mRNA_P-littoralis_Contig171.1.3 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI) HSP 1 Score: 918 bits (2372), Expect = 0.000e+0 Identity = 524/898 (58.35%), Postives = 590/898 (65.70%), Query Frame = 3
Query: 780 REAHMNSFMAK*HSYVSLVNRYRASIGELFRAAAQVGGPDIPMFGDFDDREGFNGACPSDPYLRDVWHTWFYRTPVIQMCRLRQADGIRMTRQDYLQRVGQLVDGMVLAGDASFKYAKVIRLTSAGNSKINKPIQGVFTILNECEQASYAAVFQKAMKTASLHGLKSDLKNLFINRYLGHGFKLPVLLLSDYCCEDRAMFVAMFREIEQATGVCLYDATASEAAAGGAPLEAFAFPEDKKGHVVWDDKAIDLAVAALVESCKTQGDVLGMDCEWEPPFDGSSESAVCTLQLALPDGTAYLFHFQRGARRTTSSTSNRNLKRLLNDPSITKVGVAVRGDGTRLQRDYDVETRGMVDLRSYARACWVDLSCRSLAGMTATALRKSLLKDPA----------------RVCCRHG------HFPFFSWQVRLYTNNHASCVALGTVQTKQVARSLLEKWGTDLTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPPPAADEQPREGVKRVSVKDMHSEEGFVLWDVVHVRLAPAHRSFRGTPVPAGGSDPDAYQDDFFDAPKLHRRVL---GD-----EDDESSDDDTPDESGAGVHASSV----GGADASGASADNS--PQERNRGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQVEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSLWGGESDGELDGGG 3365
REA+MNS+M + HSYVSLVNR R SIG RAAA+ G PDIP FG F D+EGFNGA PSD YLR VWH WFY T VI+ ADG+RMTR+DYLQRVGQLVDGMVLAGDASFKYAKVIRLTSAG S +KPIQG+FTILNE EQA A GGA L A FPE K G V+D AID+AVA LV C TQG VLGMDCEWEP F+GSSE VCTLQLALPDGT+ LFH QRG R T ST N NLKRLL D +ITKVGVAV+GDG RLQRDYDVETRGMVDLRSYARACWVDL CRSLAGMTATAL K L KD A C H ++ ++ + A GT +T++ A SLLEKWGT LTL GR GTRSGG +RVVVKV + LKP SFVPH APPPA D G +RV+VKD+ GFVLWD+VHVRLA AHRSF GTP+P G +D DA+QDDFFDAP+ + V GD E D SDDDT ESGAG +S GG AS D + QE MF VRLDLFHALNR+SRT+KKGHGAF+P MARLRDACFLVNRDD+ Q+E VLE RGM+P VQQ K+++W+ FLR CRRLVPPP EL +RFD+V++EFG CVDN S+EV+LRPK+MKAV LLRKHIV+GCLSDP+G+AM YA+GK GL YRCVRGTNDVEGYHRYLRTLLAS CAS ALA SVLL F+FRW++KMMVKNRGLPA LG HYNQ+LVE+I RAT E P + + SG R W + EL GGG
Sbjct: 2 REAYMNSYMMQYHSYVSLVNRCRRSIGGHVRAAAEEGAPDIPTFGGFGDKEGFNGAWPSDQYLRAVWHKWFYDTVVIE------ADGVRMTREDYLQRVGQLVDGMVLAGDASFKYAKVIRLTSAGESTKSKPIQGIFTILNEYEQA----------------------------------------------------------------------------AEGGAELAALTFPEGKTGVRVFDKTAIDIAVANLVGGCATQGMVLGMDCEWEPAFNGSSERPVCTLQLALPDGTSSLFHLQRGGRGITPSTFNTNLKRLLGDLAITKVGVAVKGDGKRLQRDYDVETRGMVDLRSYARACWVDLPCRSLAGMTATALGKYLSKDAAGRFSHWSRPELTPNQIEYACLDAYAAVLLHAEIGKFKDPIFGEAPSEVPAAGT-KTEEEATSLLEKWGTVLTLGGRVGTRSGGLQRVVVKVDNALKPSSFVPHDKAPPPAQD-----GQRRVTVKDVVDGAGFVLWDIVHVRLASAHRSFEGTPLPGGAADADAHQDDFFDAPRPAQAVYQNGGDVESDLEADSESDDDTFGESGAGADLASSEASSGGPSASXXXXDAAVASQEEAGDMFFVRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVNYRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT-----------ELPRLLAMASRRRFSGHRREEW---ARPELGGGG 797
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 833 bits (2152), Expect = 6.030e-281 Identity = 458/731 (62.65%), Postives = 509/731 (69.63%), Query Frame = 3
Query: 1428 DATASEAAAGGAPLEAFAFPEDKKGHVVWDDKAIDLAVAALVESCKTQGDVLGMDCEWEPPFDGSSESAVCTLQLALPDGTAYLFHFQRGARRTTSSTSNRNLKRLLNDPSITKVGVAVRGDGTRLQRDYDVETRGMVDLRSYARACWVDLSCRSLAGMTATALRKSLLKDPAR---------------------------------------VCCRHGHFPFFSWQVRLYTNNHASCVALGTVQTKQVARSLLEKWGTDLTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPPPAADE--QPREGVKRVSVKDMHSE---EGFVLWDVVHVRLAPAHRSFRGTPVPAGGSDPDAYQDDFFDAPKLHRRV----------LGDEDDESSDDDTPDESGAGVHASSV--------GGADASGASADN------------SPQERNRGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQ-------------VEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSLWGGESDGELDG 3359
DA ++E AGGA LE F+FPE K+G+VVWD+KAI+LAV VE CK QG VLGMDCEWEPPFDGSSE AVCTLQLALPDGTAYLFH QRG RRT ST NR+LK LLNDP+ITKVGVAV+GDG+RLQRDY VET GMVDLRSYAR CWVDL CRSLAGM ATAL KSL K+P+ C P +VRLYTNNH SCV +G VQ ++ ARSL+EKWGTDL L R GTRSGG KRVVVKVVDVLKP S PH+ APP QPR V S+ D+HS EGFVLWD+VHVRLA H F+G PVPA +DPDA+ D+FFD P+ + V LG E D SSDDDT DES AGV A G A A+ +P+E + G+FSVRLD FH LNRISR KK HGAFKPFMARLRDACFLVNRDD+ Q VEM LEARGM PE VQQ+ E+NW+ FLRS RRLVP D L +RFDRVIEEFGGCVDN S EV+LRPKAMKAVR LRKHI + CLSDP+GMAM +AIGKNK GLT YRCVRGTNDVEGYHRYLRTLLAS CAS +LA SVLL F++RW+++MM+KNRGLPAALGGHYNQYLVE I R TA WD S PVFPEWPAA+D VD GER GL RSLWGGE DGE+ G
Sbjct: 39 DAASTEETAGGAVLETFSFPEGKEGYVVWDEKAINLAVMEFVEGCKQQGHVLGMDCEWEPPFDGSSEGAVCTLQLALPDGTAYLFHLQRGTRRTRPSTFNRSLKVLLNDPTITKVGVAVKGDGSRLQRDYGVETCGMVDLRSYARTCWVDLPCRSLAGMVATALGKSLSKNPSVRFSRWSQAELTQNQVNYACLDAYAAVVLHAEIGKSKDPIFCMAPSDIPIAGTEVRLYTNNHESCVGVGQVQDEEAARSLVEKWGTDLKLAQREGTRSGGLKRVVVKVVDVLKPASLTPHQDAPPXXXXXXGQPRVAV---SMNDVHSGKGFEGFVLWDLVHVRLASDHHPFQGIPVPAASADPDAHVDNFFDEPRPAQAVYQNDGDVESALGGEPDGSSDDDTLDESAAGVGAXXXXXXXXXXKGAASAAXXXXXXXXXXXXXXXXXXAPEEPH-GVFSVRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHGLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLERSLWGGERDGEVWG 765
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 756 bits (1951), Expect = 1.980e-245 Identity = 453/885 (51.19%), Postives = 527/885 (59.55%), Query Frame = 3
Query: 711 SLIARLADDLLNGKGFSATSKFTREAHMNSFMAK*HSYVSLVNRYRASIGELFRAAAQVGGPDIPMFGDFDDREGFNGACPSDPYLRDVWHTWFYRTPVIQMCRLRQADGIRMTRQDYLQRVGQLVDGMVLAGDASFKYAKVIRLTSAGNSKINKPIQGVFTILNECEQASYAAVFQKAMKTASLHGLKSDLKNLFINRYLGHGFKLPVLLLSDYCCEDRAMFVAMFREIEQATGVCLYDATASEAAAGGAPLEAFAFPEDKKGHVVWDDKAIDLAVAALVESCKTQGDVLGMDCEWEPPFDGSSESAVCTLQLALPDGTAYLFHFQRGARRTTSSTSNRNLKRLLNDPSITKVGVAVRGDGTRLQRDYDVETRGMVDLRSYARACWVDLSCRSLAGMTATALRKSLLKDPARVCCRHGHFPFFSWQVRLYTNNHASCVALGTVQTKQVARSLLEKWGTDLTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPPPAADEQPREGVKRVSVKDMHSEEGFVLWDVVHVRLAPAHRSFRGTPVPAGGSDPDAYQDDFFDAPKLHRRVLGDEDDESSDDDTPDESGAGVHASSVGGADASGASADNSPQERNRGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQVEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSLWGGESDGELDGGG 3365
+++ARLADDLLNGKGFSATSKF REA+MNS+M + HSYVSLVNR + SIG FRAAA+ G PDIP+FG F DREGFNGA PSD YLR VWH WFY T VI++ R D + G S ++V VFQKAMKT+S+H LKSDLKNLF+NRY+GHGFKL V+L S AMFREIE+ T V L+DAT ++AA GGA L A FPE K G V+D AID+AVA L+ C TQG VLGMDCEWEP +GSSE VCTLQLALPDG ++LFH QRG R T +T N +LKRLLNDP+ITK+ A L +YA A + T + KDP P +VRLYTNNHASCVA+G VQT+ A SLLEKWGT LTL GR GTRSGG +RVVVKV + LKP SFVPH APPPA + G RVS+KD+ + +GFVLWD+VHVRLA AHRSF GTP+P G +D DAYQ DFFDAP+ + V + E A HA+S GG ASGA AD + QVE VLE RGMTP +QVK+ NW+ FL+ CRRLVPPP EL + FD+V+EEFG CVDN S+E +LRPK+MKAVRLLRKHIV+GCLSDP+G+AM YAIGK GL +YRCVRGTNDVEGYH LAS AS ALA SVLL F+FRW++KMMVKNR WDPS PVFP+W AAVD VD GERSGL RSLWGGE+ +G G
Sbjct: 329 AVVARLADDLLNGKGFSATSKFKREAYMNSYMMQYHSYVSLVNRCQRSIGGHFRAAAEEGTPDIPIFGGFGDREGFNGAWPSDQYLRAVWHKWFYETVVIEVRRFLMLDFSQ--------------------GACSLLVSQV--------------------------------VFQKAMKTSSVHDLKSDLKNLFVNRYIGHGFKLLVILFS-----------AMFREIEEETRVLLFDATGAKAAEGGAELAALTFPEGKTGVRVFDKTAIDIAVATLIGGCSTQGMVLGMDCEWEPALNGSSERPVCTLQLALPDGISFLFHLQRGVRGTKPATFNTSLKRLLNDPAITKIEYAC--------------------LDAYA------------AVLLHTEIGN--FKDPI-FSEAPSEVPAAGTKVRLYTNNHASCVAVGHVQTEDEASSLLEKWGTVLTLGGRVGTRSGGLRRVVVKVNNALKPFSFVPHDTAPPPA-----QHGQGRVSIKDVVAGDGFVLWDLVHVRLASAHRSFEGTPLPGGAADADAYQHDFFDAPRPAQAVYHNVRSMQVLIWRAVEQ-AVEHAASSGGPSASGADADAAVAS--------------------------------------------------QVEKVLECRGMTPAQAEQVKDHNWSFFLKRCRRLVPPPSELLKPFDKVVEEFGNCVDNVSKEALLRPKSMKAVRLLRKHIVAGCLSDPDGVAMYYAIGKTTDGLVRYRCVRGTNDVEGYH------LASYSASPALAQSVLLEFNFRWNLKMMVKNRD-----------------------WDPSFPVFPQWQAAVDSVDTGERSGLGRSLWGGENAKAWNGAG 1030
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI) HSP 1 Score: 623 bits (1607), Expect = 9.500e-202 Identity = 368/834 (44.12%), Postives = 478/834 (57.31%), Query Frame = 3
Query: 708 KSLIARLADDLLNGKGFSATSKFTREAHMNSFMAK*HSYVSLVNRYRASIGELFRAAAQVGGPDIPMFGDFDDREGFNGACPSDPYLRDVWHTWFYRTPVIQMCRLRQADGIRMTRQDYLQRVGQLVDGMVLAGDASFKYAKVIRLTSAGNSKINKPIQGVFTILNECEQASYAAVFQKAMKTASLHGLKSDLKNLFINRYLGHGFKLPVLLLSDYCCEDRAMFVAMFREIEQATGVCLYDATASEAAAGGAP----LEAFAFPEDKKGHVVWDDKAIDLA--VAALVESCKTQGDVLGMDCEWEPPFDGSSESAVCTLQLALPDGTAYLFHFQRGARRTTSSTSNRNLKRLLNDPSITKVGVAVRGDGTRLQRDYDVETRGMVDLRSYARACWVDLSCRSLAGMTATALRKSLLKDPARVCCRHGHFPFFSWQVRLYTNNHASCVALGTVQTKQVARSLLEKWGTDLTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPPPAADEQPREGVKRVSVKDMHSEEGFVLWDVVHVRLAPAHRSFRGTPVPAGGSDP-DAYQDD--FFDAPKLHRRVLGDEDDESSDDDTPDESG-----------------AGVHASSVGGADASGASADNSPQER-----------------------------NRGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQVEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVE 3044
KS++ RLADDLL G GF+A SK + + + SYVSL NR + ++ V IP F D GF+ + PS YL D+WH FY TPV+Q ADG TR++YLQR QLVDG LAGDASFKYAKVIRL++ + +P+ G+FTI+NE +Q VF KAM TAS+H LK+DLK +F+ R+LGHGFKLPV+ SD CC+DR + + MF+EIE TG LYD +E A GG+P L A FP K+G V+D + +A V AL++ C+ QG+VLG+DCEWEP G++ + V T+QL+LPDGTAY F QRG ++TTSS + L+ LL +PSI KVGV + D T L+RDY +E VDLR+YAR CWV+ RSLAGM ++ L + L KDP R P QVRLY+NNHASCV +G VQ A L W R G +VVV + V KP ++ HKGAP A+ GV RV++ + + + VLWDV HVRL + P+ + +AY D+ FF +P+ V +D++ D D + G AGV A GG +G + VRLD+FHAL RISR KK HGAFKPFMARL+DACF+VN+DDI++VE L ++GMTPE V + K+++W FLR+CRRLVP L ERF+ VI +F VD S EV++ PK M+AV LRKHI S LSDP+G+ + Y G+N G+T RCVRGTN E
Sbjct: 141 KSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMW---PNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQ------ADGCSWTREEYLQRRAQLVDGCSLAGDASFKYAKVIRLSAGADGTRARPVHGIFTIMNEYDQV----VFSKAMTTASVHDLKNDLKMMFVKRFLGHGFKLPVIFYSDECCDDRQLLLTMFKEIELETGARLYDT--AEEAGGGSPGVEVLPALEFPPGKRGECVFDFRPNSIAPSVVALIDGCQLQGNVLGLDCEWEPSLGGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAGMASSLLGRQLPKDPVIRLSRWSS-PLSDDQVRLYSNNHASCVGVGEVQDDDTAAEALAGWFPG-------ARRKGRLTQVVVGLSGVFKPAAYTAHKGAPRAAS------GVGRVTMDEAYKGDRLVLWDVAHVRLVSDWKPSPAAAAPSSNENASEAYNDNAQFFTSPRPPHVVRLQDDEDPDDGDEEEYDGHDCGDLGSSARGDHGLWAGVEAGGGGGGAVNGTXXXXXXXXXXXXXXXXXXXXXXXXXXGGDVDMDDWLGDEQCALQVRLDIFHALQRISRLCKKSHGAFKPFMARLKDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKSWTYFLRNCRRLVPERQRLLERFNSVINQFCNVVDAKSGEVLILPKVMQAVDQLRKHIESDRLSDPHGVPLYYTTGQNAAGITTRRCVRGTNCTE 945
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI) HSP 1 Score: 550 bits (1416), Expect = 1.350e-176 Identity = 324/769 (42.13%), Postives = 427/769 (55.53%), Query Frame = 3
Query: 1248 MKTASLHGLKSDLKNLFINRYLGHGFKLPVLLLSDYCCEDRAMFVAMFREIEQATGVCLYDATASEAAAGGAP----LEAFAFPEDKKGHVVWDDKAIDLA--VAALVESCKTQGDVLGMDCEWEPPFDGSSESAVCTLQLALPDGTAYLFHFQRGARRTTSSTSNRNLKRLLNDPSITKVGVAVRGDGTRLQRDYDVETRGMVDLRSYARACWVDLSCRSLAGMTATALRKSLLKDPARVCCRHG------------HFPFFS---------WQVRLYTNNHASCVALGTVQTKQVARSLLEKWGTDLTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPPPAADEQPREGVKRVSVKDMHSEEGFVLWDVVHVRLAPAHRSFRGTPVPAGGSDP-DAYQDD--FFDAPKLHRRVLGDEDDESSDDDTPDESG-----------------AGVHASSVGGADASGASADNSPQER-----------------------------NRGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQVEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSL 3326
M TAS+H LK+DLK +F+ R+LGHGFKLPV+ SD CC+DR + + MF+EIE TG LYD +E A GG+P L A FP K+G V+D + +A V AL + C+ QG+VLG+DCEWEP G++ + V T+QL+LPDGTAY F QRG ++TTSS + L+ LL +PSI KVGV + D T L+RDY +E VDLR+YAR CWV+ RSLAGM ++ L + L KDP R P FS +VRLY+NNHASCV +G VQ A L W R G +VVV + V KP ++ HKG P A+ GV RV++ + + + VLWDV HVRL + P+ + +AY D+ FF +P+ V +D++ D D + G AGV A GG +G + VRLD+FHAL RISR KK HGAFKPFMARLRDACF+VN+DDI++VE L ++GMTPE V + K++NW FLR+CRRLVP L ERF+ VI +F VD S EV++RPKAM+AV LRKHI S CLSDP+G+ + Y G+N G+T RCVRGTN E F++RW+++M VKNRGLP +G ++Q+ +E+I R T+ W P P+FPEW +A+D D GE+SGL++SL
Sbjct: 1 MTTASVHDLKNDLKMMFVKRFLGHGFKLPVIF-SDECCDDRQLLLTMFKEIELETGARLYDT--AEEAGGGSPGVEVLPALEFPPGKRGECVFDFRPNSIAPSVVALTDGCQLQGNVLGLDCEWEPSLAGTTPNPVSTVQLSLPDGTAYCFQLQRGNKKTTSSNFPKALQNLLENPSIAKVGVNINSDATYLERDYGIEVANTVDLRTYARQCWVETPSRSLAGMASSLLGRQLPKDPVIRSSRWSSPLSDNQEVAKFQDPIFSPPPVELHPGTKVRLYSNNHASCVGVGEVQDDDTAAEALAGWFPG-------ARRKGRLTQVVVGLSGVFKPAAYTAHKGTPSAAS------GVGRVTMDEAYKGDRLVLWDVAHVRLVSDWKPSPAAAAPSSNENASEAYNDNAQFFTSPRPPHVVRLQDDEDPDDGDEEEYDGHDCGDLGSSARGDHGFWAGVEAGGGGGGAVNGTXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVDMDDWLGDEQCALQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERFNSVINQFCNVVDAKSGEVLIRPKAMQAVDQLRKHIESDCLSDPHGVPLYYTTGQNAAGITTRRCVRGTNYTE--------------------------FNYRWNIRMAVKNRGLPREVGEFFDQFEIEIIQRETSSWYPDNPLFPEWISALDAADTGEKSGLSQSL 727
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE) HSP 1 Score: 348 bits (892), Expect = 2.480e-103 Identity = 201/445 (45.17%), Postives = 255/445 (57.30%), Query Frame = 3
Query: 2160 VLKPVSFVPHKGAPPPAADEQPREGVKRVSVKDMHSEEG--FVLWDVVHVRLAPAHRSFRGTPVP-AGGSDPDAYQD-DFFDAPKLHRRVLGDEDDESSDDDTPD-----------ESGAGVHASSVGGADASGASADNSPQE-----------------------------RNRGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQ---VEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSLWGGESDGEL 3353
V KP +++PHKGAP A+ GV RV++KD +S++G VLWD+ HVRL + P A +D AY D D F A K V+ +DDE SG G H GG VRLD+FHAL R+S+ KK HGAFKPFMARLRDACF+VN DDI++ VE L +GMTPE V + K++NW F+R+CRRLVP L ERF+ VI +F VD S E +LRP A +AV LLRKHI SGCLSDP + + Y GKN G+T RCVRGTN EGYHRY+R LL++ CAS +LAHSVLL F++RW+V+M VKNRGLP +G ++Q+ +E+I R TA W P P+FPEW +A+D D GE+SGL+ SLWG S G++
Sbjct: 5 VFKPAAYIPHKGAPRAAS------GVGRVTMKDANSDKGDRLVLWDIAHVRLVSDWKPLPAAAAPSANANDSAAYDDNDQFYASKRPPHVVHSQDDEDPXXXXXXXXXXXXXXXXXSSGGGDHWVGAGGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDMDYWVGNGESALKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNSAGITTRRCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDV 443
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE) HSP 1 Score: 337 bits (863), Expect = 8.780e-97 Identity = 198/445 (44.49%), Postives = 252/445 (56.63%), Query Frame = 3
Query: 2160 VLKPVSFVPHKGAPPPAADEQPREGVKRVSVKDMHSEEG--FVLWDVVHVRLAPAHRSFRGTPVP-AGGSDPDAYQD-DFFDAPKLHRRVLGDEDDESSDDDTPD-----------ESGAGVHASSVGGADASGASADNSPQE-----------------------------RNRGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQ---VEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSLWGGESDGEL 3353
V KP +++PHKGAP A+ GV RV++KD +S++G VLWD+ HVRL + P A +D AY D D F A K V+ +DDE SG G H GG VRLD+FHAL R+S+ KK HGAF+PFMARLRDACF+VN DDI++ VE L +GMTPE V + K++NW F+R+CRRLVP L ERF+ VI +F VD S E +LRP A +AV LLRKHI SGCLSDP + + Y G+T RCVRGTN EGYHRYLR LL++ CAS +LAHSVLL F++RW+V+M VKNRGLP +G ++Q+ +E+I R TA W P P+FPEW +A+D D GE+SGL+ SLWG S G++
Sbjct: 5 VFKPAAYIPHKGAPRAAS------GVGRVTMKDANSDKGDRLVLWDIAHVRLVSDWKPLPAAAAPSANANDSAAYDDNDQFYASKRPPHVVHSQDDEDPXXXXXXXXXXXXXXXXXSSGGGDHWVGAGGEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVDMDYWVGNGESALKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYT---KSAGITTRRCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPLFPEWVSALDAADTGEQSGLSESLWGPASGGDV 440
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 317 bits (813), Expect = 3.030e-86 Identity = 298/1035 (28.79%), Postives = 431/1035 (41.64%), Query Frame = 3
Query: 708 KSLIARLADDLLNGKGFSATSKFTREAHMNSFMAK*HSYVSLVNRYRASIGELFRAAAQVGGPDIPMFGDFDDREGFNGACPSDPYLRDVWHTWFYRTPVIQMCRLRQADGIRMTRQDYLQRVGQLVDGMVLAGDASFKYAKVIRLTSAGNSKINKPIQGVFTILNECEQASYAAVFQKAMKTASLHGLKSDLKNLFINRYLGHGFKLPVLLLSDYCCEDRAMFVAMFREIEQATGVCLYDATASEAAAGGAPLEAFAFPEDKKGHVV---WDDKAIDLAVAALVESCKTQGDVLGMDCEWEPPFDGSSESAVCTLQLALPDGTAYLFHFQRGARRTTSSTSNRNLKRLLNDPSITKVGVAVRGDGTRLQRDYDVETRGMVDLRSYARACWVDLSCR-SLAGMTATALRKSLLKDP-----------------------ARVCCR-HGHFPFFSW-------------QVRLYTNNHASCVALGTVQTKQVARSLLEKWGTD-LTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPPPAADEQPREGVKRVSVKDMHSEEGFVLWDVVHVRLAPAHRSF------------------------------------------------------------------RGTPVPAGGSDPDAYQDDFFDAPKLHRRVLGDEDDESSDDDTPDE---------------------SGAGVHASSVGGADASG-----------ASADNSPQERNRGMFS------VRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQVEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTK-YRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSLW-----GGESDGELD 3356
+ ++A +AD+L++ KGFSA+S+ ++AH+ F + Y S++ L+R Q+ FG F+D +G+NG PS+ YL VW C R+ + ++++K + GV V QKA+++ASL LK DLK LFI RY G GFKLP L+ +D CC D+A+ +F E+ A+ + T S A P+ P+ G V D + AV A+ + +L +D EWE G+ + T+QLA +FH G R + + L LL D +TK GV ++GD TRL Y VE VDLRS A V+L R LA + L + L KDP A C HG S +VRLYT CV G + E WGT LV R TR +R V++ V P + + A P + RV + +LWD +R A + RG P GG + D +A RR G E TP E +G+G A A A G +AD S E +F V+LD FHA+ R+S+ + K HGA + ++ARLRDA F VN +D+ VE L GM+ E V+ K ++W FL+ CRRL+P P EL ERFD V +GG +D +++ + R +A++A++ LR HI++ C SD A+ + GK+ L +RC+RGTND+EGYH ++R L+A C S LAH +LL +++RW+++ +KNRGL A+GG Y+Q ++E I R T+ + +W D GERSG RS++ GG +D L+
Sbjct: 33 RDVVAEVADNLMHAKGFSASSEALQQAHLYRFHSMELKYYSML---------LWRREEQLDAGVEDEFGSFEDADGYNGFSPSEHYLSTVW------------CE---------------------------------------RMQQSRAARLDKHVNGV----------QGEVVLQKALQSASLRELKQDLKALFITRYTGGGFKLPRLVSTDECCNDKALLNEIFEEL--ASEGHQFSVTNSVPIASECPVLHLP-PDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVV-IFHVLHGQRSVPAELPD-PLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLYTRAGNDCVGEGCI-----VEHTDETWGTTGFYLVPRRATRRFA-RRWAVRLDRVHVPRAKTLYPDATDPRGTPATAQLASRV--------DSVILWDASRLRKTTAILTVGAAGEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEARTAAXXXXTSSVHVETSTVSCERGGPGGGGGKEGPRLPDSVGEADA--RRGAGQGGTEFV---TPSEPFFCGELDGIEALSSESVACSAGSGGLADEGQAATAGGDDEEEDEVPLDVTADTSSAEVEELLFLKVAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAW-CISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAK-YSQWLPTSAYGDTGERSGFVRSIFPSNVVGGGTDSVLE 971
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: A0A6H5JYR4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYR4_9PHAE) HSP 1 Score: 286 bits (733), Expect = 2.110e-80 Identity = 235/662 (35.50%), Postives = 303/662 (45.77%), Query Frame = 3
Query: 1092 GMVLAGDASFKYAKVIRLTSAGNSKINKPIQGVFTILNECEQASYAAVFQKAMKTASLHGLKSDLKNLFINRYLGHGFKLPVLLLSDYCCEDRAMFVAMFREIEQATGVCLYDATASEAAAGGAPLEAFAFPEDKKGHVVWD--DKAIDLAVAALVESCKTQGDVLGMDCEWEPPFDGSSESAVCTLQLALPDGTAYLFHFQRGARRTTSSTSNRNLKRLLNDPSITKVGVAVRGDGTRLQRDYDVETRGMVDLRSYARACWVDLSCRSLAGMTATALRKSLLKD------------------PARV--CCRHGHF-------------PFFS---------WQVRLYTNNHASCVALGTVQTKQVARSLLEKWGTDLTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPP--PAADE-------QPREGVKRVSVKDMHSEEG--FVLWDVVHVRLAPAHRSFRGTPVPAGGS----DPDAYQDD--FFDAPKLHRRVLGDEDDESSDDDTPDESGAGVH----ASSVGGADASGASADNSPQERN----------------RGMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQ---VEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCER 2825
G V GDASFKYAKVIRL + + +P+ +FTI+NE Q +F K M TAS++ LK+DLK LF+ R++GHGFKLPV+ SD CCEDR + ++MF+EIE V LYDA A A L FP K+G +V+D I + V +L++ C+ E + G VGV V D T L RDY V+ VDL YAR WV+ SLAGMT++ LRK L K+ P +V C + P S +VRLYTNNHASCV +G + A L WG G +R VV V +V KP ++V H GAPP PA+ + PR G +++D+ + G V WDV VRLA ++ P AG S AY DD + P V E+D DD D G H S GG+D G + + + +VRLD+FHAL RISR K HGAFKPFMARLRDACF+VN DD+++ VE LE +GMT E + + K++NW FLR+CRRLVP P L R
Sbjct: 10 GHVKTGDASFKYAKVIRLATGEDGTRARPVYEIFTIMNEYNQV----IFSKVMSTASVYDLKNDLKMLFVKRFVGHGFKLPVIFYSDDCCEDRQLLLSMFKEIESEDHVRLYDAAAEGAIE---LLPELMFPPGKRGELVYDLRPSVIAIPVTSLLDECER--------VEXGYIWGG--------------------------------------------------VGVNVNLDATYLARDYRVQVANTVDLGVYARQGWVETPSYSLAGMTSSLLRKELPKNAIIRLSRWSGPSLTDKQVPLQVQYACLDAYASVLLCQEIRKLQDPILSPPPKDLPSGTEVRLYTNNHASCVGVGKMVDDDAAAEALATWGVR---------GKGRGQRAVVSVSEVFKPAAYVAHMGAPPVPPASSDAEGGPATSPRAG--HATMEDVQNGGGAQLVPWDVDDVRLA---NEWKPPPAAAGSSANVNTSAAYNDDNQVYSYPTPPHVVQPTEED--PDDGVED--GCDGHDCGDVGSSGGSDHWGGAGGEAXXXXXXXXXXADVAMDYWGGCQPALNVRLDIFHALQRISRLCKTKHGAFKPFMARLRDACFIVNADDVKEASAVERALEGQGMTSEAIAEYKDKNWTYFLRNCRRLVPEPKRLNTR 588
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE) HSP 1 Score: 289 bits (740), Expect = 5.600e-79 Identity = 186/500 (37.20%), Postives = 264/500 (52.80%), Query Frame = 3
Query: 1974 PFFSWQVRLYTNNHASCVALGTVQTKQVARSLLEKWGTDLTLVGRAGTRSGGFKRVVVKVVDVLKPVSFVPHKGAPPPAADEQPRE---------------------GVKRVS-----VKDMHSEEGFVLWDVVHVRLAPAHRSFRGTPVPAGGSDPDAYQDDF-FDAPKLHRRVLG----DEDDESSDDDTPDESGAGVHAS-----SVGGADASGASADNSPQERNR-------------GMFSVRLDLFHALNRISRTVKKGHGAFKPFMARLRDACFLVNRDDIQQVEMVLEARGMTPEHVQQVKERNWALFLRSCRRLVPPPDELCERFDRVIEEFGGCVDNDSREVILRPKAMKAVRLLRKHIVSGCLSDPNGMAMSYAIGKNKGGLTKYRCVRGTNDVEGYHRYLRTLLAS*CASLALAHSVLLGFSFRWDVKMMVKNRGLPAALGGHYNQYLVELIHRATACWDPSCPVFPEWPAAVDLVDAGERSGLARSL 3326
P +VRLY +H++CVA+G V + A + L W + L G +G R VVVK+ + P +F + +PP R G K+V V + EG VLWD+ H+R A +++ V GG + Y D+F D + + V G D D + DD DE + +S +V + A+GA++ +S VRLD FH + R+++ V KGHGAF A LRDA F+VN+ DI+ E VL+ G + +Q +K ++W FL++ RR VP P+ L RFD VI D + +V+L P AMKAV LLR+HI GC SDP G+ + + GK GLT++RCVRGTN EGYHRYL+TLLA+ CAS + H+VL+ F+ RW++ V+NRG+ A +GG +QY+++ I RATA W P P+F W A D D+GER+GLA S+
Sbjct: 16 PAIGLKVRLYNASHSACVAVGHVVSDATAEAALRHWQSSARLQGLSGRRQS----VVVKISEAKVPSAFFQYAKSPPSPEGNGSRRCTIGQAAPKIAFPKHGATTGGGGKKVGDESPEVAECGEFEGMVLWDLDHMRDADSYKPPLHRVVDDGGVE---YTDNFSLDNLPMGKVVQGRDVIDSVDVAEDDGVEDEEPLDLDSSVDDVEAVASSTATGAASGDSALPXXXXXXXXXXXXXAAASSLPVRLDPFHGITRVTKWVPKGHGAFFLLCALLRDAIFMVNQADIKAAERVLQNEGKSAADIQNMKAKDWGFFLKNARRRVPAPEVLLARFDAVISACKDIRDAKTGQVLLSPAAMKAVGLLREHIRLGCFSDPVGVPLYFERGKTSTGLTRFRCVRGTNSTEGYHRYLKTLLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGFSHQYMIDHIQRATAEWYPDQPLFSGWVAPADFEDSGERAGLAASV 508 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig171.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig171.1.3 >prot_P-littoralis_Contig171.1.3 ID=prot_P-littoralis_Contig171.1.3|Name=mRNA_P-littoralis_Contig171.1.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=726bp MFGDFDDREGFNGACPSDPYLRDVWHTWFYRTPVIQMCRLRQADGIRMTRback to top mRNA from alignment at P-littoralis_Contig171:4992..11969- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig171.1.3 ID=mRNA_P-littoralis_Contig171.1.3|Name=mRNA_P-littoralis_Contig171.1.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=6978bp|location=Sequence derived from alignment at P-littoralis_Contig171:4992..11969- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig171:4992..11969- >mRNA_P-littoralis_Contig171.1.3 ID=mRNA_P-littoralis_Contig171.1.3|Name=mRNA_P-littoralis_Contig171.1.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2178bp|location=Sequence derived from alignment at P-littoralis_Contig171:4992..11969- (Pylaiella littoralis U1_48)back to top |