mRNA_P-littoralis_Contig17.53.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig17.53.1
Unique NamemRNA_P-littoralis_Contig17.53.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 6.360e-145
Identity = 231/316 (73.10%), Postives = 248/316 (78.48%), Query Frame = 1
Query:  487 GSRRYASTCTGSASSTXXXXXXXXXXXXXXXXDSNISVSGPAAKRVLYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAPRRGEGGEAP 1434
            GSRR AST  GS  ST                 +N + SGPAAKRVLY GHQPTSPLQRTAMAGWA VTALM PERADMVATLGEVTGRLALE+LYRSMLADPEGREILRARPVINE+TVDLAALAALPDGT GKSYSNFMK N FSPD RSPV+YVDDPDLAYVMRRYREVHDLWH L+ LP TVEGELALKWFELVQTGLP+CAL AV GPLALP +EP                       XXX    GR R GSREVLART+VPWA+RAGR+AR+PLVCVWYE+RWEQPLE VRR+LG E+AP+RG+GGEAP
Sbjct:   60 GSRRPASTTIGSGDSTT----------------ANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAVLGPLALPSKEP---------------PAPTTTPSXXXSSGSGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRGKGGEAP 344          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A6H5K3Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y3_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 5.460e-77
Identity = 144/249 (57.83%), Postives = 155/249 (62.25%), Query Frame = 1
Query:  670 MAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAPRRG 1416
            MAGWA VTALM PERADMVATLGEVTGRLALE+LYRSMLADPEGREILRARPVINE+TVDLAALAALPDGT GKSYSNFMK N FSPD RSPV+YVDDPDLAYVMR                    G    KW                                                              GSREVLART++PWAVRAGR+AR+PLVCVWYE+RWEQPLE VRR+LG E+AP+RG
Sbjct:    1 MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRS------------------GGGGGGKWR-------------------------------------------------------------GSREVLARTFIPWAVRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRG 170          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA)

HSP 1 Score: 255 bits (651), Expect = 8.760e-77
Identity = 134/274 (48.91%), Postives = 172/274 (62.77%), Query Frame = 1
Query:  586 SNISVSGPAAKRVLYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAP 1407
            S+ S +G   KR+LY GH P SP QR  +   +A +A   PERADMVA LGE TG  AL++++  ML DP+G E+LR RP ++E +VDL AL  LP GTFGK+Y++FM  N+F+PDSR PV++VDD DLAYVM RYR+VHDLWHVLS LPP++EGE+ALKWFE+VQTGLP+ A+ A+ G   +PR                                        R  L +  VPWA+RAGR++  PL+ VWYER W+  L   R +L FE AP
Sbjct:   10 SSKSAAGEPCKRILYKGHNPISPSQRVGLTFISAFSAFADPERADMVAALGETTGHRALKQMHHRMLQDPDGIELLRERPQLDEHSVDLEALGQLPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMARYRQVHDLWHVLSGLPPSLEGEIALKWFEMVQTGLPVAAISALVGAARVPRE--------------------------------------GRAALRQKLVPWAIRAGRRS-VPLMNVWYERYWDMYLSNFREKLKFEPAP 244          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: W7U2W9_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W9_9STRA)

HSP 1 Score: 233 bits (595), Expect = 1.120e-67
Identity = 125/261 (47.89%), Postives = 160/261 (61.30%), Query Frame = 1
Query:  625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAP 1407
            LY  H PTS  Q+  +AG++A TA   PER DMVA LGE TG  AL+RL R+M ADP GRE+L A+P I E +     L  LP+GTFG+ Y+ F+  + +SPD R+ V++VDD +LA+VM+RYR+VHD WHVL  LPPTV GELALKWFE+VQT LP+ A   V GPL+L  +E                                      R++L   Y+PWAVRA  +AR PL+CVWYER +E+PLE +R+ L    AP
Sbjct:   84 LYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQE--------------------------------------RKLLKEQYIPWAVRAAVKAR-PLMCVWYERSFEEPLELMRKRLQIVTAP 305          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A6T5QVX1_HETAK (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QVX1_HETAK)

HSP 1 Score: 231 bits (589), Expect = 2.140e-67
Identity = 126/261 (48.28%), Postives = 157/261 (60.15%), Query Frame = 1
Query:  625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAP 1407
            LY  HQPTS  Q+  +A ++A+ AL  PERADMVA L E TG +AL  L   M ADP G++IL  +P+++E+TV+L  L +LP GTFG +Y  FM GN FSP+ R+PV++VDD +LAYV+ RYR+VHDLWH L  LPPTV GELALKW EL+QTGLP+ AL A  GPLAL   +                                      R +L R Y+PWA+RA    R PL+CV YE  W +PL  VR  LG   AP
Sbjct:   32 LYPTHQPTSTFQKGFLAVYSALVALNDPERADMVAVLSETTGEIALRNLRDVMKADPVGQQILLEKPILDETTVNLENLGSLPRGTFGHAYYTFMDGNGFSPEGRAPVRFVDDAELAYVLLRYRQVHDLWHALFGLPPTVGGELALKWLELLQTGLPVAALSAAAGPLALAPAD--------------------------------------RALLRRVYLPWALRAHGALRAPLMCVRYEALWGEPLAAVRARLGVLPAP 254          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A151MFC8_ALLMI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A151MFC8_ALLMI)

HSP 1 Score: 227 bits (578), Expect = 4.290e-66
Identity = 121/257 (47.08%), Postives = 157/257 (61.09%), Query Frame = 1
Query:  625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
            LY GH PTSPLQ+  +A  +A+ AL  P R DMVA LGE TG LAL+RL   M  D EG +ILR RP I  ST+D+A L  LPDGTFG+ Y  F++ N+ SPD+R P ++VDD +LAYV++RYREVHDL H L  +P  + GE+ +KWFE VQTGLPMCALGAVFGP+ L  R+                                       +VL    +PWAV++G +A   ++ ++YERRWEQ +E +R E+G 
Sbjct:    9 LYPGHVPTSPLQKVLLAAGSALAALRDPYRHDMVAVLGETTGSLALQRLRDKMRHDAEGYQILRERPRIRLSTLDVAGLRGLPDGTFGREYMRFLEDNRVSPDTRMPAKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCALGAVFGPIRLKARK--------------------------------------LQVLTTELIPWAVQSGLRA-NCILNIYYERRWEQTVESLREEIGI 226          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A8D2LU00_VARKO (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LU00_VARKO)

HSP 1 Score: 226 bits (576), Expect = 6.090e-66
Identity = 124/257 (48.25%), Postives = 155/257 (60.31%), Query Frame = 1
Query:  625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
            LY GH PTSPLQ+  +A  +A  AL  P R DMVA LGE TG LAL+ L   M  DPEGR IL+ RP I+ STVD+A L ALPDGTFG+ Y  F+  N+ SPD+R PV++VDD +LAYV++RYREVHDL H L  +   + GE+ +KWFE VQTGLPMC LGAVFGP+ L  R+ L                                      +L    +PWAVR+G  A   ++ V+YE RWEQ +E +RRE+G 
Sbjct:    9 LYPGHIPTSPLQKGLLAAGSAFMALYNPYRHDMVAVLGETTGYLALQNLREKMRKDPEGRRILQERPRISLSTVDIAGLRALPDGTFGREYVRFLDDNRVSPDTRMPVKFVDDEELAYVIQRYREVHDLMHTLLGMRTNMLGEIVVKWFEAVQTGLPMCILGAVFGPVRLNPRKLL--------------------------------------ILTTELIPWAVRSGSHA-SCILNVYYEERWEQTVEGLRREIGI 226          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A1Y1YE21_9FUNG (Ubiquinone biosynthesis protein COQ4, mitochondrial n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YE21_9FUNG)

HSP 1 Score: 226 bits (576), Expect = 1.790e-65
Identity = 123/262 (46.95%), Postives = 157/262 (59.92%), Query Frame = 1
Query:  625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAPR 1410
            LY GH PTSPL++ A++  AA TAL  P R DMVA LGE TG + L R+   ML DP GR ILR RPV+N  T++L  L  LPDGTFG+ Y  ++   + +PD+R+PV YVDDP+LAYV+RRYRE HD +H L+ +  +VE ELALKWFE  QTGLPM  LG+VFGPL LP  E                                      R+ L   YVPWA+R G  A K L+ V YE  +++PL++ R+ELG  + P+
Sbjct:   45 LYEGHIPTSPLEKGALSVKAAFTALFNPLRGDMVAVLGETTGSMVLARIRDKMLLDPVGRRILRERPVLNSKTLNLPGLRTLPDGTFGREYVRWLDEQQVTPDTRAPVHYVDDPELAYVIRRYRETHDFYHALTGIGISVEDELALKWFEFAQTGLPMTLLGSVFGPLRLPSVE--------------------------------------RKHLFEVYVPWAIRCGSNA-KFLMNVMYEESFDKPLDEFRKELGIYLPPK 267          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A7L4GM74_PODST (COQ4 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L4GM74_PODST)

HSP 1 Score: 225 bits (573), Expect = 4.330e-65
Identity = 120/257 (46.69%), Postives = 154/257 (59.92%), Query Frame = 1
Query:  625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
            LY GH PTSPLQ+  +A  +AVTAL  P R DMVA LGE TG LAL  L   M   PEG  IL+ RP I  ST+D+A L  LPDG+ G+ Y  F++ NK SPD+R P ++VDD +LAYV++RYREVHDL H L  +P  + GE+ +KWFE +QTGLPMC LGA FGP+ L  R+                                       +VLA   VPWA+R+GR A   ++ ++YE+RWEQP+E +R E+G 
Sbjct:   43 LYPGHIPTSPLQKALLAAGSAVTALCDPYRHDMVAVLGETTGCLALPHLRDKMKRHPEGHRILQERPRIRLSTLDMARLRGLPDGSLGREYVRFLEDNKVSPDTRMPTKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAIQTGLPMCVLGAAFGPVRLSARK--------------------------------------LQVLATELVPWAIRSGRNA-SCILNIYYEQRWEQPVESLREEIGI 260          
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A7K5FGZ4_PROAR (COQ4 protein (Fragment) n=1 Tax=Probosciger aterrimus TaxID=141839 RepID=A0A7K5FGZ4_PROAR)

HSP 1 Score: 222 bits (566), Expect = 2.730e-64
Identity = 120/257 (46.69%), Postives = 153/257 (59.53%), Query Frame = 1
Query:  625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
            LY GH PTSPLQ+  +AG +AV AL  P R DMVA LGE TG LAL  L   M   PEG  ILR RP I  ST+D++ L  LPDG+ G+ Y  F++ NK SPD+R P ++VDD +LAYV++RYREVHD+ H L  +P  + GE+ +KWFE +QTGLPMC LGA FGP+ L  R+                                       +VLA   VPWA+R+GR A    + V+YE+RWEQP+E +R E+G 
Sbjct:   27 LYPGHIPTSPLQKALLAGGSAVMALYDPYRHDMVAVLGETTGCLALPNLRDKMKHHPEGYRILRERPRIRLSTLDMSRLQGLPDGSLGREYVRFLEDNKVSPDTRMPPKFVDDEELAYVIQRYREVHDVMHTLLGMPTNMLGEVVVKWFEAIQTGLPMCVLGAAFGPIRLSARK--------------------------------------LQVLATELVPWAIRSGRNA-SCFLNVYYEQRWEQPVESLREEIGI 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK62_ECTSI6.360e-14573.10Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A6H5K3Y3_9PHAE5.460e-7757.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z0M6_9STRA8.760e-7748.91Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
W7U2W9_9STRA1.120e-6747.89Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A6T5QVX1_HETAK2.140e-6748.28Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A151MFC8_ALLMI4.290e-6647.08Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A8D2LU00_VARKO6.090e-6648.25Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A1Y1YE21_9FUNG1.790e-6546.95Ubiquinone biosynthesis protein COQ4, mitochondria... [more]
A0A7L4GM74_PODST4.330e-6546.69COQ4 protein (Fragment) n=2 Tax=Neognathae TaxID=8... [more]
A0A7K5FGZ4_PROAR2.730e-6446.69COQ4 protein (Fragment) n=1 Tax=Probosciger aterri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig17contigP-littoralis_Contig17:269171..273894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FK62
Preferred nameCOQ4
PFAMsCoq4
Model size2036
Max annot lvl2759|Eukaryota
KEGG koko:K18586
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016020,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Exons5
Evalue2.53e-149
EggNOG OGsCOG5031@1|root,KOG3244@2759|Eukaryota
Descriptionubiquinone biosynthetic process
Cds size1263
COG categoryH
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig17.53.1prot_P-littoralis_Contig17.53.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig17 269360..273310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789815.8027537-UTR-P-littoralis_Contig17:269170..2693591680789815.8027537-UTR-P-littoralis_Contig17:269170..269359Pylaiella littoralis U1_48UTRP-littoralis_Contig17 269171..269359 +
1680789815.8683171-UTR-P-littoralis_Contig17:273310..2738941680789815.8683171-UTR-P-littoralis_Contig17:273310..273894Pylaiella littoralis U1_48UTRP-littoralis_Contig17 273311..273894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789815.816182-CDS-P-littoralis_Contig17:269359..2693781680789815.816182-CDS-P-littoralis_Contig17:269359..269378Pylaiella littoralis U1_48CDSP-littoralis_Contig17 269360..269378 +
1680789815.8258662-CDS-P-littoralis_Contig17:269811..2703791680789815.8258662-CDS-P-littoralis_Contig17:269811..270379Pylaiella littoralis U1_48CDSP-littoralis_Contig17 269812..270379 +
1680789815.8368416-CDS-P-littoralis_Contig17:271246..2713341680789815.8368416-CDS-P-littoralis_Contig17:271246..271334Pylaiella littoralis U1_48CDSP-littoralis_Contig17 271247..271334 +
1680789815.8493674-CDS-P-littoralis_Contig17:272038..2721631680789815.8493674-CDS-P-littoralis_Contig17:272038..272163Pylaiella littoralis U1_48CDSP-littoralis_Contig17 272039..272163 +
1680789815.8578331-CDS-P-littoralis_Contig17:272847..2733101680789815.8578331-CDS-P-littoralis_Contig17:272847..273310Pylaiella littoralis U1_48CDSP-littoralis_Contig17 272848..273310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig17.53.1

>prot_P-littoralis_Contig17.53.1 ID=prot_P-littoralis_Contig17.53.1|Name=mRNA_P-littoralis_Contig17.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=421bp
MSFAKRGLALSSRAGVRVLASSGSTSASSTTARGLTTGAAKPPNLAIIAS
GPQQHIPSLSDSFITLSASIHANTINNDSNNDENSPSPRRTTTVTRHGPG
SRRYASTCTGSASSTSSTSADGSSGTDSSSTDSNISVSGPAAKRVLYGGH
QPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLA
DPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSR
SPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTG
LPMCALGAVFGPLALPRREPLPPPPPAPTTTSSSSSSSSSSASDKRKKSS
GRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRREL
GFEVAPRRGEGGEAPVPAPR*
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mRNA from alignment at P-littoralis_Contig17:269171..273894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig17.53.1 ID=mRNA_P-littoralis_Contig17.53.1|Name=mRNA_P-littoralis_Contig17.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4724bp|location=Sequence derived from alignment at P-littoralis_Contig17:269171..273894+ (Pylaiella littoralis U1_48)
CAACCCAGCCACATCCAAGCTGGCCTGACCCACCACCCGTCTCTTCCTTC CTTTCTCTCTCTCGCTGCCATTCCCGCTGTCCCTGTGGTAGCGCGGCGTG ATCCTTCTACTTTACACCGGAGCTCTGGACACGACAAGTGCAGGCTGTGC GTTTGGTTGGACGTTTGGACCTGCCACCTGCCACGCAAGATGAGCTTTGC CAAGAGAGGTGCTGGACTGGTTGCGCCGCATTTTTGTGTACTGATTTGTG TGCGTTGATGACTTCTTTAGTTTTCTGTTGGTTGGGTTCGAGCCGAGCCG CCCACCCTCTTGGGTGGAAGTCACATTGTCTGCTGTGTCCAGCTGGCTGT GTCCCTTCAGGCGACACCAGCAGACTATTTGCTCGGTGGCAGCACACTCT AATTATTTTTCCAATATAATCTAGCACATGAACACTCCCTCTCTCTCTTT CGTAGTTCGCACTTCTAGGGCAGAGATCGGAACGGTTTTACTGCCGATGT GCGTAGACAACACGCACACACGACGTTTGGTATCATCGTCAAGCTAAAGC ACGCTTGATATCGGTTCCCTGTTCAAAACTTAATAGTGAAGCAGACGAAT GGTGACGAACACCCCAAATCATTCGCTCGCCCCACTCGTAGGGTTAGCTC TCAGCTCTCGGGCTGGTGTTCGTGTGCTGGCATCATCGGGGTCAACGTCA GCGTCATCAACAACAGCGCGCGGCCTCACGACCGGCGCCGCGAAACCTCC GAATCTCGCCATCATCGCCTCGGGGCCACAACAACACATCCCCTCCCTCT CCGACAGCTTCATCACCTTAAGTGCATCAATTCATGCCAACACCATCAAC AACGACAGCAACAACGACGAAAACTCACCCTCACCACGACGCACGACTAC TGTTACCCGACACGGCCCGGGCTCTCGGCGATACGCCTCGACCTGCACCG GCAGTGCCAGCAGCACCAGCAGCACCAGTGCCGACGGTAGCAGCGGCACC GACAGTAGCAGCACAGACAGCAACATCTCTGTTTCGGGGCCGGCGGCGAA GAGGGTGCTGTACGGCGGGCACCAGCCGACGTCGCCGCTGCAGAGGACGG CCATGGCCGGGTGGGCGGCGGTGACGGCGCTGATGAAGCCCGAGCGGGCC GACATGGTGGCGACCCTGGGAGAGGTGACGGGCAGGCTGGCGCTGGAGCG GCTATACAGGTCAGATACGTCAACGACAGCTCATTCATATCTTGCGTATT TTTATTGTATCAGATGTATATACCGAAGTACATCCGGTGGGTATCGCCAC ACGATAGAAGCCACCAAGGGTAAAGAAAGCTTGACGTGTACTACCGGTAC TTCGAAGTACTGCTGTAGGTGTTTGGGGGTGGCCATTTCTAGGTTCTAGG ATATACTTCGTATGTATGATACTCTGCTGTTGATGTTGTCTCTTGCACAT GCCTGGTGGTGTCGGCTGGTAGGTCCTCCTGCTCCTCCTGTCGGTCCCTC GGATGTGCACGGGGAGGATTGAGCGCACCGCGAGAGCGACCGACCACCTC CACGTGCGGCGAAAAAGCTCTCGACCTTGATAAAACGGGGGTGGTCCTGC AACTCGATTTTTACCCTGCCATCCCCGACCCTGCTCAAGCCGATCTTGAG CCCCAGGTCCCTGCTGTCCCGGCCACGGGGACCGCCCCCGGTCGACCCCA CGTACCTCATGCCGTCTCGTTTTGTAGTGATGGAAGTGGCAAGGTATCGC GACCCTTCTTATCCGCGGGCAACAATACAAACCCTACGCGGCCGCCGCTG TGACCGGCCGCCATTTGGCGCCATTTGTCGCCGCTTCGCCAAGTTTCGTT TCGTTTCGGCCCGGGCGGGCCTGGCGGGGTGGCCTTGCCATTCCGGGGTA TCGCCAACCCCCGCATTGTCAATGACACACGCGGAAGCCTTTGAGGCGGC CACTTTTTACCAACGTCGCCGTATATAGCACTACACATCATATTACTCGT TTTCTTAGTCCGACAAGAACACGCCCGTTTGGATTGTGTAACCCCCCCCC GCGCGCGCCGTTGCCGTGAAGCGCAGATCCATGCTAGCTGATCCGGAAGG CCGAGAGATTCTCCGCGCAAGGCCGGTCATCAACGAGTCCACCGTTGATC TCGCCGCGCTTGCTGTAAGTGTCTGAAGTGCATATTCCACAGACATGGAG AGGAACAGGGGGGGAGAGAAGGGGGGGGAGAGAGAGAGAGACATGGAGAT ACGAAGGAAGAAAGAGGGGCGAGCGAGAGAGAGAGAGAGATCAGGCGTCT ACCTTCCTAAGTTACTATATTTTGAGATTTTCAACGTAAACCCATCAGGA CCGAATCCAACGACTTCGCACGCGATGACGTCTAGAAATCTATCTAAATG CGTTATCCCAAGAGGAGTGAGATGTTTTTTCGGCACTCGAGTACCGTACC GCTCTCGATGTGGCCTTACCCACCAAGCGTCTGTGTTCTAAAGCCCGGGA GAGTGCCGAATGTACAAGCAGCCGTCGCGCACCGATTTATTCTCTACCTC GTCCCGATGACTTCCAACTTAACTGGCGCCCCTTCACGTGCGCGATGCCT CCCCGTTCTCGCCGTCCCGGTCGAGCCTGCAATGTTCCTGTACTGATAAA AAAACAAATAACGATAATAAGTTCGCGCGTGTTGTTTGTGTAGCCCCGAT CCCTTTCTGTATGACCTCGGGCGGTACGCTCGGAACATGTCGGTCGACGG ATGATGTACGCCAGCGCCGGCGTCCGGAATGGAGAGGATGGGAAAACAAT AACCAACATCCAAACTCTGGTCATTTGAAACCTCTGTACATTAAAAGCGC CTCTGATCCGTTCGACAGGCGCTCCCTGACGGCACCTTCGGCAAGAGCTA CTCAAACTTCATGAAGGGAAACAAGTTTTCTCCCGACAGCCGGAGCCCGG TGCAGTACGTGGACGATCCGGATCTGGCGTACGTCATGCGGAGGTGTGAG GTCAACGTGAAACCGGTTTCACTCACTTTGAAGAGGCCAACACAAAACCA GTCTCACTCGTTGTGAAGTGGAGTTCTTTATCAAGATCGGGGGGGGGGGG GTGGGGGAGATTTGAGCGTAATTATATTTAGACCCAATTCCAGTACCTTG ACAATGGCATTCTTCGAGGCTGATGGATGGTTCAAGAAGAGGCAACGGGT GGCAACGCCGATAATGCCCTAGCTACGCGGAGCGGGACCCGAGGTGTGGT GTCTCCCTGTATTATTCACGAAAGAGAGACGCTGCTTTCGGCCCTTCCTC CTCCTCGGCAACACGCTTGTCTGCGGCGCAACGCTGCACGTCAGCCGCAG CGCGTGGCAGCAGCATATTATCGGCGTTATCTGAAGGCGATTCAGCAGAA GGCGGGTTTGACCGAAGAGGGCGTTCGAGCATTTTTTGCTCGACGACTAT CCACGCAAGCAACGGGGCATCTGATAGTTCCACACCCGCTCGTATGCCCC ACCCACCCACCTACCCCAAGTTGGACCGAAAACATGTCTTGTGAGCGTCA AATCAAAGGTAGACTTTGCCCCTCTTTCTCTGAGGTAGCAATGCATGGGT CAATCAACTGCTGTTGGGTAAGGTGAACTCAATTGACCCCCCCCCCCCCA ATTGTCGCCGTGCGTTGAAAAAAAAAGATACCGCGAGGTTCACGACCTGT GGCACGTGCTCAGCGACCTACCCCCGACGGTCGAAGGAGAGCTGGCGCTG AAGTGGTTCGAGCTCGTACAGACGGGGCTGCCCATGTGCGCCTTGGGGGC GGTGTTCGGCCCCCTCGCCCTCCCACGCAGAGAGCCGCTGCCACCACCAC CGCCAGCGCCAACAACAACAAGCTCCTCCTCCTCCTCCTCCTCCTCCTCT GCCAGCGACAAGAGAAAGAAGAGCAGCGGCAGAAATAGGGGGGGCAGCCG CGAAGTGCTGGCGCGCACGTACGTCCCGTGGGCTGTTCGTGCTGGAAGGC AGGCCCGGAAGCCGCTGGTCTGCGTGTGGTACGAGAGGCGGTGGGAGCAA CCCTTGGAACAAGTGAGGAGGGAGCTGGGGTTTGAGGTGGCGCCGCGGAG GGGAGAAGGTGGCGAGGCTCCGGTTCCGGCACCTCGGTAGAGCGGAGAGC CAGCGCAGCTGTCACTACTGTTGAAAGACCACAGAGTAACTTGGACAATT TTTTGACGGGGGAACAAGATTATGGTGACCCCCCCCAAAGGATGAAATAA CGTGGGACGGAGGACCGACCGATAGCCTCGGTTGTTGTCTAGAGACACTG TACCGTCCATGACTCGTTTGTTACAGACACGGATTTGGTGGTGGGATCTA CGGTTCGATCAGCATCGCGTGGTTCCGTGCATCGACTTTTGGCGCGCGGG GGTTGGGGGGCAGGGGGGCGCGTACGTGTACGCCGGCGGGCGTCAGAGGA GATCCACCTGTTTGATGCAAAATTGTTGCACAAGTACGCGACTGTGGTGC TTCGTCGTGTGCTTCATTGTTTGTCGCATTGGGCCAAGCCCGCACTCGTG TCCGGCGTGATGGTTTTTATTCCAAAACTTTGTTGGTGTTCGCTTTCGGA AGGCGGGGTGCAAAGATTGACGGTTGTGAACAGCTTCTTTTTTTTTCGAG ATACACAAAAGGGTTGATTGCCACAGTCAGCGATTGGTATGTACGAAAGG ACACAACTCACAAAGCACGCCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig17:269171..273894+

>mRNA_P-littoralis_Contig17.53.1 ID=mRNA_P-littoralis_Contig17.53.1|Name=mRNA_P-littoralis_Contig17.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1263bp|location=Sequence derived from alignment at P-littoralis_Contig17:269171..273894+ (Pylaiella littoralis U1_48)
ATGAGCTTTGCCAAGAGAGGGTTAGCTCTCAGCTCTCGGGCTGGTGTTCG
TGTGCTGGCATCATCGGGGTCAACGTCAGCGTCATCAACAACAGCGCGCG
GCCTCACGACCGGCGCCGCGAAACCTCCGAATCTCGCCATCATCGCCTCG
GGGCCACAACAACACATCCCCTCCCTCTCCGACAGCTTCATCACCTTAAG
TGCATCAATTCATGCCAACACCATCAACAACGACAGCAACAACGACGAAA
ACTCACCCTCACCACGACGCACGACTACTGTTACCCGACACGGCCCGGGC
TCTCGGCGATACGCCTCGACCTGCACCGGCAGTGCCAGCAGCACCAGCAG
CACCAGTGCCGACGGTAGCAGCGGCACCGACAGTAGCAGCACAGACAGCA
ACATCTCTGTTTCGGGGCCGGCGGCGAAGAGGGTGCTGTACGGCGGGCAC
CAGCCGACGTCGCCGCTGCAGAGGACGGCCATGGCCGGGTGGGCGGCGGT
GACGGCGCTGATGAAGCCCGAGCGGGCCGACATGGTGGCGACCCTGGGAG
AGGTGACGGGCAGGCTGGCGCTGGAGCGGCTATACAGATCCATGCTAGCT
GATCCGGAAGGCCGAGAGATTCTCCGCGCAAGGCCGGTCATCAACGAGTC
CACCGTTGATCTCGCCGCGCTTGCTGCGCTCCCTGACGGCACCTTCGGCA
AGAGCTACTCAAACTTCATGAAGGGAAACAAGTTTTCTCCCGACAGCCGG
AGCCCGGTGCAGTACGTGGACGATCCGGATCTGGCGTACGTCATGCGGAG
ATACCGCGAGGTTCACGACCTGTGGCACGTGCTCAGCGACCTACCCCCGA
CGGTCGAAGGAGAGCTGGCGCTGAAGTGGTTCGAGCTCGTACAGACGGGG
CTGCCCATGTGCGCCTTGGGGGCGGTGTTCGGCCCCCTCGCCCTCCCACG
CAGAGAGCCGCTGCCACCACCACCGCCAGCGCCAACAACAACAAGCTCCT
CCTCCTCCTCCTCCTCCTCCTCTGCCAGCGACAAGAGAAAGAAGAGCAGC
GGCAGAAATAGGGGGGGCAGCCGCGAAGTGCTGGCGCGCACGTACGTCCC
GTGGGCTGTTCGTGCTGGAAGGCAGGCCCGGAAGCCGCTGGTCTGCGTGT
GGTACGAGAGGCGGTGGGAGCAACCCTTGGAACAAGTGAGGAGGGAGCTG
GGGTTTGAGGTGGCGCCGCGGAGGGGAGAAGGTGGCGAGGCTCCGGTTCC
GGCACCTCGGTAG
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