSVGTKDLNDKPQVEAAH 540
            +EP+KYPLSE D+LFSKRLESVRKDVECFFGIL+ RFRILKL M Y +Q R+D VFFTCCILHNMLH  DGM  L E+  WV  A       +    DSS VG KD NDK QVE  H
Sbjct:    1 MEPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLHIFDGMDQLVENTLWVSGAGAGTGVATEQEADSSFVGAKDTNDKEQVEKGH 117          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 4.120e-39
Identity = 80/133 (60.15%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  175 FMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHNL--DSSSVGTKDLNDKPQVEAAHAVLKRKLTT 567
            + +W++LIEPSKYPLSE DLLFSKRL+SVR+D     GIL+ RFRILKLAM YQ Q R+D VFFTCCI+HNMLHT DGM  L E+   V SA +  T    L  D  SVG +D+ND+PQ+E    V KR+LTT
Sbjct:  310 YHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMDQLVENTIRVSSAGVGATLATELEADCGSVGRRDVNDQPQLEIGRTVRKRQLTT 442          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.630e-39
Identity = 78/126 (61.90%), Postives = 92/126 (73.02%), Query Frame = 1
Query:  148 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQH--TSGHNLDSSSVGTKDLNDK 519
            C  LV  G + +W++L+EP+KYPLSE D+LFSKRLESVRKDVECFFGIL+  FRI K+AM Y +Q R+D VFFTCCILHNMLHT DGM  L E+  WV SA       +    DSS+VG KD NDK
Sbjct:  266 CYLLVDNG-YHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGAGTGVATEQEADSSTVGAKDTNDK 390          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.800e-37
Identity = 72/121 (59.50%), Postives = 87/121 (71.90%), Query Frame = 1
Query:  148 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHN--LDSSSVGTK 504
            C  LV  G + +W  LI PSKYP+ + DL FSKRLESVRKDVECFFGI++  FRILKL++ Y KQ  +D VFFTCCILHNMLH++D    +EE+ NW G+A L +   HN  LD SSVG K
Sbjct:   83 CYLLVDNG-YHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAK 202          
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.270e-36
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  148 CSPLVCFGPFMQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAMTYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHN--LDSSSVGTK 504
            C  LV  G + +W  LI PSKYP+ + DL FSKRLESVRKDVECFFGI++ RFRILKL++ Y KQ  +D VFFTCCILHNMLH++D    +EE+ NW G+A L +   HN  LD SSVG K
Sbjct:  324 CYLLVDNG-YHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAK 443          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig174.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE5.440e-8084.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE2.320e-5369.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI3.230e-5368.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUX7_9PHAE7.010e-5268.42DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNX4_9PHAE7.450e-5066.90DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JXJ4_9PHAE7.910e-4264.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE4.120e-3960.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE4.630e-3961.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE2.800e-3759.50DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE3.270e-3660.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig174contigP-littoralis_Contig174:257798..258364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size569
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.23e-54
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size390
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.699754-CDS-P-littoralis_Contig174:257797..2581871680789838.699754-CDS-P-littoralis_Contig174:257797..258187Pylaiella littoralis U1_48CDSP-littoralis_Contig174 257798..258187 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789838.7183216-UTR-P-littoralis_Contig174:258187..2583641680789838.7183216-UTR-P-littoralis_Contig174:258187..258364Pylaiella littoralis U1_48UTRP-littoralis_Contig174 258188..258364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig174.64.1prot_P-littoralis_Contig174.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig174 257798..258187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig174.64.1

>prot_P-littoralis_Contig174.64.1 ID=prot_P-littoralis_Contig174.64.1|Name=mRNA_P-littoralis_Contig174.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MQWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILRMRFRILKLAM
TYQKQYRLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAELQHTSGHN
LDSSSVGTKDLNDKPQVEAAHAVLKRKLTT
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mRNA from alignment at P-littoralis_Contig174:257798..258364-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig174.64.1 ID=mRNA_P-littoralis_Contig174.64.1|Name=mRNA_P-littoralis_Contig174.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig174:257798..258364- (Pylaiella littoralis U1_48)
ATGGTACCACGGAAACCCTGAAGGGGTGCTACCTCATCGTCGACAATGGT TACCACAAGGTGAAAAAATGTAAAGTACCACACGTTGCCGTGGGTTTGAC GTGCGACAATGAACGCGGTATGACACACAGAAGAGTAATATTTCCCCTGC TCTCCTTTGGTTTGTTTCGGTCCTTTCATGCAGTGGCGGATGCTCATTGA ACCCTCGAAGTACCCGTTGAGCGAGGCTGACTTGCTGTTCTCGAAGAGGC TGGAGAGCGTGCGCAAGGATGTGGAGTGTTTTTTCGGCATCCTGAGGATG CGCTTCAGAATCCTGAAGCTCGCCATGACCTACCAGAAGCAGTATCGCCT CGACTACGTCTTCTTCACATGCTGTATCCTGCACAACATGCTCCATACGC ATGACGGCATGGGCGGCCTGGAGGAGGACGTGAACTGGGTCGGCAGTGCC GAGCTCCAGCACACGTCGGGGCACAACCTGGACTCGAGCTCGGTCGGGAC CAAGGACCTCAACGACAAGCCCCAGGTCGAGGCCGCCCATGCGGTGCTCA AGCGGAAGCTGACCACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig174:257798..258364-

>mRNA_P-littoralis_Contig174.64.1 ID=mRNA_P-littoralis_Contig174.64.1|Name=mRNA_P-littoralis_Contig174.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig174:257798..258364- (Pylaiella littoralis U1_48)
ATGCAGTGGCGGATGCTCATTGAACCCTCGAAGTACCCGTTGAGCGAGGC
TGACTTGCTGTTCTCGAAGAGGCTGGAGAGCGTGCGCAAGGATGTGGAGT
GTTTTTTCGGCATCCTGAGGATGCGCTTCAGAATCCTGAAGCTCGCCATG
ACCTACCAGAAGCAGTATCGCCTCGACTACGTCTTCTTCACATGCTGTAT
CCTGCACAACATGCTCCATACGCATGACGGCATGGGCGGCCTGGAGGAGG
ACGTGAACTGGGTCGGCAGTGCCGAGCTCCAGCACACGTCGGGGCACAAC
CTGGACTCGAGCTCGGTCGGGACCAAGGACCTCAACGACAAGCCCCAGGT
CGAGGCCGCCCATGCGGTGCTCAAGCGGAAGCTGACCACG
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