|
|
Homology
BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Match: D7FK60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK60_ECTSI) HSP 1 Score: 228 bits (582), Expect = 4.060e-60 Identity = 282/646 (43.65%), Postives = 317/646 (49.07%), Query Frame = 2
Query: 491 TPPRGFGLRHRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIAALSKSGRWKEAMAILDGMEEEATGGGAARDVMSFSSAMAACRAA--GKAEEAHGLLSRMMSQWKKQRREAAGVKGGGNGSSGISGSGGDVKPNLWCFNTVLSALAKRGLSRRALSVVEVDMADAKVTPDLRTWSTLIDACRAGGWSGQQTVALISRMRSAGVEPDIWCFNHCLNATSRGGEWELAFGLLKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAGTEAPPNVWNFNISIDAHSKSGEWEKAVDLLRRAMPAAGVKXXXXXXXXXXXXXXXXXXXXXALALWDEMTAS--PSSLSSSSPATTXXXXXXTAKATVVPNDYTYSIIIDVCAKAGLVDRALALLSESHAAGTFPTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGRQL----------GERELGLALGLTEEMKRNGVAPTNFSHSAAITLCAIAGQHERALELFEELRVAAASGSGDAEMPPPNEAVFTAIIDSC---------GGSGQWETAMRFLEDMEEVSGVAPTLAAXXXXXXXXXXXXXXXLGHSLLERMR-LGGVDPEVSSMNALIRGL 2356
+PPR LR+RPA+DGKRFVR QRLG +G W LSLLR AEGDGA VN +MYNA I ALSKS ACRAA G+ +EA+G+LSRM ++ G VKPN+ CFNTVL+A AK G SR+ALS+VE DM +A GEWELAFGLL+D XXXXXXXXXXXXXXXXXXXXXXXXXXX + G+ AP V LLR+ MPAAGV X XXXXXXXXXXXXXXXXX ALWDE A+ PS+L+S + AAG P L XXXXXXXXXXXXXXXXXXXXXXX FRG + GEREL LALGL EEMK G+ PT+FSHSAAI LC A QHERALELFEELR SG A +E FTAIIDSC GG G+WETA+ L++ME SGVAP++A LG SLL RM + GVDP VSSMNALIRGL
Sbjct: 81 SPPRRL-LRNRPAEDGKRFVRVAQRLGGQGKWERVLSLLRQAEGDGAVVNHIMYNAAIGALSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE----ACRAARGGRPDEAYGILSRMTART----------------------GGKSVKPNMRCFNTVLAAFAKSGRSRQALSLVEEDMVNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWELAFGLLEDMGXXXXXXXXXXXXXXXXXXXXXXXXXXXPALLRAMKEGGSTAPXXXXXXXXXXXXXXXXXXXXXXVSLLRKDMPAAGVAXDVTXXXXXXXXXXXXXXXXXXXALWDEARAALPPSALNSHA---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXAAGLPPNLRSXXXXXXXXXXXXXXXXXXXXXXXMEEAGLEPDVVSFTSAIAAFRGGKAAXXXXXXXXXGERELSLALGLLEEMKSRGLPPTSFSHSAAIKLCTDANQHERALELFEELRA-----SGQAA----DEPAFTAIIDSCARHSGSGSGGGEGRWETAVALLDEME-ASGVAPSVATFNGAIRACCNGGKWHLGSSLLRRMSAVDGVDPNVSSMNALIRGL 668
BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Match: A0A835ZF41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF41_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 9.080e-5 Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 2
Query: 515 RHRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIAALSKSGRWKEAMAILDGMEEEATGG--------GAARDVMSFSSAMAACRAAGKAEEAHGLLS 832
R +P +D ++ +R +Q+LG +W A+ + G R++ +Y+ + AL++SGRW+EA A+L+ E A GG G A D F++A++AC + E A LLS
Sbjct: 6 RPQPIRDEQQLLRAIQKLGRDQDWQQAMDVFARGRQAGIRMSLRVYSGALTALARSGRWREATALLE--EALADGGSGXXXXXXGIAPDAALFTAAISACEEDAQWESAVRLLS 117
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7FK60 |
| Model size | 3046 |
| Max annot lvl | 2880.D7FK60|- |
| Hectar predicted targeting category | mitochondrion |
| Exons | 2 |
| Evalue | 1.05e-61 |
| EggNOG OGs | KOG4197@1|root,KOG4197@2759|Eukaryota |
| Ec32 ortholog description | Tetratricopeptide-like helical domain |
| Ec32 ortholog | Ec-04_005710.1 |
| Description | endonuclease activity |
| Cds size | 2304 |
| COG category | S |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789816.2023256-UTR-P-littoralis_Contig17:306179..306246 | 1680789816.2023256-UTR-P-littoralis_Contig17:306179..306246 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig17 306180..306246 + |
| 1680789816.2340171-UTR-P-littoralis_Contig17:308998..309673 | 1680789816.2340171-UTR-P-littoralis_Contig17:308998..309673 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig17 308999..309673 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789816.2141821-CDS-P-littoralis_Contig17:306246..307503 | 1680789816.2141821-CDS-P-littoralis_Contig17:306246..307503 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig17 306247..307503 + |
| 1680789816.2251606-CDS-P-littoralis_Contig17:307951..308998 | 1680789816.2251606-CDS-P-littoralis_Contig17:307951..308998 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig17 307952..308998 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig17.62.1 >prot_P-littoralis_Contig17.62.1 ID=prot_P-littoralis_Contig17.62.1|Name=mRNA_P-littoralis_Contig17.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=768bp
MATLQARTVMRAPVSRACRRSRSCSRSTSVSAAPLLLATRREGPTRAAAP PPTTAPPATSFFFSFSTFHSYSTVKQHPSTCSCCCRGYSTVPARRTTTSG SSTPCAPKAGKSKPAAAAVAAAATGSVSPRSPPPPLPPPSSTPPRGFGLR HRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIA ALSKSGRWKEAMAILDGMEEEATGGGAARDVMSFSSAMAACRAAGKAEEA HGLLSRMMSQWKKQRREAAGVKGGGNGSSGISGSGGDVKPNLWCFNTVLS ALAKRGLSRRALSVVEVDMADAKVTPDLRTWSTLIDACRAGGWSGQQTVA LISRMRSAGVEPDIWCFNHCLNATSRGGEWELAFGLLKDMGRAGLQPDCW SYSAAMKTCVNAEQWKIVPVLLEAMVDAGTEAPPNVWNFNISIDAHSKSG EWEKAVDLLRRAMPAAGVKPNVVSYGSCLDAARKAGQWEVALALWDEMTA SPSSLSSSSPATTKATKATTAKATVVPNDYTYSIIIDVCAKAGLVDRALA LLSESHAAGTFPTLFMFNSAIDACSRAGRWEHALGLLRDIGEAGLRPDAI SYTSVIAAFRGRQLGERELGLALGLTEEMKRNGVAPTNFSHSAAITLCAI AGQHERALELFEELRVAAASGSGDAEMPPPNEAVFTAIIDSCGGSGQWET AMRFLEDMEEVSGVAPTLAAFNGAIRACCSGGRWDLGHSLLERMRLGGVD PEVSSMNALIRGLGSRK* back to topmRNA from alignment at P-littoralis_Contig17:306180..309673+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig17.62.1 ID=mRNA_P-littoralis_Contig17.62.1|Name=mRNA_P-littoralis_Contig17.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3494bp|location=Sequence derived from alignment at P-littoralis_Contig17:306180..309673+ (Pylaiella littoralis U1_48) CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTCTGTGTGTGTGTCTGCTGCG
CTGTGCATAAGGGGAGCATGGCGACACTACAAGCAAGGACGGTGATGCGT
GCGCCTGTCAGTAGAGCCTGTCGAAGAAGCCGATCATGCTCCAGAAGTAC
ATCGGTGAGTGCCGCGCCACTGCTGCTGGCAACACGTAGGGAAGGACCGA
CGAGAGCAGCAGCACCGCCACCAACAACAGCACCGCCAGCTACCTCCTTC
TTCTTCTCCTTCTCCACCTTCCATTCTTACTCTACCGTGAAACAACATCC
TTCTACCTGTAGCTGTTGTTGTAGGGGATACAGCACAGTGCCCGCCAGAA
GGACCACCACCAGCGGCAGCAGCACTCCTTGTGCACCCAAGGCTGGAAAA
TCAAAGCCCGCTGCGGCAGCAGTAGCAGCGGCAGCAACGGGCTCGGTATC
CCCTCGATCCCCTCCTCCTCCTCTTCCTCCTCCTTCTTCTACTCCTCCTC
GCGGTTTCGGTTTGCGACACCGCCCCGCTCAAGACGGGAAGCGGTTCGTG
CGCGAAGTGCAACGGTTGGGTGTCAAGGGAAACTGGCCTGGAGCCCTGTC
CTTGCTTCGAACCGCCGAGGGGGACGGCGCCAGAGTGAACAGCGTCATGT
ACAACGCCACGATTGCGGCCCTCTCGAAGAGCGGGCGTTGGAAGGAGGCG
ATGGCCATCCTGGACGGAATGGAGGAGGAGGCCACTGGCGGTGGCGCTGC
GCGAGACGTCATGAGCTTCTCTTCGGCGATGGCGGCGTGCAGGGCAGCGG
GAAAGGCAGAGGAAGCGCACGGCCTCCTGTCGCGTATGATGTCGCAATGG
AAGAAGCAAAGGCGTGAAGCCGCCGGGGTGAAAGGGGGTGGGAACGGGAG
TAGCGGGATTAGCGGGAGTGGGGGTGACGTGAAGCCAAACCTCTGGTGCT
TCAACACGGTCCTCTCGGCACTGGCCAAGCGAGGCCTGTCTCGGCGAGCG
CTGTCCGTTGTCGAGGTAGACATGGCGGACGCGAAGGTGACGCCAGACCT
CCGAACATGGTCGACCTTGATCGATGCCTGCCGAGCCGGCGGTTGGAGCG
GGCAACAGACCGTTGCGCTGATATCGAGAATGAGGAGCGCCGGCGTTGAG
CCGGACATCTGGTGCTTCAACCACTGCCTGAACGCCACGAGTCGGGGGGG
TGAGTGGGAGCTCGCCTTTGGCCTTCTGAAGGACATGGGCAGAGCGGGGC
TGCAGCCCGACTGCTGGAGCTACTCCGCGGCGATGAAGACGTGTGTGAAT
GCGGAGCAGTGGAAGATAGTGCCGGTAGGTGTTTTGCTGTCGAATCCCAC
TGTTTCCCTCTCCGCTGCTGTCCGTACATGATGCTGTTGTTATCCATGAT
ATCTACCGGCGAATGTTTGGCTTGCTCGCTGTTTTGAAATTGGCACGCCA
GTATCATGCTTGGTTGACAAAAACAAGCAGTGATACCAGGGGATGCGCAG
TAGTGAATGCATCTGGGTTCCTAGTAACAGTGTCCGGCTGCCATTCCCTT
AAGTTCCTTGGCATGCCCACCGGTATTTATCCATGAAACAGCAGTGGGAG
GTGCCGAGGTATATGAGGGGGTCAACTAACAACAACCTTTTGCGTAGAGG
ATGTAATTGTAATCAATTTCGCAATATCTTTCGGCCGGGCCCGGCCCGGG
CGTGGCACGTTTTACTTCTTGGAAATCACACCACCACTACCACCACCACG
ACCACCACCACTTTCTGAGCAGGTGCTGCTGGAAGCGATGGTGGATGCCG
GCACGGAGGCCCCGCCGAACGTCTGGAACTTCAACATCTCCATCGACGCT
CACAGTAAGTCCGGGGAGTGGGAGAAAGCGGTGGACCTATTGCGGAGGGC
CATGCCGGCGGCGGGTGTCAAGCCCAACGTGGTCAGCTATGGGTCTTGTC
TAGACGCGGCGAGGAAGGCCGGACAGTGGGAGGTCGCGCTCGCCCTTTGG
GACGAGATGACTGCGAGTCCGTCGAGCTTGAGCTCGAGCTCGCCGGCTAC
GACGAAAGCGACGAAAGCGACGACGGCGAAGGCGACGGTAGTGCCCAACG
ACTACACGTACAGCATCATCATTGACGTGTGCGCGAAGGCGGGGCTGGTG
GACAGGGCCCTCGCCCTGCTGTCGGAGTCTCACGCCGCTGGGACTTTCCC
GACCCTCTTCATGTTCAACTCGGCCATCGACGCGTGCTCGAGGGCGGGCC
GGTGGGAGCACGCCCTGGGTCTTCTGAGAGATATTGGCGAGGCCGGCCTC
AGACCGGACGCTATCTCCTACACCTCCGTGATCGCGGCATTCCGAGGGCG
CCAGTTGGGGGAGCGGGAGCTGGGGCTGGCGCTGGGGCTGACCGAGGAGA
TGAAGCGGAACGGCGTTGCGCCGACGAACTTTTCCCACTCGGCGGCGATC
ACGCTCTGCGCCATCGCCGGCCAGCACGAGCGGGCGCTGGAGCTGTTCGA
GGAGCTGAGAGTCGCGGCGGCGTCCGGGTCGGGGGATGCGGAGATGCCGC
CGCCTAACGAGGCCGTGTTCACCGCGATCATCGACAGCTGCGGCGGCAGC
GGTCAGTGGGAGACGGCGATGCGCTTCCTGGAAGATATGGAGGAGGTGTC
GGGTGTGGCACCGACCCTGGCGGCGTTTAACGGAGCCATTCGAGCCTGCT
GCAGTGGCGGGAGGTGGGACCTGGGCCACTCTCTGCTGGAGAGAATGAGG
CTGGGCGGGGTCGATCCAGAAGTTTCCAGCATGAACGCCCTCATCAGGGG
GTTGGGTTCGAGAAAGTAGTACCGGTATCGTAGTCCTTGGGTGCAGAGGT
GGAAATGTAGTGGTAAAAGTAGGCGGAGTGATGCGTCAGATACCATCCTC
GTCGTGACGGCAGGTCTAAGTGAAACCTAGGGAGCACACTGCAGGAGAAG
ATCTGTGTACCTACTTCGTATCATATGATATTTTAGTGTTTGTGTAGAGA
TCCCACTGCGGGATTCCGGAAGAAGCCAGCCCACGTCCTGAGCGGCGATG
CCGAGGCTTCACACATTCGACGGGGTGGTTGGCGAGCACACGAGCACGGG
ACGAAGGACAATCAATTTTCGTCTAGAACGCAACGTTCGGTTGGAGCCGC
TTGTGGATCATCAGAGCTTTGTCGCAGCGCCTATCGTTCTTCTTATCATG
GAGCAAGAAGGAGTATTATTTTACGTGATTCAACTTCGTCGGAGTATGTA
GTACGGCGGGAATGTTCCGTCGTGTTGAGGCACATCATTCCTTCTCGGGT
TGGGTAGAGAGAGAAGAATCAGGCAGGCCGAAATACACAGCATGCGTGCT
GTTCTCTCGAGCGCGCCCTTCCTTTCTAGCGCAAAAATCCCTACACCTCG
TGGGTACGCTTGAACACGTGCTCGTCCGTTTATGTTGAGCGAAAATGATT
AGGGGCCGCGGACACAACAGGCAGTGGTGCCACCATAACAAGCA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig17:306180..309673+ >mRNA_P-littoralis_Contig17.62.1 ID=mRNA_P-littoralis_Contig17.62.1|Name=mRNA_P-littoralis_Contig17.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2304bp|location=Sequence derived from alignment at P-littoralis_Contig17:306180..309673+ (Pylaiella littoralis U1_48) ATGGCGACACTACAAGCAAGGACGGTGATGCGTGCGCCTGTCAGTAGAGC CTGTCGAAGAAGCCGATCATGCTCCAGAAGTACATCGGTGAGTGCCGCGC CACTGCTGCTGGCAACACGTAGGGAAGGACCGACGAGAGCAGCAGCACCG CCACCAACAACAGCACCGCCAGCTACCTCCTTCTTCTTCTCCTTCTCCAC CTTCCATTCTTACTCTACCGTGAAACAACATCCTTCTACCTGTAGCTGTT GTTGTAGGGGATACAGCACAGTGCCCGCCAGAAGGACCACCACCAGCGGC AGCAGCACTCCTTGTGCACCCAAGGCTGGAAAATCAAAGCCCGCTGCGGC AGCAGTAGCAGCGGCAGCAACGGGCTCGGTATCCCCTCGATCCCCTCCTC CTCCTCTTCCTCCTCCTTCTTCTACTCCTCCTCGCGGTTTCGGTTTGCGA CACCGCCCCGCTCAAGACGGGAAGCGGTTCGTGCGCGAAGTGCAACGGTT GGGTGTCAAGGGAAACTGGCCTGGAGCCCTGTCCTTGCTTCGAACCGCCG AGGGGGACGGCGCCAGAGTGAACAGCGTCATGTACAACGCCACGATTGCG GCCCTCTCGAAGAGCGGGCGTTGGAAGGAGGCGATGGCCATCCTGGACGG AATGGAGGAGGAGGCCACTGGCGGTGGCGCTGCGCGAGACGTCATGAGCT TCTCTTCGGCGATGGCGGCGTGCAGGGCAGCGGGAAAGGCAGAGGAAGCG CACGGCCTCCTGTCGCGTATGATGTCGCAATGGAAGAAGCAAAGGCGTGA AGCCGCCGGGGTGAAAGGGGGTGGGAACGGGAGTAGCGGGATTAGCGGGA GTGGGGGTGACGTGAAGCCAAACCTCTGGTGCTTCAACACGGTCCTCTCG GCACTGGCCAAGCGAGGCCTGTCTCGGCGAGCGCTGTCCGTTGTCGAGGT AGACATGGCGGACGCGAAGGTGACGCCAGACCTCCGAACATGGTCGACCT TGATCGATGCCTGCCGAGCCGGCGGTTGGAGCGGGCAACAGACCGTTGCG CTGATATCGAGAATGAGGAGCGCCGGCGTTGAGCCGGACATCTGGTGCTT CAACCACTGCCTGAACGCCACGAGTCGGGGGGGTGAGTGGGAGCTCGCCT TTGGCCTTCTGAAGGACATGGGCAGAGCGGGGCTGCAGCCCGACTGCTGG AGCTACTCCGCGGCGATGAAGACGTGTGTGAATGCGGAGCAGTGGAAGAT AGTGCCGGTGCTGCTGGAAGCGATGGTGGATGCCGGCACGGAGGCCCCGC CGAACGTCTGGAACTTCAACATCTCCATCGACGCTCACAGTAAGTCCGGG GAGTGGGAGAAAGCGGTGGACCTATTGCGGAGGGCCATGCCGGCGGCGGG TGTCAAGCCCAACGTGGTCAGCTATGGGTCTTGTCTAGACGCGGCGAGGA AGGCCGGACAGTGGGAGGTCGCGCTCGCCCTTTGGGACGAGATGACTGCG AGTCCGTCGAGCTTGAGCTCGAGCTCGCCGGCTACGACGAAAGCGACGAA AGCGACGACGGCGAAGGCGACGGTAGTGCCCAACGACTACACGTACAGCA TCATCATTGACGTGTGCGCGAAGGCGGGGCTGGTGGACAGGGCCCTCGCC CTGCTGTCGGAGTCTCACGCCGCTGGGACTTTCCCGACCCTCTTCATGTT CAACTCGGCCATCGACGCGTGCTCGAGGGCGGGCCGGTGGGAGCACGCCC TGGGTCTTCTGAGAGATATTGGCGAGGCCGGCCTCAGACCGGACGCTATC TCCTACACCTCCGTGATCGCGGCATTCCGAGGGCGCCAGTTGGGGGAGCG GGAGCTGGGGCTGGCGCTGGGGCTGACCGAGGAGATGAAGCGGAACGGCG TTGCGCCGACGAACTTTTCCCACTCGGCGGCGATCACGCTCTGCGCCATC GCCGGCCAGCACGAGCGGGCGCTGGAGCTGTTCGAGGAGCTGAGAGTCGC GGCGGCGTCCGGGTCGGGGGATGCGGAGATGCCGCCGCCTAACGAGGCCG TGTTCACCGCGATCATCGACAGCTGCGGCGGCAGCGGTCAGTGGGAGACG GCGATGCGCTTCCTGGAAGATATGGAGGAGGTGTCGGGTGTGGCACCGAC CCTGGCGGCGTTTAACGGAGCCATTCGAGCCTGCTGCAGTGGCGGGAGGT GGGACCTGGGCCACTCTCTGCTGGAGAGAATGAGGCTGGGCGGGGTCGAT CCAGAAGTTTCCAGCATGAACGCCCTCATCAGGGGGTTGGGTTCGAGAAA GTAG back to top
|