mRNA_P-littoralis_Contig168.22.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI) HSP 1 Score: 118 bits (295), Expect = 7.390e-29 Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 1
Query: 4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
K+++ F+L+AL++ GS +V GR R ++PPN P+ D+T+ GG++ALTG Q+W++SSI P L PIF++ + YV+ +A VA R + N G+ AG VC AF DLI ACS SSF+VR+ SFT
Sbjct: 133 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFT 259
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI) HSP 1 Score: 118 bits (295), Expect = 1.710e-28 Identity = 61/128 (47.66%), Postives = 88/128 (68.75%), Query Frame = 1
Query: 4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
K+++ F+L+AL++ GS +V GR R ++PPN P+ D+T+ GG++ALTG Q+W++SSI P L PIF++ + YV+ +A VA R + N G+ AG VC AF DLI ACS SSF+VR+ SFT
Sbjct: 238 KKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFT 364
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI) HSP 1 Score: 110 bits (275), Expect = 8.070e-27 Identity = 59/128 (46.09%), Postives = 86/128 (67.19%), Query Frame = 1
Query: 4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
K+++ F+L+AL++ S +V GR R ++P N P+ D+T+ GG++ALTG Q+W++SSI P L PIF++ + YV+ +A VA R + N G+ AG VC AF DLI ACS SSF+VR+ SFT
Sbjct: 14 KKIMTFVLDALDSAVSEIVRGRFAWRRMLPQNVLPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSHPNLLDDYVRAMVVAEVADRIDV-NSGTPAGKAAVCAAFQDLIKACSWSSFVVRSPSFT 140
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI) HSP 1 Score: 105 bits (261), Expect = 9.810e-24 Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
K+++ F+++AL+ GS +V R ++PPN P+ D+T+ GG+SALTG Q+W++SS P L PIF++ ++ YV+ + VA R + G+ AG VC AF DL+ ACS S F+VR+ SFT
Sbjct: 144 KKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDP-GTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFT 270
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.150e-16 Identity = 50/117 (42.74%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 49 SALVSGR----LKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMKAYVKVADIAAVAQRKGISNCGSVAGLKNVCGAFLDLITACSASSFMVRAKSFT 387
SAL SG+ + ++ P +E + D+T+ GG SALTG Q+W++SSI+P L PIF++ ++ YV+ + VA R + G+ AG VC AF DL+ ACS S F+VR+ SFT
Sbjct: 76 SALNSGKKIMGFVMDALDPAGSEIVPDITSAGGRSALTGQQLWLVSSIVPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEP-GTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFT 191
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.270e-12 Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 4 KRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 213
K+++ F+++AL+ G+ +V R R ++PPN P+ D+T+ GG SALTG Q+W+++SI P L PIF++
Sbjct: 189 KKIMGFVMDALDPTGTEVVRARFAWRRMLPPNVSPIADITSAGGRSALTGQQLWLVASIFPFLLAPIFSS 258
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 3.960e-11 Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 19 FLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 213
F+++AL+ GS +V R R ++P N P+ D+T+ GG+SALTG Q+W++SSI P L P+F++
Sbjct: 608 FVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSS 672
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 1.780e-5 Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 4 KRMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMK 228
+++ + LL L+ G L+S K S+ PL D +DGGFSAL+G +W LSS+ L+FRP+ + SMK
Sbjct: 300 RKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWTLSSVALLVFRPVLRSVASMK 375
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 51.2 bits (121), Expect = 8.440e-5 Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 7 RMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFANHMSMK 228
++ + LL L+ G L+S K S+ PL D +DGGFSAL+G +W LSS+ L+FRP+ + SMK
Sbjct: 593 KIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWRLSSVALLVFRPVLRSVASMK 667 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig168.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig168.22.1 >prot_P-littoralis_Contig168.22.1 ID=prot_P-littoralis_Contig168.22.1|Name=mRNA_P-littoralis_Contig168.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp MIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQback to top mRNA from alignment at P-littoralis_Contig168:108103..108950- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig168.22.1 ID=mRNA_P-littoralis_Contig168.22.1|Name=mRNA_P-littoralis_Contig168.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=848bp|location=Sequence derived from alignment at P-littoralis_Contig168:108103..108950- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig168:108103..108950- >mRNA_P-littoralis_Contig168.22.1 ID=mRNA_P-littoralis_Contig168.22.1|Name=mRNA_P-littoralis_Contig168.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig168:108103..108950- (Pylaiella littoralis U1_48)back to top |