mRNA_P-littoralis_Contig17.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.62.1
Unique NamemRNA_P-littoralis_Contig17.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Match: D7FK60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK60_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 4.060e-60
Identity = 282/646 (43.65%), Postives = 317/646 (49.07%), Query Frame = 2
Query:  491 TPPRGFGLRHRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIAALSKSGRWKEAMAILDGMEEEATGGGAARDVMSFSSAMAACRAA--GKAEEAHGLLSRMMSQWKKQRREAAGVKGGGNGSSGISGSGGDVKPNLWCFNTVLSALAKRGLSRRALSVVEVDMADAKVTPDLRTWSTLIDACRAGGWSGQQTVALISRMRSAGVEPDIWCFNHCLNATSRGGEWELAFGLLKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAGTEAPPNVWNFNISIDAHSKSGEWEKAVDLLRRAMPAAGVKXXXXXXXXXXXXXXXXXXXXXALALWDEMTAS--PSSLSSSSPATTXXXXXXTAKATVVPNDYTYSIIIDVCAKAGLVDRALALLSESHAAGTFPTLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRGRQL----------GERELGLALGLTEEMKRNGVAPTNFSHSAAITLCAIAGQHERALELFEELRVAAASGSGDAEMPPPNEAVFTAIIDSC---------GGSGQWETAMRFLEDMEEVSGVAPTLAAXXXXXXXXXXXXXXXLGHSLLERMR-LGGVDPEVSSMNALIRGL 2356
            +PPR   LR+RPA+DGKRFVR  QRLG +G W   LSLLR AEGDGA VN +MYNA I ALSKS                                  ACRAA  G+ +EA+G+LSRM ++                        G  VKPN+ CFNTVL+A AK G SR+ALS+VE DM +A                                                       GEWELAFGLL+D  XXXXXXXXXXXXXXXXXXXXXXXXXXX        + G+ AP                      V LLR+ MPAAGV X   XXXXXXXXXXXXXXXXX  ALWDE  A+  PS+L+S +                                               AAG  P L  XXXXXXXXXXXXXXXXXXXXXXX                   FRG +           GEREL LALGL EEMK  G+ PT+FSHSAAI LC  A QHERALELFEELR      SG A     +E  FTAIIDSC         GG G+WETA+  L++ME  SGVAP++A                LG SLL RM  + GVDP VSSMNALIRGL
Sbjct:   81 SPPRRL-LRNRPAEDGKRFVRVAQRLGGQGKWERVLSLLRQAEGDGAVVNHIMYNAAIGALSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE----ACRAARGGRPDEAYGILSRMTART----------------------GGKSVKPNMRCFNTVLAAFAKSGRSRQALSLVEEDMVNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWELAFGLLEDMGXXXXXXXXXXXXXXXXXXXXXXXXXXXPALLRAMKEGGSTAPXXXXXXXXXXXXXXXXXXXXXXVSLLRKDMPAAGVAXDVTXXXXXXXXXXXXXXXXXXXALWDEARAALPPSALNSHA---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXAAGLPPNLRSXXXXXXXXXXXXXXXXXXXXXXXMEEAGLEPDVVSFTSAIAAFRGGKAAXXXXXXXXXGERELSLALGLLEEMKSRGLPPTSFSHSAAIKLCTDANQHERALELFEELRA-----SGQAA----DEPAFTAIIDSCARHSGSGSGGGEGRWETAVALLDEME-ASGVAPSVATFNGAIRACCNGGKWHLGSSLLRRMSAVDGVDPNVSSMNALIRGL 668          
BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Match: A0A835ZF41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF41_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.080e-5
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  515 RHRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIAALSKSGRWKEAMAILDGMEEEATGG--------GAARDVMSFSSAMAACRAAGKAEEAHGLLS 832
            R +P +D ++ +R +Q+LG   +W  A+ +       G R++  +Y+  + AL++SGRW+EA A+L+  E  A GG        G A D   F++A++AC    + E A  LLS
Sbjct:    6 RPQPIRDEQQLLRAIQKLGRDQDWQQAMDVFARGRQAGIRMSLRVYSGALTALARSGRWREATALLE--EALADGGSGXXXXXXGIAPDAALFTAAISACEEDAQWESAVRLLS 117          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK60_ECTSI4.060e-6043.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZF41_9STRA9.080e-533.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:306180..309673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FK60
Model size3046
Max annot lvl2880.D7FK60|-
Hectar predicted targeting categorymitochondrion
Exons2
Evalue1.05e-61
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_005710.1
Descriptionendonuclease activity
Cds size2304
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789816.2023256-UTR-P-littoralis_Contig17:306179..3062461680789816.2023256-UTR-P-littoralis_Contig17:306179..306246Pylaiella littoralis U1_48UTRP-littoralis_Contig17 306180..306246 +
1680789816.2340171-UTR-P-littoralis_Contig17:308998..3096731680789816.2340171-UTR-P-littoralis_Contig17:308998..309673Pylaiella littoralis U1_48UTRP-littoralis_Contig17 308999..309673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789816.2141821-CDS-P-littoralis_Contig17:306246..3075031680789816.2141821-CDS-P-littoralis_Contig17:306246..307503Pylaiella littoralis U1_48CDSP-littoralis_Contig17 306247..307503 +
1680789816.2251606-CDS-P-littoralis_Contig17:307951..3089981680789816.2251606-CDS-P-littoralis_Contig17:307951..308998Pylaiella littoralis U1_48CDSP-littoralis_Contig17 307952..308998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.62.1prot_P-littoralis_Contig17.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 306247..308998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.62.1

>prot_P-littoralis_Contig17.62.1 ID=prot_P-littoralis_Contig17.62.1|Name=mRNA_P-littoralis_Contig17.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=768bp
MATLQARTVMRAPVSRACRRSRSCSRSTSVSAAPLLLATRREGPTRAAAP
PPTTAPPATSFFFSFSTFHSYSTVKQHPSTCSCCCRGYSTVPARRTTTSG
SSTPCAPKAGKSKPAAAAVAAAATGSVSPRSPPPPLPPPSSTPPRGFGLR
HRPAQDGKRFVREVQRLGVKGNWPGALSLLRTAEGDGARVNSVMYNATIA
ALSKSGRWKEAMAILDGMEEEATGGGAARDVMSFSSAMAACRAAGKAEEA
HGLLSRMMSQWKKQRREAAGVKGGGNGSSGISGSGGDVKPNLWCFNTVLS
ALAKRGLSRRALSVVEVDMADAKVTPDLRTWSTLIDACRAGGWSGQQTVA
LISRMRSAGVEPDIWCFNHCLNATSRGGEWELAFGLLKDMGRAGLQPDCW
SYSAAMKTCVNAEQWKIVPVLLEAMVDAGTEAPPNVWNFNISIDAHSKSG
EWEKAVDLLRRAMPAAGVKPNVVSYGSCLDAARKAGQWEVALALWDEMTA
SPSSLSSSSPATTKATKATTAKATVVPNDYTYSIIIDVCAKAGLVDRALA
LLSESHAAGTFPTLFMFNSAIDACSRAGRWEHALGLLRDIGEAGLRPDAI
SYTSVIAAFRGRQLGERELGLALGLTEEMKRNGVAPTNFSHSAAITLCAI
AGQHERALELFEELRVAAASGSGDAEMPPPNEAVFTAIIDSCGGSGQWET
AMRFLEDMEEVSGVAPTLAAFNGAIRACCSGGRWDLGHSLLERMRLGGVD
PEVSSMNALIRGLGSRK*
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mRNA from alignment at P-littoralis_Contig17:306180..309673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.62.1 ID=mRNA_P-littoralis_Contig17.62.1|Name=mRNA_P-littoralis_Contig17.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3494bp|location=Sequence derived from alignment at P-littoralis_Contig17:306180..309673+ (Pylaiella littoralis U1_48)
CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTCTGTGTGTGTGTCTGCTGCG CTGTGCATAAGGGGAGCATGGCGACACTACAAGCAAGGACGGTGATGCGT GCGCCTGTCAGTAGAGCCTGTCGAAGAAGCCGATCATGCTCCAGAAGTAC ATCGGTGAGTGCCGCGCCACTGCTGCTGGCAACACGTAGGGAAGGACCGA CGAGAGCAGCAGCACCGCCACCAACAACAGCACCGCCAGCTACCTCCTTC TTCTTCTCCTTCTCCACCTTCCATTCTTACTCTACCGTGAAACAACATCC TTCTACCTGTAGCTGTTGTTGTAGGGGATACAGCACAGTGCCCGCCAGAA GGACCACCACCAGCGGCAGCAGCACTCCTTGTGCACCCAAGGCTGGAAAA TCAAAGCCCGCTGCGGCAGCAGTAGCAGCGGCAGCAACGGGCTCGGTATC CCCTCGATCCCCTCCTCCTCCTCTTCCTCCTCCTTCTTCTACTCCTCCTC GCGGTTTCGGTTTGCGACACCGCCCCGCTCAAGACGGGAAGCGGTTCGTG CGCGAAGTGCAACGGTTGGGTGTCAAGGGAAACTGGCCTGGAGCCCTGTC CTTGCTTCGAACCGCCGAGGGGGACGGCGCCAGAGTGAACAGCGTCATGT ACAACGCCACGATTGCGGCCCTCTCGAAGAGCGGGCGTTGGAAGGAGGCG ATGGCCATCCTGGACGGAATGGAGGAGGAGGCCACTGGCGGTGGCGCTGC GCGAGACGTCATGAGCTTCTCTTCGGCGATGGCGGCGTGCAGGGCAGCGG GAAAGGCAGAGGAAGCGCACGGCCTCCTGTCGCGTATGATGTCGCAATGG AAGAAGCAAAGGCGTGAAGCCGCCGGGGTGAAAGGGGGTGGGAACGGGAG TAGCGGGATTAGCGGGAGTGGGGGTGACGTGAAGCCAAACCTCTGGTGCT TCAACACGGTCCTCTCGGCACTGGCCAAGCGAGGCCTGTCTCGGCGAGCG CTGTCCGTTGTCGAGGTAGACATGGCGGACGCGAAGGTGACGCCAGACCT CCGAACATGGTCGACCTTGATCGATGCCTGCCGAGCCGGCGGTTGGAGCG GGCAACAGACCGTTGCGCTGATATCGAGAATGAGGAGCGCCGGCGTTGAG CCGGACATCTGGTGCTTCAACCACTGCCTGAACGCCACGAGTCGGGGGGG TGAGTGGGAGCTCGCCTTTGGCCTTCTGAAGGACATGGGCAGAGCGGGGC TGCAGCCCGACTGCTGGAGCTACTCCGCGGCGATGAAGACGTGTGTGAAT GCGGAGCAGTGGAAGATAGTGCCGGTAGGTGTTTTGCTGTCGAATCCCAC TGTTTCCCTCTCCGCTGCTGTCCGTACATGATGCTGTTGTTATCCATGAT ATCTACCGGCGAATGTTTGGCTTGCTCGCTGTTTTGAAATTGGCACGCCA GTATCATGCTTGGTTGACAAAAACAAGCAGTGATACCAGGGGATGCGCAG TAGTGAATGCATCTGGGTTCCTAGTAACAGTGTCCGGCTGCCATTCCCTT AAGTTCCTTGGCATGCCCACCGGTATTTATCCATGAAACAGCAGTGGGAG GTGCCGAGGTATATGAGGGGGTCAACTAACAACAACCTTTTGCGTAGAGG ATGTAATTGTAATCAATTTCGCAATATCTTTCGGCCGGGCCCGGCCCGGG CGTGGCACGTTTTACTTCTTGGAAATCACACCACCACTACCACCACCACG ACCACCACCACTTTCTGAGCAGGTGCTGCTGGAAGCGATGGTGGATGCCG GCACGGAGGCCCCGCCGAACGTCTGGAACTTCAACATCTCCATCGACGCT CACAGTAAGTCCGGGGAGTGGGAGAAAGCGGTGGACCTATTGCGGAGGGC CATGCCGGCGGCGGGTGTCAAGCCCAACGTGGTCAGCTATGGGTCTTGTC TAGACGCGGCGAGGAAGGCCGGACAGTGGGAGGTCGCGCTCGCCCTTTGG GACGAGATGACTGCGAGTCCGTCGAGCTTGAGCTCGAGCTCGCCGGCTAC GACGAAAGCGACGAAAGCGACGACGGCGAAGGCGACGGTAGTGCCCAACG ACTACACGTACAGCATCATCATTGACGTGTGCGCGAAGGCGGGGCTGGTG GACAGGGCCCTCGCCCTGCTGTCGGAGTCTCACGCCGCTGGGACTTTCCC GACCCTCTTCATGTTCAACTCGGCCATCGACGCGTGCTCGAGGGCGGGCC GGTGGGAGCACGCCCTGGGTCTTCTGAGAGATATTGGCGAGGCCGGCCTC AGACCGGACGCTATCTCCTACACCTCCGTGATCGCGGCATTCCGAGGGCG CCAGTTGGGGGAGCGGGAGCTGGGGCTGGCGCTGGGGCTGACCGAGGAGA TGAAGCGGAACGGCGTTGCGCCGACGAACTTTTCCCACTCGGCGGCGATC ACGCTCTGCGCCATCGCCGGCCAGCACGAGCGGGCGCTGGAGCTGTTCGA GGAGCTGAGAGTCGCGGCGGCGTCCGGGTCGGGGGATGCGGAGATGCCGC CGCCTAACGAGGCCGTGTTCACCGCGATCATCGACAGCTGCGGCGGCAGC GGTCAGTGGGAGACGGCGATGCGCTTCCTGGAAGATATGGAGGAGGTGTC GGGTGTGGCACCGACCCTGGCGGCGTTTAACGGAGCCATTCGAGCCTGCT GCAGTGGCGGGAGGTGGGACCTGGGCCACTCTCTGCTGGAGAGAATGAGG CTGGGCGGGGTCGATCCAGAAGTTTCCAGCATGAACGCCCTCATCAGGGG GTTGGGTTCGAGAAAGTAGTACCGGTATCGTAGTCCTTGGGTGCAGAGGT GGAAATGTAGTGGTAAAAGTAGGCGGAGTGATGCGTCAGATACCATCCTC GTCGTGACGGCAGGTCTAAGTGAAACCTAGGGAGCACACTGCAGGAGAAG ATCTGTGTACCTACTTCGTATCATATGATATTTTAGTGTTTGTGTAGAGA TCCCACTGCGGGATTCCGGAAGAAGCCAGCCCACGTCCTGAGCGGCGATG CCGAGGCTTCACACATTCGACGGGGTGGTTGGCGAGCACACGAGCACGGG ACGAAGGACAATCAATTTTCGTCTAGAACGCAACGTTCGGTTGGAGCCGC TTGTGGATCATCAGAGCTTTGTCGCAGCGCCTATCGTTCTTCTTATCATG GAGCAAGAAGGAGTATTATTTTACGTGATTCAACTTCGTCGGAGTATGTA GTACGGCGGGAATGTTCCGTCGTGTTGAGGCACATCATTCCTTCTCGGGT TGGGTAGAGAGAGAAGAATCAGGCAGGCCGAAATACACAGCATGCGTGCT GTTCTCTCGAGCGCGCCCTTCCTTTCTAGCGCAAAAATCCCTACACCTCG TGGGTACGCTTGAACACGTGCTCGTCCGTTTATGTTGAGCGAAAATGATT AGGGGCCGCGGACACAACAGGCAGTGGTGCCACCATAACAAGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:306180..309673+

>mRNA_P-littoralis_Contig17.62.1 ID=mRNA_P-littoralis_Contig17.62.1|Name=mRNA_P-littoralis_Contig17.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2304bp|location=Sequence derived from alignment at P-littoralis_Contig17:306180..309673+ (Pylaiella littoralis U1_48)
ATGGCGACACTACAAGCAAGGACGGTGATGCGTGCGCCTGTCAGTAGAGC
CTGTCGAAGAAGCCGATCATGCTCCAGAAGTACATCGGTGAGTGCCGCGC
CACTGCTGCTGGCAACACGTAGGGAAGGACCGACGAGAGCAGCAGCACCG
CCACCAACAACAGCACCGCCAGCTACCTCCTTCTTCTTCTCCTTCTCCAC
CTTCCATTCTTACTCTACCGTGAAACAACATCCTTCTACCTGTAGCTGTT
GTTGTAGGGGATACAGCACAGTGCCCGCCAGAAGGACCACCACCAGCGGC
AGCAGCACTCCTTGTGCACCCAAGGCTGGAAAATCAAAGCCCGCTGCGGC
AGCAGTAGCAGCGGCAGCAACGGGCTCGGTATCCCCTCGATCCCCTCCTC
CTCCTCTTCCTCCTCCTTCTTCTACTCCTCCTCGCGGTTTCGGTTTGCGA
CACCGCCCCGCTCAAGACGGGAAGCGGTTCGTGCGCGAAGTGCAACGGTT
GGGTGTCAAGGGAAACTGGCCTGGAGCCCTGTCCTTGCTTCGAACCGCCG
AGGGGGACGGCGCCAGAGTGAACAGCGTCATGTACAACGCCACGATTGCG
GCCCTCTCGAAGAGCGGGCGTTGGAAGGAGGCGATGGCCATCCTGGACGG
AATGGAGGAGGAGGCCACTGGCGGTGGCGCTGCGCGAGACGTCATGAGCT
TCTCTTCGGCGATGGCGGCGTGCAGGGCAGCGGGAAAGGCAGAGGAAGCG
CACGGCCTCCTGTCGCGTATGATGTCGCAATGGAAGAAGCAAAGGCGTGA
AGCCGCCGGGGTGAAAGGGGGTGGGAACGGGAGTAGCGGGATTAGCGGGA
GTGGGGGTGACGTGAAGCCAAACCTCTGGTGCTTCAACACGGTCCTCTCG
GCACTGGCCAAGCGAGGCCTGTCTCGGCGAGCGCTGTCCGTTGTCGAGGT
AGACATGGCGGACGCGAAGGTGACGCCAGACCTCCGAACATGGTCGACCT
TGATCGATGCCTGCCGAGCCGGCGGTTGGAGCGGGCAACAGACCGTTGCG
CTGATATCGAGAATGAGGAGCGCCGGCGTTGAGCCGGACATCTGGTGCTT
CAACCACTGCCTGAACGCCACGAGTCGGGGGGGTGAGTGGGAGCTCGCCT
TTGGCCTTCTGAAGGACATGGGCAGAGCGGGGCTGCAGCCCGACTGCTGG
AGCTACTCCGCGGCGATGAAGACGTGTGTGAATGCGGAGCAGTGGAAGAT
AGTGCCGGTGCTGCTGGAAGCGATGGTGGATGCCGGCACGGAGGCCCCGC
CGAACGTCTGGAACTTCAACATCTCCATCGACGCTCACAGTAAGTCCGGG
GAGTGGGAGAAAGCGGTGGACCTATTGCGGAGGGCCATGCCGGCGGCGGG
TGTCAAGCCCAACGTGGTCAGCTATGGGTCTTGTCTAGACGCGGCGAGGA
AGGCCGGACAGTGGGAGGTCGCGCTCGCCCTTTGGGACGAGATGACTGCG
AGTCCGTCGAGCTTGAGCTCGAGCTCGCCGGCTACGACGAAAGCGACGAA
AGCGACGACGGCGAAGGCGACGGTAGTGCCCAACGACTACACGTACAGCA
TCATCATTGACGTGTGCGCGAAGGCGGGGCTGGTGGACAGGGCCCTCGCC
CTGCTGTCGGAGTCTCACGCCGCTGGGACTTTCCCGACCCTCTTCATGTT
CAACTCGGCCATCGACGCGTGCTCGAGGGCGGGCCGGTGGGAGCACGCCC
TGGGTCTTCTGAGAGATATTGGCGAGGCCGGCCTCAGACCGGACGCTATC
TCCTACACCTCCGTGATCGCGGCATTCCGAGGGCGCCAGTTGGGGGAGCG
GGAGCTGGGGCTGGCGCTGGGGCTGACCGAGGAGATGAAGCGGAACGGCG
TTGCGCCGACGAACTTTTCCCACTCGGCGGCGATCACGCTCTGCGCCATC
GCCGGCCAGCACGAGCGGGCGCTGGAGCTGTTCGAGGAGCTGAGAGTCGC
GGCGGCGTCCGGGTCGGGGGATGCGGAGATGCCGCCGCCTAACGAGGCCG
TGTTCACCGCGATCATCGACAGCTGCGGCGGCAGCGGTCAGTGGGAGACG
GCGATGCGCTTCCTGGAAGATATGGAGGAGGTGTCGGGTGTGGCACCGAC
CCTGGCGGCGTTTAACGGAGCCATTCGAGCCTGCTGCAGTGGCGGGAGGT
GGGACCTGGGCCACTCTCTGCTGGAGAGAATGAGGCTGGGCGGGGTCGAT
CCAGAAGTTTCCAGCATGAACGCCCTCATCAGGGGGTTGGGTTCGAGAAA
GTAG
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