mRNA_P-littoralis_Contig17.53.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 6.360e-145 Identity = 231/316 (73.10%), Postives = 248/316 (78.48%), Query Frame = 1
Query: 487 GSRRYASTCTGSASSTXXXXXXXXXXXXXXXXDSNISVSGPAAKRVLYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAPRRGEGGEAP 1434
GSRR AST GS ST +N + SGPAAKRVLY GHQPTSPLQRTAMAGWA VTALM PERADMVATLGEVTGRLALE+LYRSMLADPEGREILRARPVINE+TVDLAALAALPDGT GKSYSNFMK N FSPD RSPV+YVDDPDLAYVMRRYREVHDLWH L+ LP TVEGELALKWFELVQTGLP+CAL AV GPLALP +EP XXX GR R GSREVLART+VPWA+RAGR+AR+PLVCVWYE+RWEQPLE VRR+LG E+AP+RG+GGEAP
Sbjct: 60 GSRRPASTTIGSGDSTT----------------ANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAVLGPLALPSKEP---------------PAPTTTPSXXXSSGSGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRGKGGEAP 344
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A6H5K3Y3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y3_9PHAE) HSP 1 Score: 253 bits (645), Expect = 5.460e-77 Identity = 144/249 (57.83%), Postives = 155/249 (62.25%), Query Frame = 1
Query: 670 MAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAPRRG 1416
MAGWA VTALM PERADMVATLGEVTGRLALE+LYRSMLADPEGREILRARPVINE+TVDLAALAALPDGT GKSYSNFMK N FSPD RSPV+YVDDPDLAYVMR G KW GSREVLART++PWAVRAGR+AR+PLVCVWYE+RWEQPLE VRR+LG E+AP+RG
Sbjct: 1 MAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRS------------------GGGGGGKWR-------------------------------------------------------------GSREVLARTFIPWAVRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQRG 170
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA) HSP 1 Score: 255 bits (651), Expect = 8.760e-77 Identity = 134/274 (48.91%), Postives = 172/274 (62.77%), Query Frame = 1
Query: 586 SNISVSGPAAKRVLYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAP 1407
S+ S +G KR+LY GH P SP QR + +A +A PERADMVA LGE TG AL++++ ML DP+G E+LR RP ++E +VDL AL LP GTFGK+Y++FM N+F+PDSR PV++VDD DLAYVM RYR+VHDLWHVLS LPP++EGE+ALKWFE+VQTGLP+ A+ A+ G +PR R L + VPWA+RAGR++ PL+ VWYER W+ L R +L FE AP
Sbjct: 10 SSKSAAGEPCKRILYKGHNPISPSQRVGLTFISAFSAFADPERADMVAALGETTGHRALKQMHHRMLQDPDGIELLRERPQLDEHSVDLEALGQLPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMARYRQVHDLWHVLSGLPPSLEGEIALKWFEMVQTGLPVAAISALVGAARVPRE--------------------------------------GRAALRQKLVPWAIRAGRRS-VPLMNVWYERYWDMYLSNFREKLKFEPAP 244
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: W7U2W9_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W9_9STRA) HSP 1 Score: 233 bits (595), Expect = 1.120e-67 Identity = 125/261 (47.89%), Postives = 160/261 (61.30%), Query Frame = 1
Query: 625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAP 1407
LY H PTS Q+ +AG++A TA PER DMVA LGE TG AL+RL R+M ADP GRE+L A+P I E + L LP+GTFG+ Y+ F+ + +SPD R+ V++VDD +LA+VM+RYR+VHD WHVL LPPTV GELALKWFE+VQT LP+ A V GPL+L +E R++L Y+PWAVRA +AR PL+CVWYER +E+PLE +R+ L AP
Sbjct: 84 LYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQE--------------------------------------RKLLKEQYIPWAVRAAVKAR-PLMCVWYERSFEEPLELMRKRLQIVTAP 305
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A6T5QVX1_HETAK (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QVX1_HETAK) HSP 1 Score: 231 bits (589), Expect = 2.140e-67 Identity = 126/261 (48.28%), Postives = 157/261 (60.15%), Query Frame = 1
Query: 625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAP 1407
LY HQPTS Q+ +A ++A+ AL PERADMVA L E TG +AL L M ADP G++IL +P+++E+TV+L L +LP GTFG +Y FM GN FSP+ R+PV++VDD +LAYV+ RYR+VHDLWH L LPPTV GELALKW EL+QTGLP+ AL A GPLAL + R +L R Y+PWA+RA R PL+CV YE W +PL VR LG AP
Sbjct: 32 LYPTHQPTSTFQKGFLAVYSALVALNDPERADMVAVLSETTGEIALRNLRDVMKADPVGQQILLEKPILDETTVNLENLGSLPRGTFGHAYYTFMDGNGFSPEGRAPVRFVDDAELAYVLLRYRQVHDLWHALFGLPPTVGGELALKWLELLQTGLPVAALSAAAGPLALAPAD--------------------------------------RALLRRVYLPWALRAHGALRAPLMCVRYEALWGEPLAAVRARLGVLPAP 254
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A151MFC8_ALLMI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A151MFC8_ALLMI) HSP 1 Score: 227 bits (578), Expect = 4.290e-66 Identity = 121/257 (47.08%), Postives = 157/257 (61.09%), Query Frame = 1
Query: 625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
LY GH PTSPLQ+ +A +A+ AL P R DMVA LGE TG LAL+RL M D EG +ILR RP I ST+D+A L LPDGTFG+ Y F++ N+ SPD+R P ++VDD +LAYV++RYREVHDL H L +P + GE+ +KWFE VQTGLPMCALGAVFGP+ L R+ +VL +PWAV++G +A ++ ++YERRWEQ +E +R E+G
Sbjct: 9 LYPGHVPTSPLQKVLLAAGSALAALRDPYRHDMVAVLGETTGSLALQRLRDKMRHDAEGYQILRERPRIRLSTLDVAGLRGLPDGTFGREYMRFLEDNRVSPDTRMPAKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCALGAVFGPIRLKARK--------------------------------------LQVLTTELIPWAVQSGLRA-NCILNIYYERRWEQTVESLREEIGI 226
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A8D2LU00_VARKO (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LU00_VARKO) HSP 1 Score: 226 bits (576), Expect = 6.090e-66 Identity = 124/257 (48.25%), Postives = 155/257 (60.31%), Query Frame = 1
Query: 625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
LY GH PTSPLQ+ +A +A AL P R DMVA LGE TG LAL+ L M DPEGR IL+ RP I+ STVD+A L ALPDGTFG+ Y F+ N+ SPD+R PV++VDD +LAYV++RYREVHDL H L + + GE+ +KWFE VQTGLPMC LGAVFGP+ L R+ L +L +PWAVR+G A ++ V+YE RWEQ +E +RRE+G
Sbjct: 9 LYPGHIPTSPLQKGLLAAGSAFMALYNPYRHDMVAVLGETTGYLALQNLREKMRKDPEGRRILQERPRISLSTVDIAGLRALPDGTFGREYVRFLDDNRVSPDTRMPVKFVDDEELAYVIQRYREVHDLMHTLLGMRTNMLGEIVVKWFEAVQTGLPMCILGAVFGPVRLNPRKLL--------------------------------------ILTTELIPWAVRSGSHA-SCILNVYYEERWEQTVEGLRREIGI 226
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A1Y1YE21_9FUNG (Ubiquinone biosynthesis protein COQ4, mitochondrial n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YE21_9FUNG) HSP 1 Score: 226 bits (576), Expect = 1.790e-65 Identity = 123/262 (46.95%), Postives = 157/262 (59.92%), Query Frame = 1
Query: 625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGFEVAPR 1410
LY GH PTSPL++ A++ AA TAL P R DMVA LGE TG + L R+ ML DP GR ILR RPV+N T++L L LPDGTFG+ Y ++ + +PD+R+PV YVDDP+LAYV+RRYRE HD +H L+ + +VE ELALKWFE QTGLPM LG+VFGPL LP E R+ L YVPWA+R G A K L+ V YE +++PL++ R+ELG + P+
Sbjct: 45 LYEGHIPTSPLEKGALSVKAAFTALFNPLRGDMVAVLGETTGSMVLARIRDKMLLDPVGRRILRERPVLNSKTLNLPGLRTLPDGTFGREYVRWLDEQQVTPDTRAPVHYVDDPELAYVIRRYRETHDFYHALTGIGISVEDELALKWFEFAQTGLPMTLLGSVFGPLRLPSVE--------------------------------------RKHLFEVYVPWAIRCGSNA-KFLMNVMYEESFDKPLDEFRKELGIYLPPK 267
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A7L4GM74_PODST (COQ4 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L4GM74_PODST) HSP 1 Score: 225 bits (573), Expect = 4.330e-65 Identity = 120/257 (46.69%), Postives = 154/257 (59.92%), Query Frame = 1
Query: 625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
LY GH PTSPLQ+ +A +AVTAL P R DMVA LGE TG LAL L M PEG IL+ RP I ST+D+A L LPDG+ G+ Y F++ NK SPD+R P ++VDD +LAYV++RYREVHDL H L +P + GE+ +KWFE +QTGLPMC LGA FGP+ L R+ +VLA VPWA+R+GR A ++ ++YE+RWEQP+E +R E+G
Sbjct: 43 LYPGHIPTSPLQKALLAAGSAVTALCDPYRHDMVAVLGETTGCLALPHLRDKMKRHPEGHRILQERPRIRLSTLDMARLRGLPDGSLGREYVRFLEDNKVSPDTRMPTKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAIQTGLPMCVLGAAFGPVRLSARK--------------------------------------LQVLATELVPWAIRSGRNA-SCILNIYYEQRWEQPVESLREEIGI 260
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Match: A0A7K5FGZ4_PROAR (COQ4 protein (Fragment) n=1 Tax=Probosciger aterrimus TaxID=141839 RepID=A0A7K5FGZ4_PROAR) HSP 1 Score: 222 bits (566), Expect = 2.730e-64 Identity = 120/257 (46.69%), Postives = 153/257 (59.53%), Query Frame = 1
Query: 625 LYGGHQPTSPLQRTAMAGWAAVTALMKPERADMVATLGEVTGRLALERLYRSMLADPEGREILRARPVINESTVDLAALAALPDGTFGKSYSNFMKGNKFSPDSRSPVQYVDDPDLAYVMRRYREVHDLWHVLSDLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPRREPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRNRGGSREVLARTYVPWAVRAGRQARKPLVCVWYERRWEQPLEQVRRELGF 1395
LY GH PTSPLQ+ +AG +AV AL P R DMVA LGE TG LAL L M PEG ILR RP I ST+D++ L LPDG+ G+ Y F++ NK SPD+R P ++VDD +LAYV++RYREVHD+ H L +P + GE+ +KWFE +QTGLPMC LGA FGP+ L R+ +VLA VPWA+R+GR A + V+YE+RWEQP+E +R E+G
Sbjct: 27 LYPGHIPTSPLQKALLAGGSAVMALYDPYRHDMVAVLGETTGCLALPNLRDKMKHHPEGYRILRERPRIRLSTLDMSRLQGLPDGSLGREYVRFLEDNKVSPDTRMPPKFVDDEELAYVIQRYREVHDVMHTLLGMPTNMLGEVVVKWFEAIQTGLPMCVLGAAFGPIRLSARK--------------------------------------LQVLATELVPWAIRSGRNA-SCFLNVYYEQRWEQPVESLREEIGI 244 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig17.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig17.53.1 >prot_P-littoralis_Contig17.53.1 ID=prot_P-littoralis_Contig17.53.1|Name=mRNA_P-littoralis_Contig17.53.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=421bp MSFAKRGLALSSRAGVRVLASSGSTSASSTTARGLTTGAAKPPNLAIIASback to top mRNA from alignment at P-littoralis_Contig17:269171..273894+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig17.53.1 ID=mRNA_P-littoralis_Contig17.53.1|Name=mRNA_P-littoralis_Contig17.53.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4724bp|location=Sequence derived from alignment at P-littoralis_Contig17:269171..273894+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig17:269171..273894+ >mRNA_P-littoralis_Contig17.53.1 ID=mRNA_P-littoralis_Contig17.53.1|Name=mRNA_P-littoralis_Contig17.53.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1263bp|location=Sequence derived from alignment at P-littoralis_Contig17:269171..273894+ (Pylaiella littoralis U1_48)back to top |